mRNA_H-paniculata_contig18894.4713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18894.4713.1
Unique NamemRNA_H-paniculata_contig18894.4713.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: A0A6H5L5R7_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5R7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 9.940e-31
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 DRKFVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 204
            ++KFVGAYSPEARR+RIERF EKRE RVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA
Sbjct:  611 EKKFVGAYSPEARRQRIERFLEKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 678
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: D8LRP7_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.670e-30
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 DRKFVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 204
            ++KFVGAYSPEARR+RIERF +KRE RVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA
Sbjct:  648 EKKFVGAYSPEARRQRIERFLDKREKRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 715
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: A0A836CR31_9STRA (CCT motif-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR31_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.960e-29
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   10 FVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 198
             VGAYSPE+RR+R++RF EKR HR+WTK VKYDVRKNFADTRMRVKGRFVKK+DEALLREVMA
Sbjct:    1 MVGAYSPESRRRRVQRFMEKRHHRIWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVMA 63
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: A0A835ZB50_9STRA (CCT motif-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB50_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.780e-29
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   10 FVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVM 195
             VGAYSPE+RR+R+ERF EKR+HRVWTK VKYDVRKNFADTRMRVKGRFVKK+DEALLREVM
Sbjct:    2 LVGAYSPESRRRRLERFLEKRKHRVWTKTVKYDVRKNFADTRMRVKGRFVKKDDEALLREVM 63
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: A0A7S2WW68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW68_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.140e-26
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   10 FVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 198
            F+GAYSPEARRKRI+RF EKR+ RVWTK VKYDVRKNFAD+RMRVKGRFVKKEDE LLRE+M+
Sbjct:  197 FIGAYSPEARRKRIQRFLEKRKKRVWTKKVKYDVRKNFADSRMRVKGRFVKKEDEELLRELMS 259
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: A0A7S1D0Z6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0Z6_CYCTE)

HSP 1 Score: 100 bits (250), Expect = 7.260e-25
Identity = 50/63 (79.37%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:   10 FVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 198
            +VGAYSPE+R+ RIERF EKR HRVWTK VKYDVRKNFAD+R+RVKGRFVKKEDE L+RE+M+
Sbjct:  160 WVGAYSPESRKLRIERFMEKRNHRVWTKSVKYDVRKNFADSRLRVKGRFVKKEDELLMRELMS 222
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: M4BHF3_HYAAE (CCT domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BHF3_HYAAE)

HSP 1 Score: 97.4 bits (241), Expect = 7.380e-25
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 DRKFVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 198
            D K+VG+YSPEARRKRIERF EKR+HRVW K V YDVRKNFA++R+RVKGRFVKKEDE LL ++++
Sbjct:   18 DGKYVGSYSPEARRKRIERFLEKRKHRVWAKKVDYDVRKNFANSRLRVKGRFVKKEDEELLCQLLS 83
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: A0A7S2WWC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWC9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.990e-25
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   10 FVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMA 198
            F+GAYSPEARRKRI+RF EKR+ RVWTK VKYDVRKNFAD+RMRVKGRFVKKEDE LLRE+M+
Sbjct:  410 FIGAYSPEARRKRIQRFLEKRKKRVWTKKVKYDVRKNFADSRMRVKGRFVKKEDEELLRELMS 472
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BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: D8LYG5_BLAHO (CCT domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LYG5_BLAHO)

HSP 1 Score: 101 bits (252), Expect = 8.760e-25
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    4 RKFVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVM 195
            +K++G YSPEAR+KR++RF EKR+ RVWTK VKYDVRKNFAD+R+RVKGRFVKKEDE LLRE+M
Sbjct:  200 KKYIGMYSPEARKKRVQRFFEKRKQRVWTKKVKYDVRKNFADSRLRVKGRFVKKEDEELLRELM 263
[Close]
BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Match: A0A196SBV6_BLAHN (CCT motif containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SBV6_BLAHN)

