mRNA_H-paniculata_contig18998.4752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18998.4752.1
Unique NamemRNA_H-paniculata_contig18998.4752.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: D7FU34_ECTSI (AAA_31 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU34_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 2.620e-126
Identity = 188/210 (89.52%), Postives = 198/210 (94.29%), Query Frame = 1 
Query:    1 QAGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVIMTEGD 630
            QAGH+TCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQC+LNQALIQDRR P LSLLAASQTKDKEALTQ GVTRVIR+LQK+F YVVCDSPAGIESG      ARHAMYLADEAVIVTNPEVSSCRDSDKMVGFI+SKSRRAETG+APVRQTLLVTRYDP RAE+N+MLTL DIQELLGLEVLGLIPESKAVLTATNLGQPVI++EGD
Sbjct:   97 QAGHRTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCTLNQALIQDRRNPGLSLLAASQTKDKEALTQEGVTRVIRELQKSFDYVVCDSPAGIESG------ARHAMYLADEAVIVTNPEVSSCRDSDKMVGFIASKSRRAETGQAPVRQTLLVTRYDPARAESNEMLTLADIQELLGLEVLGLIPESKAVLTATNLGQPVIVSEGD 300
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BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: A0A4D9DHA4_9STRA (AAA_31 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHA4_9STRA)

HSP 1 Score: 286 bits (732), Expect = 1.090e-94
Identity = 139/203 (68.47%), Postives = 171/203 (84.24%), Query Frame = 1 
Query:    7 GHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVI 615
            G KTCVIDFDIGLRN+D+HLG ERRVIFDFV+V+Q  C+L QA+I+D+R P L LLAASQTKDK ALT   V +++ ++++ F +++CDSPAGIESG      ARHAMY AD+A+IVTNPE+SSCRDSDKM+GFISS+S+RAE G+ PVRQ+LLVTRYDP RA+  + L L DI+ELLGLE+LG+IPESK +LTATNLGQPVI
Sbjct:   37 GKKTCVIDFDIGLRNLDIHLGAERRVIFDFVHVLQGDCTLKQAMIKDKRNPNLFLLAASQTKDKNALTVDAVGKMLAEMRREFDFIICDSPAGIESG------ARHAMYFADDAIIVTNPELSSCRDSDKMIGFISSRSKRAELGQEPVRQSLLVTRYDPERAQKEECLRLEDIKELLGLELLGVIPESKCILTATNLGQPVI 233
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BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: A0A6U2QQG7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2QQG7_9STRA)

HSP 1 Score: 286 bits (733), Expect = 3.140e-94
Identity = 144/206 (69.90%), Postives = 172/206 (83.50%), Query Frame = 1 
Query:    7 GHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGE---APVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVI 615
            GHKTCV+DFDIGLRN+D+HLG ERRVIFDFVNV+  +C+LNQALI+D+R PM+S+LAASQT+DKE+LT  GV +V+  L + F +VV DSPAGIESG      ARHAMY AD+AVIVTNPE+SSCRD+DKMVGFISS+SRRAE GE     V QTLL+TRYDPVRAE  + L + DI+ELLGL V+G+IPESK++LT TNLGQPVI
Sbjct:   79 GHKTCVVDFDIGLRNLDIHLGMERRVIFDFVNVLLGECTLNQALIKDKREPMMSMLAASQTRDKESLTVDGVEKVLADLSQQFDFVVLDSPAGIESG------ARHAMYFADDAVIVTNPELSSCRDADKMVGFISSRSRRAEMGENETKSVTQTLLITRYDPVRAEAEESLAIADIEELLGLPVVGVIPESKSILTCTNLGQPVI 278
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BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: A0A6H5L222_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L222_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 3.650e-94
Identity = 144/162 (88.89%), Postives = 151/162 (93.21%), Query Frame = 1 
Query:    4 AGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFY---RARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRY 480
            AGH+TCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQC+LNQALIQDRR P LSLLAASQTKDKEALTQ GVTRVIR+LQK+F YVVCDSPAGIESG+       RARHAMYLADEAVIVTNPEVSSCRDSDKMVGFI+SKSRRAETG+APVRQTLLVTRY
Sbjct:   47 AGHRTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCTLNQALIQDRRNPGLSLLAASQTKDKEALTQEGVTRVIRELQKSFDYVVCDSPAGIESGESKGVPRMRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFIASKSRRAETGQAPVRQTLLVTRY 208
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BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: G4Z8F7_PHYSP (Putative septum site-determining protein MinD n=17 Tax=Peronosporaceae TaxID=4777 RepID=G4Z8F7_PHYSP)

HSP 1 Score: 281 bits (719), Expect = 1.170e-92
Identity = 136/210 (64.76%), Postives = 173/210 (82.38%), Query Frame = 1 
Query:    1 QAGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVIMTEGD 630
            Q G +TC+IDFDIGLRN+DLHLGCERRVIFDF++VI++ C L QALI+D+R   LSLLAASQT+DKEALT+ GV +V+ +L+  F +++CDSPAGIESG      ARHAMY AD+A++VTNPE+SSCRDSDKM+GFI+SKS RA+ G APV+Q LLV RYD  R +N+D L++ DI+E+LGL V G+IPES  VLT++N+GQPVI  EG+
Sbjct:   41 QRGFRTCLIDFDIGLRNLDLHLGCERRVIFDFIHVIEKNCRLGQALIRDKRLDKLSLLAASQTRDKEALTEEGVEQVLDELRTQFDFILCDSPAGIESG------ARHAMYFADDAILVTNPEISSCRDSDKMIGFIASKSLRAKEGRAPVQQRLLVNRYDANRVKNDDCLSVDDIEEMLGLPVCGVIPESAHVLTSSNMGQPVITAEGE 244
[Close]
BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: A0A7S2WWU1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWU1_9STRA)

HSP 1 Score: 282 bits (722), Expect = 2.020e-92
Identity = 139/205 (67.80%), Postives = 167/205 (81.46%), Query Frame = 1 
Query:    1 QAGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVI 615
            + GH+TC +DFDIGLRN+DLHLG ERRVIFDFVNVI  +C+LNQALI+DR  P L LLAASQT+DK+ LT  GV RV+  L++ F Y+V DSPAGIE+G      ARHAMY AD+AVI  NPE+SSCRDSDKM+GFI+S+S+R+E G  PVRQ LL+ RYD  R E+ +ML L DIQELLGLE++G+IPESKAVLTATNLGQPV+
Sbjct:   90 KMGHRTCAVDFDIGLRNLDLHLGAERRVIFDFVNVINGECNLNQALIKDRHNPNLFLLAASQTRDKDVLTVEGVQRVLDDLKQQFEYIVLDSPAGIEAG------ARHAMYFADDAVITVNPELSSCRDSDKMIGFIASRSKRSEEGLEPVRQMLLINRYDASRVESQEMLQLDDIQELLGLELIGVIPESKAVLTATNLGQPVV 288
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BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: A0A7S4V4S5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V4S5_9STRA)

HSP 1 Score: 281 bits (719), Expect = 5.050e-92
Identity = 144/210 (68.57%), Postives = 172/210 (81.90%), Query Frame = 1 
Query:    7 GHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEA--PVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVIMTEGD 630
            GHKTCV+DFDIGLRN+D+HLG ERRVIFDFVNV+ E+CSL+QALI+D+R   LS+LAASQT+DKE+LT  GV +V+  L KTF YVV DSPAGIESG      ARHAMY AD+A+IVTNPE+SSCRD+DKMVGF+SS+SRRAE G+   PV QTLL+TRYD  RA   + L+L DI+ELLGL ++G+IPESK VLT TNLG P+I T GD
Sbjct:   86 GHKTCVVDFDIGLRNLDIHLGMERRVIFDFVNVLMEECSLSQALIKDKREKHLSMLAASQTRDKESLTVEGVEKVLADLSKTFDYVVLDSPAGIESG------ARHAMYFADDAIIVTNPELSSCRDADKMVGFVSSRSRRAEIGDDVDPVSQTLLITRYDAQRAVAEECLSLNDIEELLGLPIIGVIPESKDVLTCTNLGTPII-TLGD 288
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BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: H3GKX9_PHYRM (Putative septum site-determining protein MinD n=6 Tax=Peronosporaceae TaxID=4777 RepID=H3GKX9_PHYRM)

HSP 1 Score: 280 bits (715), Expect = 7.260e-92
Identity = 135/210 (64.29%), Postives = 172/210 (81.90%), Query Frame = 1 
Query:    1 QAGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVIMTEGD 630
            Q G +TC+IDFDIGLRN+DLHLGCERRVIFDF++VI++ C L+QALI+D+R   LSLLAASQT+DKEALT+ GV  V+ +L+  F +++CDSPAGIESG      ARHAMY AD+A++VTNPE+SSCRDSDKM+GFI+SKS RA+ G  PV+Q LLV RYD  R +N+D L++ DI+E+LGL V G+IPES  VLT++N+GQPVI  EG+
Sbjct:   54 QRGFRTCLIDFDIGLRNLDLHLGCERRVIFDFIHVIEKNCRLSQALIKDKRLERLSLLAASQTRDKEALTEDGVEEVLDELRTQFDFILCDSPAGIESG------ARHAMYFADDAILVTNPEISSCRDSDKMIGFIASKSLRAKEGREPVQQRLLVNRYDANRVKNDDCLSVDDIEEMLGLPVCGVIPESSHVLTSSNMGQPVITAEGE 257
[Close]
BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: A0A6A3JCG4_9STRA (Putative septum site-determining protein MinD n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JCG4_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.140e-91
Identity = 136/210 (64.76%), Postives = 172/210 (81.90%), Query Frame = 1 
Query:    1 QAGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVIMTEGD 630
            Q G +TC+IDFDIGLRN+DLHLGCERRVIFDF++VI++ C L QALI+D+R   LSLLAASQT+DKEALT+ GV  V+ +L+  F +++CDSPAGIESG      ARHAMY AD+A++VTNPE+SSCRDSDKM+GFI+SKS RA+ G APV+Q LLV RYD  R +N+D L++ DI+E+LGL V G+IPES  VLT++N+GQPVI  EG+
Sbjct:   57 QRGFRTCLIDFDIGLRNLDLHLGCERRVIFDFIHVIEKNCRLGQALIRDKRLDKLSLLAASQTRDKEALTEEGVELVLDELRAQFDFILCDSPAGIESG------ARHAMYFADDALLVTNPEISSCRDSDKMIGFIASKSLRAKEGRAPVQQRLLVNRYDANRVKNDDCLSVDDIEEMLGLPVCGVIPESAHVLTSSNMGQPVITAEGE 260
[Close]
BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Match: A0A024FYX2_9STRA (AAA_31 domain-containing protein n=5 Tax=Albugo TaxID=65356 RepID=A0A024FYX2_9STRA)

