mRNA_H-paniculata_contig18988.4746.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18988.4746.1
Unique NamemRNA_H-paniculata_contig18988.4746.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18988.4746.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.620e-12
Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:    1 YHIWDTVNTNLKDVEA----YAPTVP----------GVYTWPLPGAEGYYSKLLSGPLPPLQCTDYAPAGTKYEG 183
            YHIWD++NT   D +     YAP +P            +TWPL GAEGYYS + SGP PPL+C +  PAG  Y G
Sbjct:  118 YHIWDSLNTPFFDEDNPPSDYAP-IPTKFNDGIDEGDTFTWPLEGAEGYYSVMYSGPFPPLECPNLYPAGVAYVG 191
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BLAST of mRNA_H-paniculata_contig18988.4746.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.000e-10
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    1 YHIWDTVNTNLKDVEA----YAPTVPGVY----------TWPLPGAEGYYSKLLSGPLPPLQCTDYAPAGTKYEG 183
            YHIWD++NT   D +     YAP +P  Y          TWPL GAEGYYS + SGP PPL+C +  P    Y G
Sbjct:  148 YHIWDSLNTPFFDEDDPPSDYAP-IPTKYNDGIEEGDTFTWPLEGAEGYYSVMYSGPFPPLECPNLFPEDVAYVG 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18988.4746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ76_9PHAE9.620e-1246.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV1_ECTSI3.000e-1045.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18988contigH-paniculata_contig18988:4651..4836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929455.7808855-CDS-H-paniculata_contig18988:4650..48361622929455.7808855-CDS-H-paniculata_contig18988:4650..4836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18988 4651..4836 +
1691480869.0258262-CDS-H-paniculata_contig18988:4650..48361691480869.0258262-CDS-H-paniculata_contig18988:4650..4836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18988 4651..4836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18988.4746.1prot_H-paniculata_contig18988.4746.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18988 4651..4836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18988.4746.1

>prot_H-paniculata_contig18988.4746.1 ID=prot_H-paniculata_contig18988.4746.1|Name=mRNA_H-paniculata_contig18988.4746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
YHIWDTVNTNLKDVEAYAPTVPGVYTWPLPGAEGYYSKLLSGPLPPLQCT
DYAPAGTKYEG*
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mRNA from alignment at H-paniculata_contig18988:4651..4836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18988.4746.1 ID=mRNA_H-paniculata_contig18988.4746.1|Name=mRNA_H-paniculata_contig18988.4746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig18988:4651..4836+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCACATCTGGGACACAGTAAACACGAACCTAAAAGATGTGGAGGCATA
CGCGCCCACTGTCCCCGGAGTTTACACGTGGCCCCTTCCTGGCGCTGAGG
GATACTACAGCAAGCTTTTGTCTGGCCCGTTGCCTCCTCTTCAGTGCACC
GACTACGCGCCGGCCGGCACCAAATATGAGGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18988:4651..4836+

>mRNA_H-paniculata_contig18988.4746.1 ID=mRNA_H-paniculata_contig18988.4746.1|Name=mRNA_H-paniculata_contig18988.4746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig18988:4651..4836+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCACATCTGGGACACAGTAAACACGAACCTAAAAGATGTGGAGGCATA
CGCGCCCACTGTCCCCGGAGTTTACACGTGGCCCCTTCCTGGCGCTGAGG
GATACTACAGCAAGCTTTTGTCTGGCCCGTTGCCTCCTCTTCAGTGCACC
GACTACGCGCCGGCCGGCACCAAATATGAGGGGTAGTACCACATCTGGGA
CACAGTAAACACGAACCTAAAAGATGTGGAGGCATACGCGCCCACTGTCC
CCGGAGTTTACACGTGGCCCCTTCCTGGCGCTGAGGGATACTACAGCAAG
CTTTTGTCTGGCCCGTTGCCTCCTCTTCAGTGCACCGACTACGCGCCGGC
CGGCACCAAATATGAGGGGTAG
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