mRNA_H-paniculata_contig1913.4800.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1913.4800.1
Unique NamemRNA_H-paniculata_contig1913.4800.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.480e-21
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSND-TAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
            P +ARVARVV GAPAS AV+ERDFS    MMTS + + D T +VE ILFLH N DLIP+++   TE  A    PGRL NPV  L+ L+G F
Sbjct:    7 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANPVEGLEQLDGAF 97          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.060e-20
Identity = 59/120 (49.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  217 RKLQFGSCATPSHGNCLDSVPW------PLPYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
            R +Q GS A     +C D + W        P +ARVARVV GAPAS AV+ERDFS    MMTS +S+ D+ +VE I+FLH N DLIP+++   TE  A    PGRL NPV  L+ L+G F
Sbjct:  591 RAVQGGSLAPGL--SCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLDGVF 708          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.140e-18
Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  217 RKLQFGSCATPSHGNCLDSVPW------PLPYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
            R +Q GS A      C D + W        P +ARVARVV+GA AS AV+E DFS    MMTS +S+ D+ +VE ILFLH N DLIP+++   TE  A    PGRL NPV  L+ L+G F
Sbjct:  364 RAVQGGSLAAGLR--CEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVARTKIPGRLANPVEGLEQLDGAF 481          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.170e-18
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPFHTI-LDDGDGEFG 594
            P +AR ARVV GAPAS AV+ERDF+   CMM S +S+ D  +VE +LFLH N DLIP+ +P   ++      PGRL NP+ +L  L+G    + L + +G  G
Sbjct:  559 PLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGLDGTLGLVDLTNDEGGVG 661          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.070e-17
Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  304 VARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAW-VETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
            VARVV GAPAS A +ERDFS    MMTS +S+ D+ + VE ILFLH N DLIP+++   TE  A    PGRL NPV  L+ L+G F
Sbjct:   12 VARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTLTEAVARTMFPGRLANPVEGLKQLDGAF 97          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.570e-16
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  262 CLDSVPW------PLPYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
            C D + W        P +ARVARVV GAPAS AV+E  FS    M TS +S+ D+ +VE I+FLH N +LIP+++   TE  A    PGRL NPV  L+ L+G F
Sbjct:  140 CEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVVARTKFPGRLANPVDGLEPLDGAF 244          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 9.940e-15
Identity = 47/103 (45.63%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGAT---PGRLRNPVFDLQHLNGPFHTILDDGDGE 588
            P +ARVARVV  APAS  V ERD  +   MMTS +S+ D  +VE +LFLH N DL+P+ +P    D   G     PGRL NP+ +L  L+G F  +    D E
Sbjct:  661 PLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDE 763          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.260e-12
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPA 474
            P +AR ARVV GAPAS AV+E DF     +MTS +S+ D  +VE ILFLH N DLIP+++PA
Sbjct:   49 PLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPA 110          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.960e-8
Identity = 39/94 (41.49%), Postives = 47/94 (50.00%), Query Frame = 1
Query:  289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGAT----PGRLRNPVFDLQHLNGPF 558
            P +AR  RVV GAPAS A                       +VE ILFLH N DLIPD++PA   D    AT    PGRL+NP   L+ ++G F
Sbjct:   49 PLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAF 119          
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A2V3IDA5_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDA5_9FLOR)

HSP 1 Score: 63.5 bits (153), Expect = 9.250e-8
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRL 516
            P ++ VAR VLG P S A I+RDF      ++S ++ +D+A+V+ +LFLH N DLIP +VP  +  +     P RL
Sbjct:  256 PSLSVVARAVLGHPVSSARIDRDFGTAGSFLSSRRTRHDSAFVDMLLFLHCNLDLIPSDVPEMSNPEWKSQIPARL 331          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KCJ3_9PHAE3.480e-2157.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE8.060e-2049.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.140e-1848.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.170e-1846.60Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE1.070e-1755.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE1.570e-1647.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI9.940e-1545.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE1.260e-1258.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE3.960e-841.49Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A2V3IDA5_9FLOR9.250e-842.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1913contigH-paniculata_contig1913:10723..11625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size903
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1913.4800.1prot_H-paniculata_contig1913.4800.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1913 11017..11433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.870137-UTR-H-paniculata_contig1913:10722..110161622929463.870137-UTR-H-paniculata_contig1913:10722..11016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1913 10723..11016 +
1691480872.6133375-UTR-H-paniculata_contig1913:10722..110161691480872.6133375-UTR-H-paniculata_contig1913:10722..11016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1913 10723..11016 +
1622929463.9146545-UTR-H-paniculata_contig1913:11433..116251622929463.9146545-UTR-H-paniculata_contig1913:11433..11625Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1913 11434..11625 +
1691480872.6304522-UTR-H-paniculata_contig1913:11433..116251691480872.6304522-UTR-H-paniculata_contig1913:11433..11625Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1913 11434..11625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.8899724-CDS-H-paniculata_contig1913:11016..114331622929463.8899724-CDS-H-paniculata_contig1913:11016..11433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1913 11017..11433 +
1691480872.6223402-CDS-H-paniculata_contig1913:11016..114331691480872.6223402-CDS-H-paniculata_contig1913:11016..11433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1913 11017..11433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1913.4800.1

