mRNA_H-paniculata_contig1911.4795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1911.4795.1
Unique NamemRNA_H-paniculata_contig1911.4795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.340e-95
Identity = 146/178 (82.02%), Postives = 155/178 (87.08%), Query Frame = 3 
Query:  129 KFFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHNGSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYSGLQLPLPLPLSGALDTEVTIGGQDDLPVYTSLPASQQEERIELE 662
            KFFHCYLLQSQDP+HKRSTYIGFTVDP RRIRQHNG I GGA+RTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRI VKV DLP+DSRR  GVP KLRLCKAMLCLDPWARYGLGIRFLREE AASYS L LP PLP+ G  DTE++ G Q+ LPVY S P SQ EER+E +
Sbjct:    9 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIIGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVPDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYSKLNLPQPLPVKGDPDTELSTGAQEGLPVYKSPPGSQ-EERLEAQ 185
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: A0A6P8RDD4_GEOSA (Structure-specific endonuclease subunit SLX1 n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8RDD4_GEOSA)

HSP 1 Score: 165 bits (418), Expect = 1.010e-43
Identity = 103/257 (40.08%), Postives = 141/257 (54.86%), Query Frame = 3 
Query:  132 FFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHN-GSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASY-SGLQLPLPLPLS-GALDTEVTIGGQDDLPVYTSLPASQQEERI----ELENRCTDCSECLMPFDHGVSVMRCYACGM-MAAHVHCLAKRFLREAGDPVEVIPREGRCPRSTCAQRLLWAMLVR 878
            FF  YLL   +P+ K   YIGFTV+P RRI QHN G   GGA+RT  + PWDMV I+HGFPS  +AL+FE AWQHP   RR++     +   SR+ S     +R+  +MLC+ PW R  L IR+L++E    + S L+ PL +PL+ G +  +     +D      S  A    E +    +L  +C  CS C   F     ++ C+  G  M AH+ CLA  FL  +G+P   IP EG+CP   C   +LW  L+R
Sbjct:    8 FFGVYLLFCTNPKFKGRIYIGFTVNPERRITQHNAGKHKGGAWRTSGRGPWDMVLIIHGFPSDIAALRFEWAWQHPHTSRRLT----HVSRKSRQESSFDFHIRVMASMLCVAPWNRLPLTIRWLKQEYRRDFPSQLEPPLHMPLAFGQVRAKAPSRAKDGKKNTESRAAGDPGELLSSQWDLSRQC--CSVCYQRFQSKDDILHCFQHGCTMIAHLICLADEFL--SGEPQHFIPVEGQCPG--CKHTMLWGDLIR 254
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: A0A433U7M1_ELYCH (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433U7M1_ELYCH)

HSP 1 Score: 164 bits (415), Expect = 3.300e-43
Identity = 104/275 (37.82%), Postives = 149/275 (54.18%), Query Frame = 3 
Query:  132 FFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHN-GSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASY-SGLQLPLPLPL--SGALDTEVTIGGQDDLPVYTSLPASQQEERIELENRCTDCSECLMPFDHGVSVMRCY--ACGMMAAHVHCLAKRFLREAGDPVEVIPREGRCPRSTCAQRLLWAMLVRGAS-TYLSRTSVEICPNPDS 935
            F+  YLL   +P+ K  TYIG+TV+P RRI+QHN G+  GGAYRT  + PW+MV IVHGFP+  S L+FE AWQHP + RR+      +P  SR+ S    + R+   ML   PW   GL +R+L++E    +  GL+ PL +P+     L  +VT   +    +  S   S  +  ++ E   + C+ C MP     +V+ C   +C M A H+ CLAK FL    D   ++P EG+CP   C   LLW  L+R     Y + +  ++ P  DS
Sbjct:    8 FYGVYLLLCLNPKFKGRTYIGYTVNPNRRIKQHNTGTHAGGAYRTSGRGPWEMVLIVHGFPNDVSGLRFEWAWQHPDKSRRLR----GVPGKSRKESAFQHRWRVVCNMLRTAPWCGLGLSVRWLKQEYKLDFPDGLEPPLHMPVVYGPVLSKKVTKSQKGTSRIAPSQ-VSLDDANVQTEMESSVCAVCHMPVMAEDTVLSCLRPSCPMKA-HITCLAKHFLE---DETRLLPIEGKCP--DCCVTLLWGELIRQLKGCYKNLSESDMQPEKDS 271
