mRNA_H-paniculata_contig1884.4699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 289 bits (739), Expect = 3.510e-89 Identity = 142/264 (53.79%), Postives = 184/264 (69.70%), Query Frame = 2
Query: 251 SSFAVTAGFVGMLA-AGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGD-QGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDD 1036
+S AG +G T AL+V P++ +VV+ Y + W+G S D RFEIDL YCGSYSYCF+ E +CGF + N+C GD GC S AD + + PEPL G S+ GYR+R+A+VG S+ RCS+DFYL+SS D P G GGP++ VV+PTAD++A+AG YT+EFDYDNGFG +GRFKID+Y + + GDCG W++SVCDKPD+GC DS GDY+VV+P + G YKIRVGLFGDD +YACS +FE+V D
Sbjct: 6 ASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFE-EAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVG--SDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLY--KALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 283 bits (723), Expect = 5.560e-87 Identity = 134/250 (53.60%), Postives = 172/250 (68.80%), Query Frame = 2
Query: 269 AGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEI 1018
AG +G T AL+V P++ SV + Y + W G D RFE+DL YCGSYS+CF + DCGF + N+C D C D + + PEP+ G S+NGYRVR+++VG ++ RCSEDFYLV+S DV G GGP+M VV+P A+++AVAG YT+EFDYDNGFG +GRFKID+Y GDCG W++SVCDKPD+GC+DS GDYDVV+P + G YKIRVGLFGDD++YACS +FEI
Sbjct: 12 AGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEG-----NGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEI 254
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 278 bits (711), Expect = 1.890e-85 Identity = 133/261 (50.96%), Postives = 181/261 (69.35%), Query Frame = 2
Query: 239 KMTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIV 1021
K + + A G +G + T AL+V P++ +VV++ Y + W G S D RFEIDL YCGSYS+CF++ +CGF V NLC GD C + D + +PEP+DG S++GYRVR+ +VG +E RCS++FYL+SS D + GP+M VV+P++ ++AVAG YT+EFDYDNGFG+ GRFKID+Y GDCG W+SSVCDKPD+GC D+ GDYD+V+P+ + G YKIRVGLFGDD+V+ACS +FE+V
Sbjct: 2 KSSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGT-----GDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVV 252
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 244 bits (622), Expect = 3.340e-72 Identity = 133/266 (50.00%), Postives = 172/266 (64.66%), Query Frame = 2
Query: 242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMY-AQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDD 1036
MTR+ F A GML A ALKV+ PS G++V+A+ Y +EW+G S D RFEIDL YCGS C +D DCG V LC G+ GC D +G Y+ +MPEP+ G S +GY+VR+ + + E CS++FYL++S + P G+ GP++ V SP + +A EYT+EFDYDNG GS+V RF ID+Y A E GDCG ++ S+CDKP IGCKDS GDYDV +P T G YKIRV F DD++Y+CS F I E GDD
Sbjct: 1 MTRTGFVALA--CGMLGAAN-ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMED--DCGDWVTALCPYGEDGC-PDNEGDYDIVMPEPMLGTSGSGYKVRVWDI-HDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGE------GDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEE-GDD 250
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 236 bits (603), Expect = 1.520e-69 Identity = 125/265 (47.17%), Postives = 167/265 (63.02%), Query Frame = 2
Query: 242 MTRSSF-AVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGD 1033
M R+ F A+ G +G+ +A L+V P+ G VV++ Y +EWSG + RFEIDL YC S C +DE CG V LC G+ GC D +G Y+ +MPEP+ G S +GY+VR+A V + CS++FYL++ D P + GGP + V SP+ A AG EYT+EFDYDNG GS+VGRF ID+YA + GDCG ++ ++CDKP IGCKDS GDYDV +P+ G Y IRVG F D++VY CS+ FEI+ D
Sbjct: 2 MVRTGFVALACGMLGVASA----LEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSM--CMEDE--CGEWVTALCPYGEDGC-PDNEGDYDIVMPEPMSGTSGSGYKVRVADVD-DEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATG-----SGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADD 251
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 234 bits (598), Expect = 1.410e-68 Identity = 119/243 (48.97%), Postives = 159/243 (65.43%), Query Frame = 2
Query: 305 ALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGD 1033
AL+V P+ G VVA+ Y +EW+G + R+EIDL YCGS C +DE CG V LC G+ GC D +G Y+ +MPEP+ G S +GY+VR+A V + CS++FYL++ + P G+ GGP + V SP++ A AG EYT+EFDYDNG GS+VGRF ID+Y+ + GDCG ++ ++CDKP IGCKDS GDYDV +P+ G Y IRVG F DD+VY CS+ FEI+ D
Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSM--CMEDE--CGDWVTALCPYGEDGC-PDNEGDYDIVMPEPMSGTSGSGYKVRVADVD-DDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATG-----SGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 228 bits (581), Expect = 2.060e-66 Identity = 128/260 (49.23%), Postives = 166/260 (63.85%), Query Frame = 2
Query: 242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIV 1021
M R++FA A GML A AL+V P+ G VVA+S Y +EW+G + R++IDL YCGS C +DE CG V LC GD GC D G Y+ +MPEP+DG SS GY+V + S+ CS DF L++S + P + G ++V SP+ A+AG EYT+EFDYDNG GS+V RF ID+Y+ GDCG +++++CDKP IGCKDS GDYDVV+P T G Y IRVG+F DD VY CS++FEIV
Sbjct: 1 MARTAFAALA--FGMLGAAN-ALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSV--CMEDE--CGDWVTALCPYGDDGC-PDTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGG-----SGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 224 bits (571), Expect = 6.710e-65 Identity = 126/265 (47.55%), Postives = 163/265 (61.51%), Query Frame = 2
Query: 242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDD 1036
M R+ F A ML A AL+V PS + VVA+ Y +EW+G +D RFEIDL +CGS C +D CG V LC G++GC D +G Y+ +MPEP+ G S++GY+VR+ V + + CS+ FYL++S+D P G+ G + V SP A AG EYT+EFDYDNG GS V RF ID+Y GDCG +++S+CDKP IGCKDS GDYDV +P T G YKIRVG F D+ +Y CS F I+ GDD
Sbjct: 1 MARTGFVALA--CAMLGAAN-ALEVVTPSADLIVVADRTYTVEWTG-ADSGRFEIDLYHCGSM--CMEDS--CGDWVTALCPYGEEGC-PDNEGDYDIVMPEPMSGESNSGYKVRVMDVS-DEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGD-----GDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG-GDD 249
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 221 bits (564), Expect = 6.580e-64 Identity = 126/266 (47.37%), Postives = 165/266 (62.03%), Query Frame = 2
Query: 242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDDL 1039
M R++FA A GML A AL+V P+ G+SV+A+ Y +EW+G SD +RFEIDL YCGS+ C +DE CG V LC G GC D G Y+ +MPEP+ G SS GY+V + S + CS DF LV+S D P G G S+ V SP+ A+AG YT+E+DY+NG GS+ RF ID+Y+ GDCG +++++CDKP IGC DS GDYDV +P T G Y +RVG+F DD ++ CSE FEIV D+
Sbjct: 1 MARTAFAALA--FGMLGAAN-ALEVVSPAAGISVIADRTYTVEWTGTSD-SRFEIDLYYCGSF--CMEDE--CGDWVTALCPYGADGC-PDTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDESS-MGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGT----GDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDM 250
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 213 bits (541), Expect = 1.440e-60 Identity = 121/266 (45.49%), Postives = 166/266 (62.41%), Query Frame = 2
Query: 242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDDL 1039
M R++FA A GML+A AL+V P G+SV+A+ Y +EW+G + RFEIDL YC S+ C DD CG V LC G GC D+ G Y+ +MPEP+ G SS GY+V + S+ + CS+DF L++S+D P G G S+ V SP+ A+AG YT+E+DY+NGFGS+ RF +D+Y GDCG +++++CD+P IGC DS GDYDV +P T G Y IRVG+F D+ +Y CS+ FE V+ DD+
Sbjct: 1 MARTAFAAVA--FGMLSAAN-ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSF--CMDDV--CGDWVTALCPYGADGC-PDSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGT-----GDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFE-VDTSDDM 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1884.4699.1 >prot_H-paniculata_contig1884.4699.1 ID=prot_H-paniculata_contig1884.4699.1|Name=mRNA_H-paniculata_contig1884.4699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDback to top mRNA from alignment at H-paniculata_contig1884:16241..20166+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1884.4699.1 ID=mRNA_H-paniculata_contig1884.4699.1|Name=mRNA_H-paniculata_contig1884.4699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3926bp|location=Sequence derived from alignment at H-paniculata_contig1884:16241..20166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1884:16241..20166+ >mRNA_H-paniculata_contig1884.4699.1 ID=mRNA_H-paniculata_contig1884.4699.1|Name=mRNA_H-paniculata_contig1884.4699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig1884:16241..20166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |