mRNA_H-paniculata_contig1881.4681.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1881.4681.1
Unique NamemRNA_H-paniculata_contig1881.4681.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1881.4681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1881contigH-paniculata_contig1881:14071..16069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1881.4681.1prot_H-paniculata_contig1881.4681.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1881 14138..16069 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.8128953-UTR-H-paniculata_contig1881:14070..141371622929447.8128953-UTR-H-paniculata_contig1881:14070..14137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1881 14071..14137 +
1691480865.387073-UTR-H-paniculata_contig1881:14070..141371691480865.387073-UTR-H-paniculata_contig1881:14070..14137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1881 14071..14137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.8276129-CDS-H-paniculata_contig1881:14137..141581622929447.8276129-CDS-H-paniculata_contig1881:14137..14158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1881 14138..14158 +
1691480865.3978448-CDS-H-paniculata_contig1881:14137..141581691480865.3978448-CDS-H-paniculata_contig1881:14137..14158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1881 14138..14158 +
1622929447.8403668-CDS-H-paniculata_contig1881:15760..160691622929447.8403668-CDS-H-paniculata_contig1881:15760..16069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1881 15761..16069 +
1691480865.4157748-CDS-H-paniculata_contig1881:15760..160691691480865.4157748-CDS-H-paniculata_contig1881:15760..16069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1881 15761..16069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1881.4681.1

>prot_H-paniculata_contig1881.4681.1 ID=prot_H-paniculata_contig1881.4681.1|Name=mRNA_H-paniculata_contig1881.4681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MATPIAEEKQGEKLMVHGRSSSSNVNELSPSTARRRRRRDEISQLRQEHV
GGGGGGDAENSNDDDDPDQRRETPPSSRVTCFDTAPSKIPHEMGEGQVHD
NDHHDQHDGE
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mRNA from alignment at H-paniculata_contig1881:14071..16069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1881.4681.1 ID=mRNA_H-paniculata_contig1881.4681.1|Name=mRNA_H-paniculata_contig1881.4681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1999bp|location=Sequence derived from alignment at H-paniculata_contig1881:14071..16069+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGAATGAAGCCTCAAGCTGTTGGCTGAGGCACGGTAGGTTCTTGTTC
GACCATTATCTGCGGCAATGGCAACGCCTATAGCTGAGGTGAGCCTGCAC
CTATCGGAAGGGAGGCAAATATGCGTACATTGAATTTTTATTGTTGAAAT
CGAACGTGCCTACACTGACAGTACAGTATCAGTTGAACGGGTGATCCCAG
TTTGACAATAGACACTCAGTCCCAGAGTACTGGCGCGTAGCTCAGTTTCA
TCTGTAGTACAGCCGATACATGGGGAAGTTTCATTTAGTCTCACTCGTTC