HSP 1 Score: 100 bits (250), Expect = 9.640e-25
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    4 RKFVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKGRFVKKEDEALLREVMACA 204
            +K++G YSPE+R+KR++RF EKR+ RVWTK VKYDVRKNFAD+R+RVKGRFVKKEDE LLRE+M  A
Sbjct:  171 KKYIGIYSPESRKKRVQRFFEKRKQRVWTKKVKYDVRKNFADSRLRVKGRFVKKEDEELLRELMNLA 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18894.4713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5R7_9PHAE9.940e-3192.65CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRP7_ECTSI2.670e-3091.18CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CR31_9STRA1.960e-2984.13CCT motif-domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZB50_9STRA2.780e-2987.10CCT motif-domain-containing protein (Fragment) n=1... [more]
A0A7S2WW68_9STRA5.140e-2684.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1D0Z6_CYCTE7.260e-2579.37Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
M4BHF3_HYAAE7.380e-2574.24CCT domain-containing protein n=2 Tax=Peronosporac... [more]
A0A7S2WWC9_9STRA7.990e-2584.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LYG5_BLAHO8.760e-2576.56CCT domain-containing protein n=1 Tax=Blastocystis... [more]
A0A196SBV6_BLAHN9.640e-2573.13CCT motif containing protein n=1 Tax=Blastocystis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18894contigH-paniculata_contig18894:3271..4032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue6e-26
Seed eggNOG ortholog2880.D8LRP7
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009791,GO:0009889,GO:0009908,GO:0009909,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0023052,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048367,GO:0048580,GO:0048608,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051252,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0090567,GO:0104004,GO:0140110,GO:1903506,GO:2000026,GO:2000112,GO:2000241,GO:2001141
EggNOG free text desc.CCT motif
EggNOG OGs2CXHC@1,2RXHA@2759
Ec32 ortholog descriptionCCT domain domain protein
Ec32 orthologEc-12_000590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929451.8132997-CDS-H-paniculata_contig18894:3270..33511622929451.8132997-CDS-H-paniculata_contig18894:3270..3351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18894 3271..3351 +
1691480867.240406-CDS-H-paniculata_contig18894:3270..33511691480867.240406-CDS-H-paniculata_contig18894:3270..3351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18894 3271..3351 +
1622929451.824973-CDS-H-paniculata_contig18894:3906..40321622929451.824973-CDS-H-paniculata_contig18894:3906..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18894 3907..4032 +
1691480867.2502644-CDS-H-paniculata_contig18894:3906..40321691480867.2502644-CDS-H-paniculata_contig18894:3906..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18894 3907..4032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18894.4713.1prot_H-paniculata_contig18894.4713.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18894 3271..4032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18894.4713.1

>prot_H-paniculata_contig18894.4713.1 ID=prot_H-paniculata_contig18894.4713.1|Name=mRNA_H-paniculata_contig18894.4713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
DRKFVGAYSPEARRKRIERFHEKREHRVWTKMVKYDVRKNFADTRMRVKG
RFVKKEDEALLREVMACA*
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mRNA from alignment at H-paniculata_contig18894:3271..4032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18894.4713.1 ID=mRNA_H-paniculata_contig18894.4713.1|Name=mRNA_H-paniculata_contig18894.4713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at H-paniculata_contig18894:3271..4032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCGGAAGTTTGTCGGAGCGTACTCGCCGGAGGCTCGGCGAAAACGGAT
AGAACGCTTCCATGAGAAGCGCGAGCATAGGGTAAGTAGACATGCCTCAA
TTTGTGGTGTTGCTGGTGGTGCTTTGTAGACGGTATACTTGACAAATACT
CGGTAGTCCATGAATGCCGCTTTTTTACACTTCGTTTTGAAATTCAAGTT
GGTTGATTAGTGAACAGTTGTTGTAATTTGTTGTTTTTGTATGGAAGATG
TTTAGCGGACAAGTCTGTTCCTTTTCGCTTGATACTTTGTTCTGTTCGAT
CTTGCTCCCGGCCAGCATTTTGGCGGTCTGTACAAGCTTTCAAACTCGGA
TATTCTTTTCGAATCATTGATGACCAAGAGAAGGTGCCTACTAGTGCTGC
TCAAGTTTTAGTCTACATGGTACGGTCGTCGGTGTTCTACGTACAAAATA
CAACGGTGGATTTGTATATCTTGTGCACATCTGCATCGAGGTCAATTTAG
CGATGAACTCTGAAGCTACAGACGTCCTCGCCTGTCTCTTAACCCGCCTT
CTCCTAGAAGGCTCGTTTTTTCTTTTTTTTGCATACTCATGTATCGACAT
CCGGCCCTTGTCTTTTTTTTTAACATGATTTGGTAGGTCTGGACAAAGAT
GGTAAAGTACGACGTACGCAAGAACTTTGCCGATACCCGCATGCGGGTCA
AAGGTCGGTTCGTGAAGAAGGAGGACGAAGCACTTCTGCGCGAAGTTATG
GCCTGCGCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18894:3271..4032+

>mRNA_H-paniculata_contig18894.4713.1 ID=mRNA_H-paniculata_contig18894.4713.1|Name=mRNA_H-paniculata_contig18894.4713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig18894:3271..4032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCGGAAGTTTGTCGGAGCGTACTCGCCGGAGGCTCGGCGAAAACGGAT
AGAACGCTTCCATGAGAAGCGCGAGCATAGGGATCGGAAGTTTGTCGGAG
CGTACTCGCCGGAGGCTCGGCGAAAACGGATAGAACGCTTCCATGAGAAG
CGCGAGCATAGGGTCTGGACAAAGATGGTAAAGTACGACGTACGCAAGAA
CTTTGCCGATACCCGCATGCGGGTCAAAGGTCGGTTCGTGAAGAAGGAGG
ACGAAGCACTTCTGCGCGAAGTTATGGCCTGCGCATAGGTCTGGACAAAG
ATGGTAAAGTACGACGTACGCAAGAACTTTGCCGATACCCGCATGCGGGT
CAAAGGTCGGTTCGTGAAGAAGGAGGACGAAGCACTTCTGCGCGAAGTTA
TGGCCTGCGCATAG
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