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: UPI0006C9871E (structure-specific endonuclease subunit slx1 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9871E)

HSP 1 Score: 164 bits (414), Expect = 5.550e-43
Identity = 104/263 (39.54%), Postives = 142/263 (53.99%), Query Frame = 3 
Query:  132 FFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHN-GSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYSG-LQLPLPLPLSGALDTE------------VTIGGQDDLPVYTSLPASQQEERIELENRCTDCSECLMPFDHGVSVMRCYACGMMAAHVHCLAKRFLREAGDPVEVIPREGRCPRSTCAQRLLWAMLVR 878
            FF  YLL  ++P++K  TYIG+TVDPRRRI QHN G   GGA+RT  + PW+MV I+HGFP+ +SAL+FE AWQHPQ  RR+      +     R       L +C AML   PW +  L +R+L +E    YS  L  PL +P++    T                               Q+E R E   +C+ CSE ++P DH V+ ++   C ++A H+ CLAK F +E+GD   ++P EG CP   CA  LLW  L+R
Sbjct:   11 FFGVYLLYCKNPKYKGRTYIGYTVDPRRRINQHNAGQKFGGAWRTSNRGPWEMVLIIHGFPNSTSALRFEWAWQHPQLSRRLK----HVGKKRARQKTFDYLLEVCSAMLNCGPWNKLPLTVRWLDDEFGQKYSTHLTPPLHMPITYGKVTSRKXXXXXXXXXXXXXXXXXXXXXXXXXXRIQEEXREEKMEQCSLCSEPVVP-DHRVNCIK-PDCALVA-HLVCLAKLFCKESGD---ILPVEGSCP--ICATDLLWGDLIR 261
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: UPI001F03346F (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03346F)

HSP 1 Score: 162 bits (410), Expect = 7.240e-43
Identity = 98/260 (37.69%), Postives = 144/260 (55.38%), Query Frame = 3 
Query:  126 NKFFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHNGSIT-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYSGL-QLPLPLPLSGALDTEVTIGGQDDLPVYTSLPASQQEERIEL----ENRCTDCSECLMPFDHGVSVMRCYA--CGMMAAHVHCLAKRFLREAGDPVEV-IPREGRCPRSTCAQRLLWAMLVR 878
            ++F+ CYLL S +P++K  TYIGFTVDP RRIRQHNG I  GGA++T ++ PW+M+  +HGFP++ SAL+FE AWQHP + RR+   V +    S +   V    R+   ML + PW R  L IR+L++E    +  L Q P+ +P+                 VY S+P+ ++ +  ++    E     C  C     +   V+RC    C M++ H+ CLA+ FL   G+     IP EG CP  +C Q LLW  ++R
Sbjct:    7 SRFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIRQHNGGIEKGGAHKTSKRGPWEMILTIHGFPNEISALRFEWAWQHPMKSRRLK-HVVEKKKSSEK--SVQFCFRVLTEMLRVGPWNRLPLTIRWLKDEYMMDFDTLKQPPIHMPI-----------------VYGSIPSWKKPKSADIAREEELETKTCCICKDLLTNKEDVLRCLHSDCDMLS-HIRCLAQTFLTARGEDENFCIPLEGDCP--SCGQNLLWGQIIR 243
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: A0A7D9HCE0_PARCT (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HCE0_PARCT)

HSP 1 Score: 162 bits (409), Expect = 1.160e-42
Identity = 104/266 (39.10%), Postives = 140/266 (52.63%), Query Frame = 3 
Query:  126 NKFFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHNGSIT-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSG---VPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYSGL-QLPLPLPLSGALDTEVTIGGQDDLPVYTSLPASQQEERIELENR--------CTDCSECLMPFDHGVSVMRCYACGM-MAAHVHCLAKRFLREAGDPVEV-IPREGRCPRSTCAQRLLWAMLVR 878
            +KF+ CYLL S +P++K  TYIGFTVDP RRI+QHNG +  GGA +T +K PW+M+  VHGFP++ SAL+FE AWQHP   RR+        I +R+ S    V    R+   ML + PW R  L IR+L+EE    +  L Q P+ +P+                 VY  +P+ ++ +  E  N         C  C   ++  DH    +RC      M AH+ CLAK FL       +  IP EG CP  TC Q LLW  L+R
Sbjct:    7 SKFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIKQHNGGVEKGGANKTSKKGPWEMILTVHGFPNEISALRFEWAWQHPLVSRRLK------RIVARKKSSEKSVEFCFRVLTEMLRVGPWNRLPLTIRWLKEEYKMDFDPLKQPPIHMPI-----------------VYGPIPSWKKPKTSEKGNTSEDELIPVCKICQNLIIIQDH---TLRCLQADCEMTAHIFCLAKTFLSTTKQDADYCIPLEGDCP--TCGQNLLWGELIR 244
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: A0A8C3B2G6_CYCLU (Structure-specific endonuclease subunit SLX1 n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3B2G6_CYCLU)

HSP 1 Score: 160 bits (405), Expect = 5.180e-42
Identity = 100/253 (39.53%), Postives = 139/253 (54.94%), Query Frame = 3 
Query:  132 FFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHN-GSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYS-GLQLPLPLPLSGALDTEVTIGGQDDLPVYTSLPASQQEERIELENRCTDCSECLMPFDHGVSVMRCY--ACGMMAAHVHCLAKRFLREAGDPVEVIPREGRCPRSTCAQRLLWAMLVR 878
            FF  Y+L   +P+ K   YIGFTV+P RRI+QHN G   GGA RT  + PW+MV I+HGFPS  +AL+FE AWQHPQ  RR+S     +P  SR+ S +    R+   ML   PW+R  L  R+L++E    +  GLQ PL +P++         G         S     +EE+ E  +RC  C E +   +     + C+  +CGM + HV CLAK FL+   +P  ++P EG CP   C + +LW  L+R
Sbjct:    8 FFGVYMLYCTNPKFKGRIYIGFTVNPERRIQQHNAGRHRGGAKRTSGRGPWEMVLIIHGFPSDIAALRFEWAWQHPQSSRRLS----HVPQRSRKESSLQFHWRVVSNMLRAAPWSRLPLTARWLKQEYKMDFEPGLQPPLHVPIA--------FGSVRAKKKLQSAGEEVEEEQEEETSRCFLCKELVKASEK----LSCFHPSCGM-SGHVICLAKHFLKS--EPSHLLPVEGECP--ACRRSVLWGSLIR 239
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: UPI001E67772A (structure-specific endonuclease subunit slx1-like isoform X1 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E67772A)

HSP 1 Score: 160 bits (405), Expect = 5.180e-42
Identity = 101/252 (40.08%), Postives = 138/252 (54.76%), Query Frame = 3 
Query:  132 FFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHN-GSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYS-GLQLPLPLPLSGALDTEVTIGGQDDLPVYTSLPASQQEERIELENRCTDCSECLMPFDHGVSVMRCYACGM-MAAHVHCLAKRFLREAGDPVEVIPREGRCPRSTCAQRLLWAMLVR 878
            F+  YLL   +P+++ STYIGFT DP RRI+QHN G   GGA RT  K PW+MV IVHGFP+  SAL+FE AWQHP R RR+   VC+ P   R+ +     L++C  ML   PW+R  L IR+L++E    +  GL+ PL +P++      + +    D+     +   QQ     ++  C  C   +   D     MRC +    + AH+ CLA   L E   P  ++P +G CPR  CA  LLW  LVR
Sbjct:   11 FYGVYLLYCINPKYRGSTYIGFTRDPNRRIKQHNRGRKAGGAIRTSYKGPWEMVLIVHGFPNDISALRFEWAWQHPYRSRRLR-NVCEKP---RKQNKYDFCLQICSHMLRTKPWSRLPLTIRWLKQEYTRDFPVGLEPPLHMPVAYGPVKPIKVTASKDI-----IEVLQQ-----IDEMCFICERMVTQSDK----MRCLSPSCPLVAHIQCLASHML-EKETPGMLLPLDGFCPRCNCA--LLWGDLVR 241
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BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: A0A836CE53_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE53_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.570e-41
Identity = 79/150 (52.67%), Postives = 94/150 (62.67%), Query Frame = 3 
Query:  180 STYIGFTVDPRRRIRQHNGSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYSGLQLPLPLPLSGAL--DTEVTIGGQDDLPVYTS 623
            STYIGFTV P+RRIRQHNG I  GA RT+ KRPW M  +V GFPSKS+ALQFE AWQHP +DR +  KV  L +  R   G+ AKL +CKA++CL+PW RYGLG  F   + AA +    LP    L      D    +G  D L VY S