>prot_H-paniculata_contig1913.4800.1 ID=prot_H-paniculata_contig1913.4800.1|Name=mRNA_H-paniculata_contig1913.4800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHEN
NDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPFHTILDDGDGEFG
RVLDILYITERETCLQVVFSLGWVTEFTSTVSSVQLRR*
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mRNA from alignment at H-paniculata_contig1913:10723..11625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1913.4800.1 ID=mRNA_H-paniculata_contig1913.4800.1|Name=mRNA_H-paniculata_contig1913.4800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=903bp|location=Sequence derived from alignment at H-paniculata_contig1913:10723..11625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGGTGGGCCTGGTCGAAGCGAAAGGGATAGAAGCTGTGGCGGTGGAA ATACGGCTTCAGTACGTTTGCCTCTAGGCGGGAAAAGAGGCGAGGCGATG CTCAGCGCGTATACCGACGTCGAACTGGTCCGGGTCGCAGAGACTAAGAT TACAGTCCCCGGAGCGAGAACACACGAGGAAACCGTGAGGGAGGAGCTGT CGAACCTCCCGCGAATCGAAAACTACAGTTTGGATCGTGTGCTACTCCGT CACACGGTAATTGTTTGGACAGCGTACCCTGGCCGCTTCCCTATATGGCA CGAGTGGCGCGTGTGGTGTTGGGGGCTCCGGCCTCGGGGGCTGTAATAGA ACGGGATTTCAGCGCCGGCGACTGCATGATGACCTCTTGCAAAAGTTCGA ATGACACGGCGTGGGTGGAAACGATCCTGTTCTTGCACGAGAACAACGAC CTCATTCCCGACAACGTGCCTGCGTTTACCGAGGATCAAGCCTTGGGTGC TACTCCTGGGCGGCTGCGAAACCCGGTCTTTGATTTACAACACCTCAACG GGCCGTTCCACACGATATTGGACGACGGTGACGGAGAATTTGGACGTGTC TTGGATATTTTATATATCACGGAGCGCGAAACTTGCCTACAGGTTGTATT TTCGTTGGGTTGGGTTACTGAGTTTACCTCGACGGTATCTTCGGTGCAAT TACGGCGGTGAGTATTCTCAGAGCAATTGCATTTGGTGTGCGGTACATGC TGAGTACTGGTGGTATTTGCTTCGGGTAGGCGGCTGTTTTTATTTGAGGT AAGTGCAGTAAACACTGCATAAAGGAAACAGTCGTAAAGATCACCGGCAA TATAATGGCAATGTGCGGGTACCGGCAAAGCATGTTTTCTCGACCATGTT TGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1913:10723..11625+

>mRNA_H-paniculata_contig1913.4800.1 ID=mRNA_H-paniculata_contig1913.4800.1|Name=mRNA_H-paniculata_contig1913.4800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig1913:10723..11625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACGAGTGGCGCGTGTGGTGTTGGGGGCTCCGGCCTCGGGGGCTGT
AATAGAACGGGATTTCAGCGCCGGCGACTGCATGATGACCTCTTGCAAAA
GTTCGAATGACACGGCGTGGGTGGAAACGATCCTGTTCTTGCACGAGAAC
AACGACCTCATTCCCGACAACGTGCCTGCGTTTACCGAGGATCAAGCCTT
GGGTGCTACTCCTGGGCGGCTGCGAAACCCGGTCTTTGATTTACAACACC
TCAACGGGCCGTTCCACACGATATTGGACGACGGTGACGGAGAATTTGGA
CGTGTCTTGGATATTTTATATATCACGGAGCGCGAAACTTGCCTACAGGT
TGTATTTTCGTTGGGTTGGGTTACTGAGTTTACCTCGACGGTATCTTCGG
TGCAATTACGGCGGTGAATGGCACGAGTGGCGCGTGTGGTGTTGGGGGCT
CCGGCCTCGGGGGCTGTAATAGAACGGGATTTCAGCGCCGGCGACTGCAT
GATGACCTCTTGCAAAAGTTCGAATGACACGGCGTGGGTGGAAACGATCC
TGTTCTTGCACGAGAACAACGACCTCATTCCCGACAACGTGCCTGCGTTT
ACCGAGGATCAAGCCTTGGGTGCTACTCCTGGGCGGCTGCGAAACCCGGT
CTTTGATTTACAACACCTCAACGGGCCGTTCCACACGATATTGGACGACG
GTGACGGAGAATTTGGACGTGTCTTGGATATTTTATATATCACGGAGCGC
GAAACTTGCCTACAGGTTGTATTTTCGTTGGGTTGGGTTACTGAGTTTAC
CTCGACGGTATCTTCGGTGCAATTACGGCGGTGA
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