HSP 1 Score: 278 bits (712), Expect = 2.210e-91
Identity = 135/210 (64.29%), Postives = 172/210 (81.90%), Query Frame = 1 
Query:    1 QAGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDRRTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGKDAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAPVRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNLGQPVIMTEGD 630
            + G++TC+IDFDIGLRN+DLHLGCERRVIFDF++VI++ C LNQALI+D+R   LSLLAASQT+DKEALT++GV +V+  L++ F Y++CDSPAGIESG      ARHAMY ADEA+IVTNPE+SSCRDSDKMVG+ISS S RA     PV QTLL+ RYD  R ++++ L++ DI+E+LGL VLG+IPES  VLT++N+GQPVI   G+
Sbjct:   56 ERGYRTCLIDFDIGLRNLDLHLGCERRVIFDFIHVIEKNCRLNQALIKDKRLENLSLLAASQTRDKEALTEAGVEKVLDDLKQQFDYIICDSPAGIESG------ARHAMYFADEAIIVTNPEISSCRDSDKMVGYISSSSLRAIENRQPVHQTLLINRYDANRVKSDECLSVHDIEEMLGLSVLGVIPESAHVLTSSNMGQPVITATGE 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18998.4752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU34_ECTSI2.620e-12689.52AAA_31 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9DHA4_9STRA1.090e-9468.47AAA_31 domain-containing protein n=2 Tax=Monodopsi... [more]
A0A6U2QQG7_9STRA3.140e-9469.90Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6H5L222_9PHAE3.650e-9488.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4Z8F7_PHYSP1.170e-9264.76Putative septum site-determining protein MinD n=17... [more]
A0A7S2WWU1_9STRA2.020e-9267.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4V4S5_9STRA5.050e-9268.57Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
H3GKX9_PHYRM7.260e-9264.29Putative septum site-determining protein MinD n=6 ... [more]
A0A6A3JCG4_9STRA1.140e-9164.76Putative septum site-determining protein MinD n=1 ... [more]
A0A024FYX2_9STRA2.210e-9164.29AAA_31 domain-containing protein n=5 Tax=Albugo Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18998contigH-paniculata_contig18998:1319..4769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue2.5e-99
Seed eggNOG ortholog2880.D7FU34
KEGG koko:K03609
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0010020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030899,GO:0031967,GO:0031975,GO:0042623,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048285,GO:0071840
EggNOG free text desc.Component of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins
EggNOG OGsCOG0489@1,KOG3022@2759
Ec32 ortholog descriptionATP binding protein MinD, bacterial-type
Ec32 orthologEc-25_000810.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons5
Model size630
Cds size630
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18998.4752.1prot_H-paniculata_contig18998.4752.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18998 1319..4769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.3670304-CDS-H-paniculata_contig18998:1318..14291622929456.3670304-CDS-H-paniculata_contig18998:1318..1429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 1319..1429 +
1691480869.2634768-CDS-H-paniculata_contig18998:1318..14291691480869.2634768-CDS-H-paniculata_contig18998:1318..1429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 1319..1429 +
1622929456.3808393-CDS-H-paniculata_contig18998:1698..18861622929456.3808393-CDS-H-paniculata_contig18998:1698..1886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 1699..1886 +
1691480869.275369-CDS-H-paniculata_contig18998:1698..18861691480869.275369-CDS-H-paniculata_contig18998:1698..1886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 1699..1886 +
1622929456.3975787-CDS-H-paniculata_contig18998:2341..23551622929456.3975787-CDS-H-paniculata_contig18998:2341..2355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 2342..2355 +
1691480869.2847178-CDS-H-paniculata_contig18998:2341..23551691480869.2847178-CDS-H-paniculata_contig18998:2341..2355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 2342..2355 +
1622929456.4105678-CDS-H-paniculata_contig18998:2602..27701622929456.4105678-CDS-H-paniculata_contig18998:2602..2770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 2603..2770 +
1691480869.2929077-CDS-H-paniculata_contig18998:2602..27701691480869.2929077-CDS-H-paniculata_contig18998:2602..2770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 2603..2770 +
1622929456.4238439-CDS-H-paniculata_contig18998:4620..47691622929456.4238439-CDS-H-paniculata_contig18998:4620..4769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 4621..4769 +
1691480869.3012114-CDS-H-paniculata_contig18998:4620..47691691480869.3012114-CDS-H-paniculata_contig18998:4620..4769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18998 4621..4769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18998.4752.1

>prot_H-paniculata_contig18998.4752.1 ID=prot_H-paniculata_contig18998.4752.1|Name=mRNA_H-paniculata_contig18998.4752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
QAGHKTCVIDFDIGLRNMDLHLGCERRVIFDFVNVIQEQCSLNQALIQDR
RTPMLSLLAASQTKDKEALTQSGVTRVIRQLQKTFAYVVCDSPAGIESGK
DAFYRARHAMYLADEAVIVTNPEVSSCRDSDKMVGFISSKSRRAETGEAP
VRQTLLVTRYDPVRAENNDMLTLTDIQELLGLEVLGLIPESKAVLTATNL
GQPVIMTEGD
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mRNA from alignment at H-paniculata_contig18998:1319..4769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18998.4752.1 ID=mRNA_H-paniculata_contig18998.4752.1|Name=mRNA_H-paniculata_contig18998.4752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3451bp|location=Sequence derived from alignment at H-paniculata_contig18998:1319..4769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGGTCACAAAACCTGCGTGATCGACTTCGATATCGGACTGAGGAA
TATGGATTTACATCTAGGCTGCGAGCGCCGCGTCATATTTGACTTCGTCA
ATGTTATACAGGTATGCTATGTATGCTATGTATGCTATGTATGCTATGTA
TGTATGCAGCAGTAGGCGTTGGGTGTGTACTGTCCGCCTCCAGCCAAATG
AAAGGGAGCCTCCCAGCACCTTTCAAATATTTCCATCTCGGAGAGCCTCC
GCCCCGCCCCCCTCCGGTACGTACACATGCACGTATCAATGACCCCCTTC
CATCCCCCGGCGCTCGCGTATTTGTTCGGTGTGCTTTGTCCGATTTTTTC
TGTACTCTGTGTGTTGTTTTTACCTTGCAGGAGCAGTGTTCGCTGAATCA
GGCCTTAATTCAGGATCGCCGAACGCCGATGCTTAGCCTCTTAGCGGCTT
CGCAGACCAAAGACAAGGAGGCGTTGACACAAAGCGGGGTCACCCGGGTG
ATTCGCCAGCTGCAGAAGACCTTCGCCTACGTGGTGTGTGACAGCCCCGC
TGGAATCGAGTCGGGCAAGTTCATCATCGTTGCATTACTTTACAGAAGAT
TCTGCTTATAATCATGTGACCTCTGATGATCCTTGGTACTAAATATGGTC
ATGATCCATGATCCATGATCCATGATCCATGATGACGATGACGATGATAC
CGATGGTGATGGTGATGGTGATGAAGGCGGTCCATTTGGAATTGTTTCCA
TCCTCTATTATCCAGGTCGTTTCTTTCAAAGTGGCAAACGCCAGAGACGT
ATGTAGTTACGGGCTGCATATTGCTGGTATTCAATACAATTCAGCACAAT
ACAGTGCTCCAAGTCCTCCGTTTACCGTATTTACGCTTCCACGTAATGAG
GAATCCCGAATCCCATAAATCCGCGTCGAAGTGTTTGTAGATACATTTTT
AAACATCTACCCATGCACCAACCATTACCGCGTCTGTATTATGTCATGAT
CCTAATTATCCCAGTCTGTGAAGAGATGCATTTTACCGTTAGCGCAAGCA
TCAAGCATTGCCACATATCTCACGTCATACGAATTGATCGTTCTGTCTAC
TACGGTAGGTGTGCACAGCAAGCCACGTATTTGGCGAAGCACCAACCATG
CCATATGTGTCAGTCATATAAACTGATATTTATGTCTATTACCGTAGGTG
TGCACAGCATGACACGCATCTGACGAAGAACCAACCGTGCCACATGTATC
GCGTCATATGAACTGGTGTTTCCGCCTACTGTAGGTGCACGGCATGCCAT
GTATCTGGCGGACGAGGCGGTGATCGTAACCAACCCGGAAGTGTCTTCGT
GCCGAGACAGCGACAAGATGGTCGGATTTATTTCGAGCAAGTCTCGACGC
GCGGAGACAGGGGAAGCTCCAGTGCGACAGACACTCCTCGTCACAAGATA
CGGTATGTGGAGTACCGTAGAACAAATCCGGAGGTGGGTATCGATATTAT
CAGGGTTGCACACCGTTTTGATTATTTCAAGAATGGAGACAGGCCTTATG
CGGTCGAAAAGATCTCGTGAACCAATTCTTGCTGCGTCCCGAAAGAAAAA
AAAATAATGACCGTTTTAAACGCGAAGTCGACACTTGAATCTCCTGAAGC
TGTTCCAACGGCACAATATGTATTCGTTGTTAGTAGCTAGCTAACGACGT
AGTTGTTGTTGTCGAGACAATCAATCATAGTATTTGGAAAGCGTTTGCAC
CCCGATCATATCGATACCTGCTTCCAGATTTGTTTTCGGGCAGTATGATA
GATGTACATGAAGAAGGGAAGGGCGCATCTGCTTGCTTGCTATGGTACAG
TCAGTACTAACAACAAGTCGGATCTGACCGGAGCAAGATTTTTCATTTAT
GTTTGCGAGCTTTTGTCAAGTCGTCAAATTCGCTCGCTGGATCAAAGTGT
GTGAAAGCTTTTGCAAGCTGGGGTTCATGATTTTGAAGATGATTGTTCCG
TTTTACGTCTATAACTCGCGCCGTAGCGTACGCGCGATAGACTGTCGCAA
CATCATACAGTCACTCGTGCTCGGCAAAGTCTATACTGAAGACAAGTGGA
ATATGACGGAAGCGAGCTTTTTGCCATCATGTTTTCGAACGCCATTAAGT
CGTTAATTCGGCCCGTTGAACCAAACTGCTTGAAACCGTTTGCAACATGA
GGTTAATGATCTGGAGTACATGATACGGTCTCAACTTCCATAGCTCGCGC
TGCAGCGTCAGCGCGGTAGACTATCGCAAACGAACTAATTACTAGATAGG
ATTTAGAGAGAGCACTGCGGGCACGAGGTAAGAAGTACTTGTCGGTCCCA
AATCGGTCGTTTTTTCATCAAATCATACGCATGGATATGAAGGTAGGTCA
TTTGTGGTGATGACCGGATATTCTCGGACTTGAAGGAAATTGAGAGTGAC
GTACCACTCGCGAAACGTTTTTGTTTCCGCCGCGTTTTGGGGAGATCGTT