Sbjct:    2 STYIGFTVHPKRRIRQHNGEIKAGARRTRMKRPWQMALVVTGFPSKSAALQFEWAWQHPYKDRHVKGKVGALALKGRGSYGLKAKLAICKALMCLEPWCRYGLGTHFADNDIAAVFRAAALPDSDALQPRALDDAPRCVGPLDALAVYAS 151
[Close]
BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Match: A0A6D2J4F6_9BRAS (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J4F6_9BRAS)

HSP 1 Score: 161 bits (408), Expect = 2.500e-41
Identity = 85/177 (48.02%), Postives = 109/177 (61.58%), Query Frame = 3 
Query:  117 KKNNKFFHCYLLQSQDPRHKRSTYIGFTVDPRRRIRQHNGSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAASYSGLQLPLPLPLSGALDTEVTIGGQDDLPVYTSLPASQQEE 647
            K  N FF CY+L S  PRHK  TYIGFTV+PRRRIRQHNG IT GAYRTK+KRPW+MV  ++GFP+  SALQFE AWQHP    R S+ V +     +  +G+ +K++L   ML L  W    L + +   + A  Y GL  PLPL +      +V +   DDLP +T + +S Q E
Sbjct:   31 KDGNGFFACYILTSLSPRHKTHTYIGFTVNPRRRIRQHNGEITSGAYRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQHP----RESLAVREAAAAFKSFTGLASKIKLAYTMLNLPAWNSLNLTVNYFSTKYA-HYGGLSPPLPLQM------KVQVCAMDDLPCFTHVDSSSQPE 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1911.4795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ6_ECTSI2.340e-9582.02Endo/excinuclease amino terminal domain-containing... [more]
A0A6P8RDD4_GEOSA1.010e-4340.08Structure-specific endonuclease subunit SLX1 n=2 T... [more]
A0A433U7M1_ELYCH3.300e-4337.82Structure-specific endonuclease subunit SLX1 homol... [more]
UPI0006C9871E5.550e-4339.54structure-specific endonuclease subunit slx1 n=1 T... [more]
UPI001F03346F7.240e-4337.69structure-specific endonuclease subunit SLX1 homol... [more]
A0A7D9HCE0_PARCT1.160e-4239.10Structure-specific endonuclease subunit SLX1 homol... [more]
A0A8C3B2G6_CYCLU5.180e-4239.53Structure-specific endonuclease subunit SLX1 n=1 T... [more]
UPI001E67772A5.180e-4240.08structure-specific endonuclease subunit slx1-like ... [more]
A0A836CE53_9STRA1.570e-4152.67GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A6D2J4F6_9BRAS2.500e-4148.02Structure-specific endonuclease subunit SLX1 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1911contigH-paniculata_contig1911:9349..14644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.6
Seed ortholog evalue6.3e-79
Seed eggNOG ortholog2880.D8LKZ6
KEGG koko:K15078
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0001325,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008821,GO:0009893,GO:0009987,GO:0010604,GO:0010638,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032991,GO:0033043,GO:0033044,GO:0033557,GO:0034641,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045935,GO:0046483,GO:0048256,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090737,GO:0140097,GO:1901360,GO:1904429,GO:1904431,GO:2001252
EggNOG free text desc.5'-flap endonuclease activity
EggNOG OGsKOG3005@1,KOG3005@2759
Ec32 ortholog descriptionGIY-YIG nuclease superfamily
Ec32 orthologEc-11_006130.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons5
Model size1532
Cds size1395
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.3568902-UTR-H-paniculata_contig1911:9348..94021622929463.3568902-UTR-H-paniculata_contig1911:9348..9402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1911 9349..9402 +
