mRNA_H-paniculata_contig18811.4682.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18811.4682.1
Unique NamemRNA_H-paniculata_contig18811.4682.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18811.4682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18811contigH-paniculata_contig18811:2033..3209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.9451354-CDS-H-paniculata_contig18811:2032..21241622929447.9451354-CDS-H-paniculata_contig18811:2032..2124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18811 2033..2124 +
1691480865.4384477-CDS-H-paniculata_contig18811:2032..21241691480865.4384477-CDS-H-paniculata_contig18811:2032..2124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18811 2033..2124 +
1622929447.9670632-CDS-H-paniculata_contig18811:2950..32091622929447.9670632-CDS-H-paniculata_contig18811:2950..3209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18811 2951..3209 +
1691480865.4492192-CDS-H-paniculata_contig18811:2950..32091691480865.4492192-CDS-H-paniculata_contig18811:2950..3209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18811 2951..3209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18811.4682.1prot_H-paniculata_contig18811.4682.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18811 2033..3209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18811.4682.1

>prot_H-paniculata_contig18811.4682.1 ID=prot_H-paniculata_contig18811.4682.1|Name=mRNA_H-paniculata_contig18811.4682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
VAKLISRAEAPPSTAAVDSLSIRGTGHVTASVSTRSPRNGGTSSAGTSRQ
HAQRESAAAAAIASAAAVGAGAGASRSTSNTNIIETTKKRQQYWQAGGAA
AATSSAVAGAEGRGGGK
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mRNA from alignment at H-paniculata_contig18811:2033..3209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18811.4682.1 ID=mRNA_H-paniculata_contig18811.4682.1|Name=mRNA_H-paniculata_contig18811.4682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1177bp|location=Sequence derived from alignment at H-paniculata_contig18811:2033..3209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCCAAGCTGATAAGCCGAGCCGAGGCCCCACCGTCGACTGCTGCAGT
GGACTCATTGTCAATTAGAGGAACAGGACATGTGACGGCAAGGTGATTGT
ACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTTTCCTCT
GTCTCAGACATGGCAGATAGACTTCCCTCGAGATACGTTCAGTATATTAC
TACTATTGCTGCAATAGATCATGTCCCCAGTATGCCGAGTAAATACACAT
GTTGACTTGATCTACCTTAACGGGAGGCATGTCTAGCTGGGCAACGCTGA
TGTTGGGTAGGGTTGGTTACATACAACGTGTAACCTCGTCCCCCCCCCCC
CCCCCTATCGATCTAATTTTGCTAGTAAATGTATACAGTTGCAGATAACC
CCAACATGGGTACGTACAATGGACCTATTATATGAGTCCCCCCGCCCCGT
CGCTTCCACCGCATAGCACAGCACAGTACATAAAACCCCTCCCTTGGGAC
CATTGCCCAGATGGATAGGGTAGCCCGTGTACTGGGCAAATCTAGGAGGC
ATCTAAAGGGCTTCAGTCGGTGCGGATCTCATTTCTGACCTCAATCCTAA
CATTTCCTGTGTGTTTGACAGCGGCACATAGGTAGTCCCCCCGGGGGCAT
CTATCTGCTTGGGGGATCACGGATAATTTGGCCTAGTAAAAAACGAATGA
AAAATTTGATGATATATGATACAATGTATTTAATGTTCGAAACCTGGACG
AAACATCCCCAGAGTAAGATAATGTATTGGAAAAGGCTTTTCGCTGATCT
CCTAGGGATTAAACTTGATGAAAAAGAAACAAAAACAAACGAGTGCGCCC
CTTCGACACTTACCACTGCCGTCCACCGCCATCCACCGCCACAAACGACA
CCCCCTCCTCAAGAACAGTGTCTCTACCAGGAGCCCTAGAAATGGAGGTA
CCTCCAGCGCTGGCACTAGCCGACAACATGCGCAGCGCGAAAGCGCCGCC
GCCGCCGCTATTGCTTCTGCTGCTGCCGTCGGTGCTGGTGCTGGTGCTAG
CAGATCCACCAGCAACACCAACATCATTGAGACGACCAAGAAACGACAAC
AGTATTGGCAGGCAGGCGGAGCAGCAGCAGCAACATCATCAGCAGTAGCA
GGAGCAGAAGGGAGAGGGGGAGGGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18811:2033..3209+

>mRNA_H-paniculata_contig18811.4682.1 ID=mRNA_H-paniculata_contig18811.4682.1|Name=mRNA_H-paniculata_contig18811.4682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig18811:2033..3209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCCAAGCTGATAAGCCGAGCCGAGGCCCCACCGTCGACTGCTGCAGT
GGACTCATTGTCAATTAGAGGAACAGGACATGTGACGGCAAGGTCGCCAA
GCTGATAAGCCGAGCCGAGGCCCCACCGTCGACTGCTGCAGTGGACTCAT
TGTCAATTAGAGGAACAGGACATGTGACGGCAAGTGTCTCTACCAGGAGC
CCTAGAAATGGAGGTACCTCCAGCGCTGGCACTAGCCGACAACATGCGCA
GCGCGAAAGCGCCGCCGCCGCCGCTATTGCTTCTGCTGCTGCCGTCGGTG
CTGGTGCTGGTGCTAGCAGATCCACCAGCAACACCAACATCATTGAGACG
ACCAAGAAACGACAACAGTATTGGCAGGCAGGCGGAGCAGCAGCAGCAAC
ATCATCAGCAGTAGCAGGAGCAGAAGGGAGAGGGGGAGGGAAATGTCTCT
ACCAGGAGCCCTAGAAATGGAGGTACCTCCAGCGCTGGCACTAGCCGACA
ACATGCGCAGCGCGAAAGCGCCGCCGCCGCCGCTATTGCTTCTGCTGCTG
CCGTCGGTGCTGGTGCTGGTGCTAGCAGATCCACCAGCAACACCAACATC
ATTGAGACGACCAAGAAACGACAACAGTATTGGCAGGCAGGCGGAGCAGC
AGCAGCAACATCATCAGCAGTAGCAGGAGCAGAAGGGAGAGGGGGAGGGA
AA
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