TCTGCCCACGCTTGCACTTACCACGCGGCGCCGCGCGGTGTCCGTAGTAT
TCCTCAAATTTCACACGGTGACGTGATTCGGCCGTCTAAAAGAATACCCC
AAAACACGCCGGAAAAAAAACGTTTCGCGGTTCGCAGAATATTTCTAGGA
ACTGTTTTGGGCCGTTTTTATTAGACCCGTCATCAAAATTAATTTTATTC
GACCTTGAGCACGAGAACATCACGTTGAATAATGTGAGGGTAACGCACAA
ACAAGACACAAACGGCATTGTAGTGTGACTGAGCAAGAGTCTAGAGCGTG
AAACAATGCTCTACAATTTAGGATTGAAGATACTATGTAGTAACAGCACA
TGACTGCAGCATGTCATTGTTCCTGTCCTTGGCCTTCCTTTTCACCAAGA
TGCTTTTTGCCAAATTGTCGAATGCCATGGTTGAGGTATCCAAATTCAGC
ATGCTATGATGACAGATGACGTCACACCGATGTCACGCCCTGGAGGGCCC
ACACTATGTGTGTGTGTGTGTAAATGTGTCCGCCAAAAAACCTGTGGTGC
TTGCAAATGGCGCCAACGGCGTCGATATGAGCGCTGCCAATGCACACCAA
CCCTAGAAGGTACAGGGGTCAGAGCCAGGGGTAGTGGTTATAAATTCGGA
TTCGCGTTGGCCACAAACAAAGCGTGAATCACATACCAAAGAACTGTCAA
CCATCGCATTCAATGAAGTTCTAAACATGGCCTCGGTCTATTTTTTCTGT
TGGTTATTGGTCGTTGGTCGTTGGTCGTTGGTCGTTGATTGTGTTCTTGT
AGACCCTGTTAGGGCTGAGAACAACGACATGCTGACGCTGACGGATATCC
AAGAGCTGCTGGGACTGGAAGTGCTTGGGCTAATTCCAGAGTCCAAGGCT
GTGCTGACGGCCACGAATCTTGGACAGCCGGTCATAATGACAGAAGGTGA
C
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Coding sequence (CDS) from alignment at H-paniculata_contig18998:1319..4769+

>mRNA_H-paniculata_contig18998.4752.1 ID=mRNA_H-paniculata_contig18998.4752.1|Name=mRNA_H-paniculata_contig18998.4752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig18998:1319..4769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGGTCACAAAACCTGCGTGATCGACTTCGATATCGGACTGAGGAA
TATGGATTTACATCTAGGCTGCGAGCGCCGCGTCATATTTGACTTCGTCA
ATGTTATACAGCAGGCGGGTCACAAAACCTGCGTGATCGACTTCGATATC
GGACTGAGGAATATGGATTTACATCTAGGCTGCGAGCGCCGCGTCATATT
TGACTTCGTCAATGTTATACAGGAGCAGTGTTCGCTGAATCAGGCCTTAA
TTCAGGATCGCCGAACGCCGATGCTTAGCCTCTTAGCGGCTTCGCAGACC
AAAGACAAGGAGGCGTTGACACAAAGCGGGGTCACCCGGGTGATTCGCCA
GCTGCAGAAGACCTTCGCCTACGTGGTGTGTGACAGCCCCGCTGGAATCG
AGTCGGGCAAGAGCAGTGTTCGCTGAATCAGGCCTTAATTCAGGATCGCC
GAACGCCGATGCTTAGCCTCTTAGCGGCTTCGCAGACCAAAGACAAGGAG
GCGTTGACACAAAGCGGGGTCACCCGGGTGATTCGCCAGCTGCAGAAGAC
CTTCGCCTACGTGGTGTGTGACAGCCCCGCTGGAATCGAGTCGGGCAAAG
ATGCATTTTACCAGATGCATTTTACCGTGCACGGCATGCCATGTATCTGG
CGGACGAGGCGGTGATCGTAACCAACCCGGAAGTGTCTTCGTGCCGAGAC
AGCGACAAGATGGTCGGATTTATTTCGAGCAAGTCTCGACGCGCGGAGAC
AGGGGAAGCTCCAGTGCGACAGACACTCCTCGTCACAAGATACGGTGCAC
GGCATGCCATGTATCTGGCGGACGAGGCGGTGATCGTAACCAACCCGGAA
GTGTCTTCGTGCCGAGACAGCGACAAGATGGTCGGATTTATTTCGAGCAA
GTCTCGACGCGCGGAGACAGGGGAAGCTCCAGTGCGACAGACACTCCTCG
TCACAAGATACGACCCTGTTAGGGCTGAGAACAACGACATGCTGACGCTG
ACGGATATCCAAGAGCTGCTGGGACTGGAAGTGCTTGGGCTAATTCCAGA
GTCCAAGGCTGTGCTGACGGCCACGAATCTTGGACAGCCGGTCATAATGA
CAGAAGGTGACACCCTGTTAGGGCTGAGAACAACGACATGCTGACGCTGA
CGGATATCCAAGAGCTGCTGGGACTGGAAGTGCTTGGGCTAATTCCAGAG
TCCAAGGCTGTGCTGACGGCCACGAATCTTGGACAGCCGGTCATAATGAC
AGAAGGTGAC
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