1691480872.3552203-UTR-H-paniculata_contig1911:9348..94021691480872.3552203-UTR-H-paniculata_contig1911:9348..9402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1911 9349..9402 +
1622929463.3730345-UTR-H-paniculata_contig1911:10131..101481622929463.3730345-UTR-H-paniculata_contig1911:10131..10148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1911 10132..10148 +
1691480872.3693254-UTR-H-paniculata_contig1911:10131..101481691480872.3693254-UTR-H-paniculata_contig1911:10131..10148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1911 10132..10148 +
1622929463.4308035-UTR-H-paniculata_contig1911:14578..146441622929463.4308035-UTR-H-paniculata_contig1911:14578..14644Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1911 14579..14644 +
1691480872.4202955-UTR-H-paniculata_contig1911:14578..146441691480872.4202955-UTR-H-paniculata_contig1911:14578..14644Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1911 14579..14644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.3838766-CDS-H-paniculata_contig1911:10148..103091622929463.3838766-CDS-H-paniculata_contig1911:10148..10309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 10149..10309 +
1691480872.383318-CDS-H-paniculata_contig1911:10148..103091691480872.383318-CDS-H-paniculata_contig1911:10148..10309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 10149..10309 +
1622929463.3966815-CDS-H-paniculata_contig1911:10774..108021622929463.3966815-CDS-H-paniculata_contig1911:10774..10802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 10775..10802 +
1691480872.3931577-CDS-H-paniculata_contig1911:10774..108021691480872.3931577-CDS-H-paniculata_contig1911:10774..10802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 10775..10802 +
1622929463.4098442-CDS-H-paniculata_contig1911:11165..113831622929463.4098442-CDS-H-paniculata_contig1911:11165..11383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 11166..11383 +
1691480872.4048166-CDS-H-paniculata_contig1911:11165..113831691480872.4048166-CDS-H-paniculata_contig1911:11165..11383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 11166..11383 +
1622929463.4204538-CDS-H-paniculata_contig1911:13590..145781622929463.4204538-CDS-H-paniculata_contig1911:13590..14578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 13591..14578 +
1691480872.4125764-CDS-H-paniculata_contig1911:13590..145781691480872.4125764-CDS-H-paniculata_contig1911:13590..14578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1911 13591..14578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1911.4795.1prot_H-paniculata_contig1911.4795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1911 10149..14578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1911.4795.1

>prot_H-paniculata_contig1911.4795.1 ID=prot_H-paniculata_contig1911.4795.1|Name=mRNA_H-paniculata_contig1911.4795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=465bp
MAKPRDGTKTNCGAVKKNNKFFHCYLLQSQDPRHKRSTYIGFTVDPRRRI
RQHNGSITGGAYRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRR
ISVKVCDLPIDSRRMSGVPAKLRLCKAMLCLDPWARYGLGIRFLREECAA
SYSGLQLPLPLPLSGALDTEVTIGGQDDLPVYTSLPASQQEERIELENRC
TDCSECLMPFDHGVSVMRCYACGMMAAHVHCLAKRFLREAGDPVEVIPRE
GRCPRSTCAQRLLWAMLVRGASTYLSRTSVEICPNPDSIGSVGRARYVDD
GCGGVDGRDRQVSPKLWLVDDSSDDENDEGEWECGSSERGSQYEGEYNSD
GETPAGKSYNDQDSWLSIEHGYQGTVQEDENDVLRESGSPWSLGGRLAGC
DGRPGDSGARISVDLCGGDDDVPLVGSSLGIGEAEEGEQSPPSPPMLSLS
ERLRLRRFAISEHG*
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mRNA from alignment at H-paniculata_contig1911:9349..14644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1911.4795.1 ID=mRNA_H-paniculata_contig1911.4795.1|Name=mRNA_H-paniculata_contig1911.4795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5296bp|location=Sequence derived from alignment at H-paniculata_contig1911:9349..14644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAATCAAACACGATGGTGGAGAGAGCCAAGATGTCGGCCACGGAGTA
ACTGGTGGGTCCTATAATCAGCAGTTCCAAAGTATTTCTGACTTTTATAC
CGGTTAAGCAGTGCAGTCAGCAGAATTTCTGTCAAAATTACCTCCTATCT
ATTACATCTTTCAGTGTGGTAGACAGAAAAAGACTCGATCGATTTATGTG
TGTTGTCACTAGGATTGACTTTCCATTTCACACCAACTCGTTTGCCCACC
GTTTTACATTGGCAAATTTGACAAGACTTGTCATCGGGTATCGTCTAGTT
CTTAGTGCTTGTTCAGGGGAAAGGTTGTGTCTATCAGCCAGCAGGACGGA
GAGAAGATACCCAGTTCCTGTGATCGAAGATTACATCTGACTTTAGCCTT
GTCGTTGCACATATTTCCCATGTCAGCAATATTCCGCGTGCCACTGCAAC
TGTATGTACACTGCTGCATCTCTTTAAATCTCCTTGCTCTGCGAATGAGA
ATTTAGGGATAAGAGAAGATCGACTTACTGGCTGGGTCGGGTTCTCACTC
GGCGCCAGGCGTTAATAGGTTTTATTGCGCTAATTAATGTACACAGTGCA
GCGGCTGCCGTTCATCCTGCTTCGAAGACTGTAAAGGACCAGCTTTCGCA
AGTAGCTCCAGAGTTTCACCAATTGATTAAAAGTACCACTTCCTGAAACA
AGAAGCAACCATTTTACAGACTTGTTTTTGTTACGCTTTTACAGGTACTG
AGTTAATATGACCCAATTTCCCTCGCACGGCAGCCGTTGGTCGCTTCAGC
ATGGCGAAGCCGAGGGATGGGACGAAAACAAACTGCGGCGCTGTCAAGAA
AAACAACAAATTCTTCCATTGCTACTTGCTGCAATCACAAGATCCCAGGC
ACAAACGCTCCACTTATATCGGCTTCACGGTTGATCCACGCCGTCGAATA
CGGCAGCACAAGTGAGAGCTGCACGCCGGTCTGTCGTCCGTTGTACGCTT
TTTGTCAGGTTCATTGTTCGGGAAGTGACTGTAGAGTACAACAGGCACTC
CAAGTTGCCACGTTTAACACCTATACAGGTCGTATACAGGAGATTTGAGA
TTTCTTGCTAGGAAAGTCGACCTGCACGGCTGACCTGGAGTTCATCAATA
GCCCGATATACGTGGTCTGTGCGACGTATTAGATTCCTTCATACGTCGAA
TCAATTTGAGAATTGCTAACCGCCCATCTCTCTATGATCATTTGTGTACT
CGTCGATTCGGAACGATCACGATATGCCCACTATCATCAGCGTCAACCCC
CTGGCGTAAGCCCACCATGTTCTCACTGCTCCTCCCCCCCCCCGCCCCCT
TCCATTCTGTCATCGGACGCCTCTTTGGATGGCACATGCGCCGGCAATCT
GATGCTTTCTCTCGTGGACGTTTTAGTGGATCAATCACTGGCGGCGCGTA
CCGGGTGAGCTGTGCGTCTTTATACGTTGACGGCAACTTCGATATCCCAC
CAATATTAGTGAAATAGTACAAAACACTGGATTTGTTGCTAATAGTTATT
TTCAAATGTGAATGTTGCTCATCCAAACCACTACCAGTACAACATTCGGT
TGGCGGAGTTGACGTGCCAATATTTAGCGAATTTTGTGGCGAAAGATGTT
CATATGGACATGGCTATAAAGTGGTGAGGGGAGAAAAATGATGGATTGTT
CTCACGACTTCACAAAGCTGACAGATCACCATCACGTTTTAAAGCGAGCG
TTGCAATGCATGGTCTAGTAGCCATTTGTTTGAAATCAGTTGTATGCTTG
TGTTCCAACCCTCACAGACGAAGCGAAAACGCCCTTGGGACATGGTGGCG
ATTGTGCACGGCTTCCCGTCGAAGTCATCTGCGCTTCAGTTCGAGGCAGC
TTGGCAACACCCCCAACGAGATCGTCGCATTAGTGTCAAAGTTTGCGACT
TGCCGATCGACTCACGCCGCATGAGTGGGGTTCCGGCCAAGCTGCGGCTT
TGCAAGGCTATGCTCTGCCTCGACCCTTGGGCTAGGTGAGAATCGTTCAC
GTGTACAGTGTCCCCAGAGGTAGTTTCGATAGATTAGTCTCAATATACTG
GACCCCCTGGACCCGCAAGTATAGCACGGCAATTAGTTCCATCGGGTACG
GTTAGCTCGTGGAAGAACAGCGGATGGTATCTTTTTGGTCGTAGCTAATA
GATGCCATACATCGTTTTTCGAGGGGGCACAACCCATATTATTGCTTTAC
CACCCTTGTACCAAAGCGCAATGCGCGAGCAGTTTCTTATCTTATTTTTC
GTGAACACGAAAAAAACTCTGATTTTCAAATGGAAGAGACAGACAACAGA
AATGACCATGAGCAGCGAGACGTATACAGGAAATCATCATTTCTCCTGCA
GGTGGTACGCAGCGCCAACTTGTGGCGGTGGGGCACCTCGGCTTCACTCG
GTGTCTCACCCCTATAAGTGGTCCGCCTCCCCCGTCCAGAAGAAGAGCTC
GACACTCCATTTGCATACATCCGTCGGGTCTGAGCGGGCTCTCAATACCT
CGAGTATTGCTAACAAAATAGTTAGTCGGATGAAATTTACACCGAGGGCG
TGTGCCCGTTCTGGTCTTCCCTCATCGTCACGAAACACGAGTGAATAGAC
ACGAAACACGAGTGAACAGATATACGTACGAGGGTATGCTGTTTCTTCAG
CTGTTCGTATTCCAGTGTACTCGAGTGCAGCGATCCCCTGTAGCACCATG
GGCGTGAATAACAGCAAGTTAAGTCGTATGTACGTGCAACGAATGGTTTA
ACTGGAAGGTGGCGGTGGCTGAACGAGCTTCTGCCAATCCTACAATATGC
ATGACCCTTTGAGAAGAAGAGCTCGATTCTTCACAACATATTATTATGTT
CATGTGTTGAGGTGTTTCTTCAATGTCTGCTTTTGCCATTGCACATTGTC
TCGAGTGCCTTTTCCAATTCTTTGGATCTCCATGTAGGTCTCAGTTCACA
TCTACCGGCCACACCCGACTCAACGAGCATATACCCCTCACCCAAAACAC
AAGATGTAGCGTCAACCTAGTGTGCGATGGCGGGTGTACATACGGGTAAT
GTGTGGGTATGCAAAGCGCATTGCAGCATGCGTGTGAACGCAGTGCACGC
TGGTTTCAGTTGCTGAAACCCCCCTGCGCCCAGTTGCCAACACTACAATT
TAGTACCGTACAGTCGACTGTCTCTGCATAACAAAGTGTTGAACATACCA
GCAGTGCATCACAGTAACCTTAAGACACAACAACCGATTTGGCACACCAG
AAGCGGGGAACAACTAGTAGCAATCGCCGTGTGAAACATTGCAGAGCATG
AAAACATGAGGACTGGGAAAGACGACAACTGTCTATGGTCGGCGGCACGA
ACCGTGTCGAACCACCCAGCAGCACGAAAAAATGTTGCCGTAGATTTAGG
CTGATACCCTGAAACTAAGACGCCAGGTATTGGTGAGGTGGGCTTCATGT
GGACTCAGGCTTTAGAACAAAATGTCACCAGACGCTAGCCAGCAAAGGGC
TTATAGCCAACGCAACCGTAATAGTTGTTTTTAGTAGGTGCAGCTGGCAA
GCGAAGTGTAAGCATTTCTACTGCAATTGTACATAATTGTCTTGGTCGTA
CTTTACTGCTTTCAAAACGGCGAAATAACTAGTGGTTGTCTTTGGTTGGC
GGAAGGCACAGCTAACGCAACCGTGGCTGTTGTCTTTGATCGGGGAGTGA
GCATGTAGCTCGTGGCTGGCAACACTAGCAGCCTTGTTCGTTTCCATGAG
GCATACGCTTCATTGTTTTTCCGAAAAAGAATGAAGTGAATAAATTGAGA
CCTTCATGATCAAAGGGGCATTTCGTCCCAATCGCCCACAGGGAACCTAT
TTACAACAGGAAACAAATGGGGGAACACCACGTTGTTGATGGGAAGGATT
AACTCCAGATCTTATGGCCCTCTACTGGATTGTGGCTTTTGTTTGTGCAA
ATTTCATCGGGTTTTTCGTGTTGTTTATCCCGGCTTTTCATGGTACAAAA
AGCTCGAATTCAGCACAAGTACAACGGCAGCGCTCGCTCGTAACAGGTGT
CTGCAGACCCTAGCAATTCGGGATTTGACTTGGCACGACAACGCCAAGAG
AGGATTAGAAACAAACTCAGACCTCGAGAAAAATCTGGTAACTATCGAAA
AACCATGTTACTTCGCCCTGCTATCCGCCCCCCTCCACGAAGGTATGGAC
TGGGTATACGATTCTTACGAGAAGAGTGCGCCGCCTCGTACAGCGGCTTA
CAGCTACCACTTCCCCTACCATTATCAGGAGCGCTGGACACCGAGGTGAC
CATCGGTGGACAAGACGACCTACCCGTGTACACCTCTCTCCCGGCCTCGC
AGCAAGAAGAGCGGATCGAGTTGGAGAATCGTTGTACGGATTGCTCCGAG
TGCCTGATGCCCTTTGATCACGGCGTCAGTGTTATGCGATGTTACGCCTG
CGGTATGATGGCCGCTCACGTGCATTGTCTGGCGAAACGGTTTCTCAGGG
AAGCCGGAGACCCTGTTGAGGTTATCCCGCGCGAGGGTCGTTGTCCGAGG
TCGACGTGTGCACAGCGTCTCCTCTGGGCAATGCTGGTACGAGGAGCAAG
TACCTATCTATCACGGACGAGTGTTGAAATATGTCCCAATCCTGATTCAA
TCGGGTCTGTGGGACGAGCGAGGTATGTGGACGATGGGTGTGGGGGTGTC
GATGGTAGAGATCGCCAAGTATCTCCGAAGCTGTGGCTTGTGGATGACTC
TAGCGATGACGAAAATGACGAAGGCGAATGGGAGTGTGGATCATCCGAAC
GCGGAAGTCAATATGAAGGAGAATACAATAGTGATGGAGAGACGCCGGCG
GGAAAAAGTTATAATGACCAAGACTCGTGGCTATCGATAGAACATGGGTA
TCAAGGAACAGTTCAGGAGGATGAGAACGATGTACTCAGAGAATCAGGGA
GTCCTTGGTCTTTGGGCGGAAGGTTAGCCGGGTGTGATGGTAGACCGGGT
GACAGTGGTGCCCGTATATCGGTTGACCTGTGCGGTGGCGATGACGATGT
ACCTCTCGTCGGGAGCAGTCTTGGCATCGGAGAAGCAGAGGAGGGTGAGC
AATCACCGCCTTCACCGCCAATGCTTTCGCTATCGGAGCGTTTGCGTTTA
AGGAGATTTGCAATATCGGAGCACGGTTGAATGCAGCAGAGAAATAATAA
AATGTCGCATGTACACAAAACATTCTGGACGGTGCGACGACATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1911:9349..14644+

