mRNA_H-paniculata_contig1913.4800.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 3.480e-21 Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSND-TAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
P +ARVARVV GAPAS AV+ERDFS MMTS + + D T +VE ILFLH N DLIP+++ TE A PGRL NPV L+ L+G F
Sbjct: 7 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANPVEGLEQLDGAF 97
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 100 bits (248), Expect = 8.060e-20 Identity = 59/120 (49.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 217 RKLQFGSCATPSHGNCLDSVPW------PLPYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
R +Q GS A +C D + W P +ARVARVV GAPAS AV+ERDFS MMTS +S+ D+ +VE I+FLH N DLIP+++ TE A PGRL NPV L+ L+G F
Sbjct: 591 RAVQGGSLAPGL--SCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLDGVF 708
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.140e-18 Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 217 RKLQFGSCATPSHGNCLDSVPW------PLPYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
R +Q GS A C D + W P +ARVARVV+GA AS AV+E DFS MMTS +S+ D+ +VE ILFLH N DLIP+++ TE A PGRL NPV L+ L+G F
Sbjct: 364 RAVQGGSLAAGLR--CEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVARTKIPGRLANPVEGLEQLDGAF 481
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.170e-18 Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPFHTI-LDDGDGEFG 594
P +AR ARVV GAPAS AV+ERDF+ CMM S +S+ D +VE +LFLH N DLIP+ +P ++ PGRL NP+ +L L+G + L + +G G
Sbjct: 559 PLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGLDGTLGLVDLTNDEGGVG 661
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.070e-17 Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 304 VARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAW-VETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
VARVV GAPAS A +ERDFS MMTS +S+ D+ + VE ILFLH N DLIP+++ TE A PGRL NPV L+ L+G F
Sbjct: 12 VARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTLTEAVARTMFPGRLANPVEGLKQLDGAF 97
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.570e-16 Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 262 CLDSVPW------PLPYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRLRNPVFDLQHLNGPF 558
C D + W P +ARVARVV GAPAS AV+E FS M TS +S+ D+ +VE I+FLH N +LIP+++ TE A PGRL NPV L+ L+G F
Sbjct: 140 CEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVVARTKFPGRLANPVDGLEPLDGAF 244
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 9.940e-15 Identity = 47/103 (45.63%), Postives = 60/103 (58.25%), Query Frame = 1
Query: 289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGAT---PGRLRNPVFDLQHLNGPFHTILDDGDGE 588
P +ARVARVV APAS V ERD + MMTS +S+ D +VE +LFLH N DL+P+ +P D G PGRL NP+ +L L+G F + D E
Sbjct: 661 PLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDE 763
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.260e-12 Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPA 474
P +AR ARVV GAPAS AV+E DF +MTS +S+ D +VE ILFLH N DLIP+++PA
Sbjct: 49 PLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPA 110
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 3.960e-8 Identity = 39/94 (41.49%), Postives = 47/94 (50.00%), Query Frame = 1
Query: 289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGAT----PGRLRNPVFDLQHLNGPF 558
P +AR RVV GAPAS A +VE ILFLH N DLIPD++PA D AT PGRL+NP L+ ++G F
Sbjct: 49 PLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAF 119
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Match: A0A2V3IDA5_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDA5_9FLOR) HSP 1 Score: 63.5 bits (153), Expect = 9.250e-8 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 289 PYMARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENNDLIPDNVPAFTEDQALGATPGRL 516
P ++ VAR VLG P S A I+RDF ++S ++ +D+A+V+ +LFLH N DLIP +VP + + P RL
Sbjct: 256 PSLSVVARAVLGHPVSSARIDRDFGTAGSFLSSRRTRHDSAFVDMLLFLHCNLDLIPSDVPEMSNPEWKSQIPARL 331 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1913.4800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1913.4800.1 >prot_H-paniculata_contig1913.4800.1 ID=prot_H-paniculata_contig1913.4800.1|Name=mRNA_H-paniculata_contig1913.4800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp MARVARVVLGAPASGAVIERDFSAGDCMMTSCKSSNDTAWVETILFLHENback to top mRNA from alignment at H-paniculata_contig1913:10723..11625+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1913.4800.1 ID=mRNA_H-paniculata_contig1913.4800.1|Name=mRNA_H-paniculata_contig1913.4800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=903bp|location=Sequence derived from alignment at H-paniculata_contig1913:10723..11625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1913:10723..11625+ >mRNA_H-paniculata_contig1913.4800.1 ID=mRNA_H-paniculata_contig1913.4800.1|Name=mRNA_H-paniculata_contig1913.4800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig1913:10723..11625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |