mRNA_H-paniculata_contig18995.4751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18995.4751.1
Unique NamemRNA_H-paniculata_contig18995.4751.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: D8LLN6_ECTSI (Oxidoreductase, short chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN6_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 4.870e-71
Identity = 104/131 (79.39%), Postives = 120/131 (91.60%), Query Frame = 1
Query:    1 ILTPDTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQIYADKYDELGAIGPEEAAPGIVK 393
            IL PDTFE+P++ A  KMYEVCVLGPLR +Q L +SGLLR+GS +GM+TSEGGSVGLRTE+EGGNNYGHHMSKCAQNM+GKL ALD+K +G+AI N+HPGFMKT+MT+IYADKYDELGAIGPEEAAPGIVK
Sbjct:  167 ILIPDTFEDPEFDAAVKMYEVCVLGPLRVLQALVVSGLLRKGSNIGMITSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKTRGVAIVNIHPGFMKTSMTEIYADKYDELGAIGPEEAAPGIVK 297          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A1X6NYS2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYS2_PORUM)

HSP 1 Score: 150 bits (378), Expect = 1.580e-42
Identity = 72/134 (53.73%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    1 ILTPDTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQIYADKYDELGAIGPEEAAPGIVKVPK 402
            IL PD+  +       +M +VC LGPLR +  L  +GLL  GSKVG+VTSEGGS+GLRT  EGG NYGHH SK A+NM GK+L+LD+  +G+ +  +HPGFMK++MT+ + +KYDELGA+ P  AA G+V+  K
Sbjct:   92 ILKPDSLGDLQPDNWRQMMDVCALGPLRIVDALVTAGLLTAGSKVGLVTSEGGSIGLRTPKEGGGNYGHHCSKAAENMAGKILSLDLAERGMPLVCIHPGFMKSSMTEPFKEKYDELGAVEPHVAAKGVVECMK 225          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A6A6BKH6_9PEZI (Uncharacterized protein n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BKH6_9PEZI)

HSP 1 Score: 135 bits (340), Expect = 7.480e-37
Identity = 67/129 (51.94%), Postives = 97/129 (75.19%), Query Frame = 1
Query:   13 DTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQ-IYADKY-DELGAIGPEEAAPGIVK 393
            ++F+ PD++A  KMY+   +GP+  +Q L  +GLL++GSKV +V+SE GS+GLR E EGG NYGHH SK A NM+GKLL+LD+K +G+A+  +HPGFM+T MT+ +  DK+ D+ GA+ PE AA  +V+
Sbjct:   91 ESFDAPDFQAQLKMYQTSAIGPVFLVQQLFKAGLLKQGSKVVLVSSESGSIGLRHESEGGGNYGHHASKAALNMVGKLLSLDLKDEGVAVAIVHPGFMRTEMTKSVGFDKFWDKGGAVVPEAAAKSLVE 219          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A1Q5T430_9EURO (Uncharacterized protein n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5T430_9EURO)

HSP 1 Score: 134 bits (337), Expect = 1.030e-36
Identity = 68/128 (53.12%), Postives = 93/128 (72.66%), Query Frame = 1
Query:   13 DTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQ-IYADKY-DELGAIGPEEAAPGIV 390
            +TF+NPD++   KMY +  + P+  +  L  +G L +GSKV +V+SE GS+ LR E EGG NYGHH SK A NM+GKLL+LD+KPKGIA+  +HPGFM+T MT+ +  DKY D+ GA+ P+EAA  +V
Sbjct:   86 ETFDNPDWEKEAKMYTISAISPVFIVHHLVKAGFLDKGSKVIIVSSESGSITLRHEKEGGGNYGHHASKAASNMVGKLLSLDLKPKGIAVGLVHPGFMRTEMTKGVGFDKYWDDGGAVTPDEAAQSLV 213          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A2J5I761_9EURO (Oxidoreductase n=3 Tax=Aspergillus TaxID=5052 RepID=A0A2J5I761_9EURO)