>mRNA_H-paniculata_contig1911.4795.1 ID=mRNA_H-paniculata_contig1911.4795.1|Name=mRNA_H-paniculata_contig1911.4795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2790bp|location=Sequence derived from alignment at H-paniculata_contig1911:9349..14644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGCCGAGGGATGGGACGAAAACAAACTGCGGCGCTGTCAAGAA
AAACAACAAATTCTTCCATTGCTACTTGCTGCAATCACAAGATCCCAGGC
ACAAACGCTCCACTTATATCGGCTTCACGGTTGATCCACGCCGTCGAATA
CGGCAGCACAAATGGCGAAGCCGAGGGATGGGACGAAAACAAACTGCGGC
GCTGTCAAGAAAAACAACAAATTCTTCCATTGCTACTTGCTGCAATCACA
AGATCCCAGGCACAAACGCTCCACTTATATCGGCTTCACGGTTGATCCAC
GCCGTCGAATACGGCAGCACAATGGATCAATCACTGGCGGCGCGTACCGG
TGGATCAATCACTGGCGGCGCGTACCGGACGAAGCGAAAACGCCCTTGGG
ACATGGTGGCGATTGTGCACGGCTTCCCGTCGAAGTCATCTGCGCTTCAG
TTCGAGGCAGCTTGGCAACACCCCCAACGAGATCGTCGCATTAGTGTCAA
AGTTTGCGACTTGCCGATCGACTCACGCCGCATGAGTGGGGTTCCGGCCA
AGCTGCGGCTTTGCAAGGCTATGCTCTGCCTCGACCCTTGGGCTAGACGA
AGCGAAAACGCCCTTGGGACATGGTGGCGATTGTGCACGGCTTCCCGTCG
AAGTCATCTGCGCTTCAGTTCGAGGCAGCTTGGCAACACCCCCAACGAGA
TCGTCGCATTAGTGTCAAAGTTTGCGACTTGCCGATCGACTCACGCCGCA
TGAGTGGGGTTCCGGCCAAGCTGCGGCTTTGCAAGGCTATGCTCTGCCTC
GACCCTTGGGCTAGGTATGGACTGGGTATACGATTCTTACGAGAAGAGTG
CGCCGCCTCGTACAGCGGCTTACAGCTACCACTTCCCCTACCATTATCAG
GAGCGCTGGACACCGAGGTGACCATCGGTGGACAAGACGACCTACCCGTG
TACACCTCTCTCCCGGCCTCGCAGCAAGAAGAGCGGATCGAGTTGGAGAA
TCGTTGTACGGATTGCTCCGAGTGCCTGATGCCCTTTGATCACGGCGTCA
GTGTTATGCGATGTTACGCCTGCGGTATGATGGCCGCTCACGTGCATTGT
CTGGCGAAACGGTTTCTCAGGGAAGCCGGAGACCCTGTTGAGGTTATCCC
GCGCGAGGGTCGTTGTCCGAGGTCGACGTGTGCACAGCGTCTCCTCTGGG
CAATGCTGGTACGAGGAGCAAGTACCTATCTATCACGGACGAGTGTTGAA
ATATGTCCCAATCCTGATTCAATCGGGTCTGTGGGACGAGCGAGGTATGT
GGACGATGGGTGTGGGGGTGTCGATGGTAGAGATCGCCAAGTATCTCCGA
AGCTGTGGCTTGTGGATGACTCTAGCGATGACGAAAATGACGAAGGCGAA
TGGGAGTGTGGATCATCCGAACGCGGAAGTCAATATGAAGGAGAATACAA
TAGTGATGGAGAGACGCCGGCGGGAAAAAGTTATAATGACCAAGACTCGT
GGCTATCGATAGAACATGGGTATCAAGGAACAGTTCAGGAGGATGAGAAC
GATGTACTCAGAGAATCAGGGAGTCCTTGGTCTTTGGGCGGAAGGTTAGC
CGGGTGTGATGGTAGACCGGGTGACAGTGGTGCCCGTATATCGGTTGACC
TGTGCGGTGGCGATGACGATGTACCTCTCGTCGGGAGCAGTCTTGGCATC
GGAGAAGCAGAGGAGGGTGAGCAATCACCGCCTTCACCGCCAATGCTTTC
GCTATCGGAGCGTTTGCGTTTAAGGAGATTTGCAATATCGGAGCACGGTT
GAGTATGGACTGGGTATACGATTCTTACGAGAAGAGTGCGCCGCCTCGTA
CAGCGGCTTACAGCTACCACTTCCCCTACCATTATCAGGAGCGCTGGACA
CCGAGGTGACCATCGGTGGACAAGACGACCTACCCGTGTACACCTCTCTC
CCGGCCTCGCAGCAAGAAGAGCGGATCGAGTTGGAGAATCGTTGTACGGA
TTGCTCCGAGTGCCTGATGCCCTTTGATCACGGCGTCAGTGTTATGCGAT
GTTACGCCTGCGGTATGATGGCCGCTCACGTGCATTGTCTGGCGAAACGG
TTTCTCAGGGAAGCCGGAGACCCTGTTGAGGTTATCCCGCGCGAGGGTCG
TTGTCCGAGGTCGACGTGTGCACAGCGTCTCCTCTGGGCAATGCTGGTAC
GAGGAGCAAGTACCTATCTATCACGGACGAGTGTTGAAATATGTCCCAAT
CCTGATTCAATCGGGTCTGTGGGACGAGCGAGGTATGTGGACGATGGGTG
TGGGGGTGTCGATGGTAGAGATCGCCAAGTATCTCCGAAGCTGTGGCTTG
TGGATGACTCTAGCGATGACGAAAATGACGAAGGCGAATGGGAGTGTGGA
TCATCCGAACGCGGAAGTCAATATGAAGGAGAATACAATAGTGATGGAGA
GACGCCGGCGGGAAAAAGTTATAATGACCAAGACTCGTGGCTATCGATAG
AACATGGGTATCAAGGAACAGTTCAGGAGGATGAGAACGATGTACTCAGA
GAATCAGGGAGTCCTTGGTCTTTGGGCGGAAGGTTAGCCGGGTGTGATGG
TAGACCGGGTGACAGTGGTGCCCGTATATCGGTTGACCTGTGCGGTGGCG
ATGACGATGTACCTCTCGTCGGGAGCAGTCTTGGCATCGGAGAAGCAGAG
GAGGGTGAGCAATCACCGCCTTCACCGCCAATGCTTTCGCTATCGGAGCG
TTTGCGTTTAAGGAGATTTGCAATATCGGAGCACGGTTGA
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