GTTCGGCATTTTCCGGCGGTTCGTTTAGGCTACGTATTACTCTTCGAGCA
AGATGTATCGACAACGACGCCGTGAAGGTCCCCATGTCATATACTGTACG
ATCTCTTACAAGTGAGCATGTACTGACGGTCTTTTATGTCTAATTGACTA
TCGTGTGCTGTATGAGATATGTTCGCTCACGCTTTCAAAATGTTGAATCT
CGACACAACTCTCTCACAACTGTAGTTTTTTGGCTTGTGTGTACGGTCTG
TCCCAATCGTAGCATCAAATTGACCGATACTTTGCAACAAGCCTAGCCTT
TTGGTCGCAACACCGACGGTTTGATGATGTCGCCACACGCCGACAGTCTC
GAGCAAGGGTCCATAGTGGAAGCATGCGCGACCGAAGTCTGATCTTGATT
TCGCTAGCTTTTTTTTCTGATGTACCAATCAATGTCCTGCTCGTTTGTTC
GCATCCTACAGTTAGTACAGCAGCAGAGAGTAGTGTGTTGACCACCCTTG
CCGCGATCGGACATTTAGTTGAGGACTGAAAGCCAAGAATTTGGTCTCTA
ATTACGATGGGCAATAGCTCGGCAAGAGCGATCGCCACGTTGAGGTTGCC
TTTTTCTAGCCCGCAACTGTATTTTGTCCGCAATACACCGCTTTGCGTTG
GCCCCTGTGACAACAGCCATACGAGGCTCCGAGCCTTCCGTGTCGCACGT
TGGTCCGTCCCTACGTGGCAAGTGCCTCCGGTGGGCGTGCTTTTTTTGCT
GCTCATGCAGAAGATGCGCATTAAAGTTTACCATCTCCTACTAGTGAAGA
TTTACAGAGGCAGGCAGGCCACAGCTAAACCTCAGACACATCTAAGTCAG
ACCCTCTCAAACTATTCCTTTTGACGTGAGGTGAAGATGAAAAGTTGGAC
ACAGGATGGAAACCGGTCGGGAGGAACGTTGTTTTTGTCAACGGTACGAC
GTAACAAGAAAAACGAGCTATTTATAACAGCCACATTTGGCGAACAAGCA
GGACAACGATATAGATATTTTATCGAGTTTTCAAAAAGGTCGCGTCTGGA
CATCCCACCATGTAGAAGTGATACAGTGAGCAGGGGTCCATCTGGAAGGG
TTGAGTATTCAGCATCGGGCAACGCACCGAAGTGTCCCTTCCTCCTCCGA
CAAAACACAACACCAAAAACAAGCCCAACCCTTAGGAAGTTTCGCTTCAT
ATCTCTCAATTGATTTGTCGCGAAGGCACTAGATGCAGTGATTTCTTTCT
TTTTTTTATGAGTGCCATAGTAGATAGTGCCAAAATTACCTAGCTACAGA
CAGGTGTCTTTCCCTAGTGCAGGGGGAGTATTGGTTGGATCTACCTCACG
CCCAATTTCCGACTGATTCTTTCGTATTCCGCTGGTTCAGGAAAAGCAGG
GTGAGAAATTGATGGTACATGGCAGGAGCAGTAGTAGCAATGTCAATGAG
CTGAGTCCTTCTACTGCGCGAAGGCGACGCCGTAGAGACGAAATCTCACA
ACTAAGGCAAGAGCATGTGGGTGGCGGTGGCGGGGGGGATGCCGAAAACA
GTAATGACGATGATGATCCCGACCAGAGGAGAGAAACGCCTCCTTCTTCT
CGAGTCACTTGCTTTGATACAGCACCATCCAAGATTCCACACGAAATGGG
AGAAGGACAGGTCCACGATAATGATCATCACGATCAACACGATGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1881:14071..16069+

>mRNA_H-paniculata_contig1881.4681.1 ID=mRNA_H-paniculata_contig1881.4681.1|Name=mRNA_H-paniculata_contig1881.4681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig1881:14071..16069+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAACGCCTATAGCTGAGATGGCAACGCCTATAGCTGAGGAAAAGCA
GGGTGAGAAATTGATGGTACATGGCAGGAGCAGTAGTAGCAATGTCAATG
AGCTGAGTCCTTCTACTGCGCGAAGGCGACGCCGTAGAGACGAAATCTCA
CAACTAAGGCAAGAGCATGTGGGTGGCGGTGGCGGGGGGGATGCCGAAAA
CAGTAATGACGATGATGATCCCGACCAGAGGAGAGAAACGCCTCCTTCTT
CTCGAGTCACTTGCTTTGATACAGCACCATCCAAGATTCCACACGAAATG
GGAGAAGGACAGGTCCACGATAATGATCATCACGATCAACACGATGGGGA
GGAAAAGCAGGGTGAGAAATTGATGGTACATGGCAGGAGCAGTAGTAGCA
ATGTCAATGAGCTGAGTCCTTCTACTGCGCGAAGGCGACGCCGTAGAGAC
GAAATCTCACAACTAAGGCAAGAGCATGTGGGTGGCGGTGGCGGGGGGGA
TGCCGAAAACAGTAATGACGATGATGATCCCGACCAGAGGAGAGAAACGC
CTCCTTCTTCTCGAGTCACTTGCTTTGATACAGCACCATCCAAGATTCCA
CACGAAATGGGAGAAGGACAGGTCCACGATAATGATCATCACGATCAACA
CGATGGGGAG
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