HSP 1 Score: 132 bits (332), Expect = 9.960e-36
Identity = 68/123 (55.28%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   13 DTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQ-IYADKY-DELGAIGPEEA 375
            +TF+NPD++   KMY    +GP+  +Q L  +GLL +GSKV +V+SE GS+ LR E EGG NYGHH SK A NM+GKLL+LD+K KGIA+  +HPGFM+T MT+ +  DKY D  GA+ P+EA
Sbjct:   86 ETFDNPDWEKQVKMYTTSAIGPVFVVQNLVKAGLLDKGSKVILVSSESGSITLRHEKEGGGNYGHHASKSALNMVGKLLSLDLKDKGIAVGLVHPGFMRTEMTKSVGFDKYWDAGGAVTPDEA 208          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A507QYT0_MONPU (Uncharacterized protein n=1 Tax=Monascus purpureus TaxID=5098 RepID=A0A507QYT0_MONPU)

HSP 1 Score: 132 bits (332), Expect = 1.240e-35
Identity = 68/128 (53.12%), Postives = 92/128 (71.88%), Query Frame = 1
Query:   13 DTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQ-IYADKYDELG-AIGPEEAAPGIV 390
            +TF++PD+    KMY    +GP+  + +L  +GLL EGSKV +V+SE GS+ LR E EGG NYGHH SK A NM+GKLL+LD+K KGIA+  +HPGFM+T MT+ +  DKY E G A+ P+EAA  ++
Sbjct:   89 ETFDSPDWDKEVKMYTTSAIGPVFVVHSLVKAGLLHEGSKVILVSSESGSITLRHEKEGGGNYGHHASKAALNMVGKLLSLDLKEKGIAVGLVHPGFMRTEMTKGVGFDKYWESGGAVTPDEAAKSLI 216          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A8E0QQJ0_9EURO (Uncharacterized protein n=2 Tax=Aspergillus udagawae TaxID=91492 RepID=A0A8E0QQJ0_9EURO)

HSP 1 Score: 132 bits (332), Expect = 1.700e-35
Identity = 68/124 (54.84%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   13 DTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQ-IYADKY-DELGAIGPEEAA 378
            +TF++PD++   KMY    +GP+  +Q L  +GLL +GSKV +V+SE GS+ LR E EGG NYGHH SK A NM+GKLL+LD+K KGIA+  +HPGFM+T MT+ +  DKY D  GA+ P+EAA
Sbjct:  108 ETFDDPDWEKEVKMYTTSAIGPVFVVQRLVKAGLLDKGSKVILVSSESGSIALRHEKEGGGNYGHHASKAALNMVGKLLSLDLKEKGIAVGLVHPGFMRTEMTKSVGFDKYWDAGGAVTPDEAA 231          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A8H3UY49_VENIN (Uncharacterized protein n=1 Tax=Venturia inaequalis TaxID=5025 RepID=A0A8H3UY49_VENIN)

HSP 1 Score: 130 bits (328), Expect = 2.270e-35
Identity = 63/129 (48.84%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   13 DTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMTQ-IYADKY-DELGAIGPEEAAPGIVK 393
            ++F++P+++    MY++  +GP+  +  L  +GLLREGSK+ +++SE GS+ LR E EGG NYGHH SK A+NM+GKLL+LD+K KG+A+  +HPGFM+T MT  +  DKY D+ GA+ P+EAA  +++
Sbjct:   85 ESFDDPNWEKQLLMYKISAMGPVFLVHHLEKAGLLREGSKIILISSESGSITLRHESEGGGNYGHHASKAAENMVGKLLSLDLKEKGVAVGIVHPGFMRTEMTAGVGFDKYWDDGGAVTPDEAAESLIE 213          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A2X0M0J9_9BASI (BQ5605_C018g08648 protein n=3 Tax=Microbotryum TaxID=34416 RepID=A0A2X0M0J9_9BASI)

HSP 1 Score: 132 bits (332), Expect = 2.840e-35
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   13 DTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMT-QIYADK-YDELGAIGPEEAAPGIVK 393
            DT +  D++   KM+++C + P   +  L   G +R+G KV +VT+EGGS+ LRT  EGG NYGHH SK A NM+GKLL++D+  +GI + N+HPGFMKT MT  I  DK YDE GA+ PEEAA  +++
Sbjct:  129 DTLQTLDWEEMNKMFQICAIAPAFIVGELVKQGSIRQGGKVVLVTTEGGSIRLRTREEGGGNYGHHASKAAANMVGKLLSIDLAKQGITLVNIHPGFMKTEMTANIGYDKFYDEGGAVEPEEAAKSLIE 257          
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Match: A0A238FKL3_9BASI (BQ2448_6125 protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FKL3_9BASI)

HSP 1 Score: 130 bits (328), Expect = 3.960e-35
Identity = 65/131 (49.62%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    7 TPDTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTSEGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPGFMKTTMT-QIYADKY-DELGAIGPEEAAPGIVK 393
            T DT E  D+   TKM ++C + P+  +  L     +R+G K+ +VT+EGGS+GLRT+ EGG NYGHH SK A NM+GKLL++D+  +GI + N+HP FM+T MT  I  DKY D+ GA+ PEEAA  +V+
Sbjct:   83 TDDTLETLDWDEMTKMVQICAIAPVFVVGELMQQASIRKGGKIMLVTTEGGSIGLRTKEEGGGNYGHHASKAAANMVGKLLSIDLAKQGITLVNIHPEFMRTEMTANIGYDKYWDKGGAVEPEEAAKSLVE 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18995.4751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN6_ECTSI4.870e-7179.39Oxidoreductase, short chain dehydrogenase n=2 Tax=... [more]
A0A1X6NYS2_PORUM1.580e-4253.73Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6A6BKH6_9PEZI7.480e-3751.94Uncharacterized protein n=1 Tax=Aplosporella pruni... [more]
A0A1Q5T430_9EURO1.030e-3653.13Uncharacterized protein n=1 Tax=Penicillium subrub... [more]
A0A2J5I761_9EURO9.960e-3655.28Oxidoreductase n=3 Tax=Aspergillus TaxID=5052 RepI... [more]
A0A507QYT0_MONPU1.240e-3553.13Uncharacterized protein n=1 Tax=Monascus purpureus... [more]
A0A8E0QQJ0_9EURO1.700e-3554.84Uncharacterized protein n=2 Tax=Aspergillus udagaw... [more]
A0A8H3UY49_VENIN2.270e-3548.84Uncharacterized protein n=1 Tax=Venturia inaequali... [more]
A0A2X0M0J9_9BASI2.840e-3550.39BQ5605_C018g08648 protein n=3 Tax=Microbotryum Tax... [more]
A0A238FKL3_9BASI3.960e-3549.62BQ2448_6125 protein n=1 Tax=Microbotryum intermedi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18995contigH-paniculata_contig18995:2655..3364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.5
Seed ortholog evalue7.5e-57
Seed eggNOG ortholog2880.D8LLN6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular detoxification of aldehyde
EggNOG OGsCOG1028@1,KOG1611@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.314859-CDS-H-paniculata_contig18995:2654..28531622929456.314859-CDS-H-paniculata_contig18995:2654..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18995 2655..2853 -
1691480869.2396297-CDS-H-paniculata_contig18995:2654..28531691480869.2396297-CDS-H-paniculata_contig18995:2654..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18995 2655..2853 -
1622929456.3256512-CDS-H-paniculata_contig18995:3161..33641622929456.3256512-CDS-H-paniculata_contig18995:3161..3364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18995 3162..3364 -
1691480869.2495737-CDS-H-paniculata_contig18995:3161..33641691480869.2495737-CDS-H-paniculata_contig18995:3161..3364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18995 3162..3364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18995.4751.1prot_H-paniculata_contig18995.4751.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18995 2655..3364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18995.4751.1

>prot_H-paniculata_contig18995.4751.1 ID=prot_H-paniculata_contig18995.4751.1|Name=mRNA_H-paniculata_contig18995.4751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
ILTPDTFENPDYKACTKMYEVCVLGPLRAIQTLTMSGLLREGSKVGMVTS
EGGSVGLRTELEGGNNYGHHMSKCAQNMLGKLLALDMKPKGIAICNLHPG
FMKTTMTQIYADKYDELGAIGPEEAAPGIVKVPK
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mRNA from alignment at H-paniculata_contig18995:2655..3364-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18995.4751.1 ID=mRNA_H-paniculata_contig18995.4751.1|Name=mRNA_H-paniculata_contig18995.4751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at H-paniculata_contig18995:2655..3364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATTGACGCCTGACACGTTCGAGAACCCCGACTACAAGGCCTGTACCAA GATGTACGAGGTCTGTGTCCTGGGCCCCCTTCGAGCCATCCAGACTCTAA CGATGTCCGGCTTGCTGCGCGAAGGGTCGAAGGTCGGGATGGTAACCTCG GAGGGTGGCTCGGTGGGACTGAGGACAGAATTAGAGGGAGGCAACAACTA CGGGTGAGCCCTCAAAACCGTACTTGAGAATGGCCGCACACGTACCGTAT ATTTCAGTTCTTTACATGTTCCATATGCTACAGAATAGTTAGTGCACAAT GTCATGCTATGGTTCTGTAAGCCTGCCTCAAGATTGTTCGTCCTCCCTCC TCCCTGCTCTTCCAGCCCTTCCCCCCAATTGAACTCAACCGAATCCAACC CAACCCAACCCAACTCAACCATACCGAACCGACACGAACCGAACCGAACC GAACCGAACCGAAATATACCCTATGGTGACGTTGTTTTGTGACATCATGC CCCGAGAAAAGGCACCACATGAGCAAGTGTGCCCAGAACATGCTGGGAAA GCTCTTGGCGCTGGACATGAAGCCAAAAGGAATCGCGATCTGCAACTTGC ATCCCGGTTTCATGAAGACAACAATGACACAGATCTACGCCGACAAGTAC GATGAGCTGGGCGCCATCGGACCGGAGGAGGCTGCTCCCGGCATCGTAAA GGTACCAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18995:2655..3364-

>mRNA_H-paniculata_contig18995.4751.1 ID=mRNA_H-paniculata_contig18995.4751.1|Name=mRNA_H-paniculata_contig18995.4751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig18995:2655..3364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATTGACGCCTGACACGTTCGAGAACCCCGACTACAAGGCCTGTACCAA
GATGTACGAGGTCTGTGTCCTGGGCCCCCTTCGAGCCATCCAGACTCTAA
CGATGTCCGGCTTGCTGCGCGAAGGGTCGAAGGTCGGGATGGTAACCTCG
GAGGGTGGCTCGGTGGGACTGAGGACAGAATTAGAGGGAGGCAACAACTA
CGGATATTGACGCCTGACACGTTCGAGAACCCCGACTACAAGGCCTGTAC
CAAGATGTACGAGGTCTGTGTCCTGGGCCCCCTTCGAGCCATCCAGACTC
TAACGATGTCCGGCTTGCTGCGCGAAGGGTCGAAGGTCGGGATGGTAACC
TCGGAGGGTGGCTCGGTGGGACTGAGGACAGAATTAGAGGGAGGCAACAA
CTACGGGCACCACATGAGCAAGTGTGCCCAGAACATGCTGGGAAAGCTCT
TGGCGCTGGACATGAAGCCAAAAGGAATCGCGATCTGCAACTTGCATCCC
GGTTTCATGAAGACAACAATGACACAGATCTACGCCGACAAGTACGATGA
GCTGGGCGCCATCGGACCGGAGGAGGCTGCTCCCGGCATCGTAAAGGTAC
CAAAAGCACCACATGAGCAAGTGTGCCCAGAACATGCTGGGAAAGCTCTT
GGCGCTGGACATGAAGCCAAAAGGAATCGCGATCTGCAACTTGCATCCCG
GTTTCATGAAGACAACAATGACACAGATCTACGCCGACAAGTACGATGAG
CTGGGCGCCATCGGACCGGAGGAGGCTGCTCCCGGCATCGTAAAGGTACC
AAAA
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