mRNA_H-paniculata_contig18803.4677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18803.4677.1
Unique NamemRNA_H-paniculata_contig18803.4677.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18803.4677.1 vs. uniprot
Match: D7FPB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB0_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.610e-79
Identity = 141/234 (60.26%), Postives = 161/234 (68.80%), Query Frame = 1 
Query:   10 MLQALERMVNSRRCESRLVDEGLIETLVSLCFNEIASFVHGCQHYLRQRQEIEGASVMGSNNASAAGQLPHVIGGGGDGHTRLQSGVGGGSRAGAGRSASMMSVGDVSVALGIGGRRRREADPRFTEEKLEVAMDVARTCMSMFANLAIRGYCQRALHAGVLAHINSVSIGDGDDPHMTGSLSQLVLELLVTALLSQADTLSFVAQGPLDAIMRCLKGGREGQQQCALDALAKV 711
            ML+ALERM  S RCE RL+DEGL E LV LCFNE+ASFVHGCQ+YLRQR+EIEG  V  S                        +           R  S++S G +S   G GGRR+ EA+ RFTEEKLEVAMDVARTCM+MFA+L  RG+ +RALHAGVLAHINSV IG GDDPHMTGSLSQLVL+L   A+  + + LSFV QGPLDAIMRCL+GGR  QQQCALDAL  V
Sbjct:    1 MLKALERMAGSPRCEKRLIDEGLFEALVGLCFNEVASFVHGCQNYLRQRREIEG--VFSSAXXXXXXXXXXXXXXXXXXXXXXXA-----------RCESIVSTGGMSAGAGAGGRRK-EAEGRFTEEKLEVAMDVARTCMAMFAHLTARGHGRRALHAGVLAHINSVPIGAGDDPHMTGSLSQLVLDLSAVAMEGEENRLSFVGQGPLDAIMRCLRGGRAAQQQCALDALTTV 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18803.4677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPB0_ECTSI1.610e-7960.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18803contigH-paniculata_contig18803:153..4332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-15_004080.1
Exons5
Model size717
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18803.4677.1prot_H-paniculata_contig18803.4677.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18803 153..4323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.4788702-CDS-H-paniculata_contig18803:152..2941622929447.4788702-CDS-H-paniculata_contig18803:152..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 153..294 -
1691480865.2511985-CDS-H-paniculata_contig18803:152..2941691480865.2511985-CDS-H-paniculata_contig18803:152..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 153..294 -
1622929447.4928265-CDS-H-paniculata_contig18803:808..8741622929447.4928265-CDS-H-paniculata_contig18803:808..874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 809..874 -
1691480865.2664592-CDS-H-paniculata_contig18803:808..8741691480865.2664592-CDS-H-paniculata_contig18803:808..874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 809..874 -
1622929447.5221405-CDS-H-paniculata_contig18803:2700..28191622929447.5221405-CDS-H-paniculata_contig18803:2700..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 2701..2819 -
1691480865.2747734-CDS-H-paniculata_contig18803:2700..28191691480865.2747734-CDS-H-paniculata_contig18803:2700..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 2701..2819 -
1622929447.5360951-CDS-H-paniculata_contig18803:3388..37061622929447.5360951-CDS-H-paniculata_contig18803:3388..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 3389..3706 -
1691480865.2824328-CDS-H-paniculata_contig18803:3388..37061691480865.2824328-CDS-H-paniculata_contig18803:3388..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 3389..3706 -
1622929447.5652437-CDS-H-paniculata_contig18803:4260..43231622929447.5652437-CDS-H-paniculata_contig18803:4260..4323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 4261..4323 -
1691480865.2903972-CDS-H-paniculata_contig18803:4260..43231691480865.2903972-CDS-H-paniculata_contig18803:4260..4323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18803 4261..4323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.5767858-UTR-H-paniculata_contig18803:4323..43321622929447.5767858-UTR-H-paniculata_contig18803:4323..4332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18803 4324..4332 -
1691480865.2986572-UTR-H-paniculata_contig18803:4323..43321691480865.2986572-UTR-H-paniculata_contig18803:4323..4332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18803 4324..4332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18803.4677.1

>prot_H-paniculata_contig18803.4677.1 ID=prot_H-paniculata_contig18803.4677.1|Name=mRNA_H-paniculata_contig18803.4677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MLQALERMVNSRRCESRLVDEGLIETLVSLCFNEIASFVHGCQHYLRQRQ
EIEGASVMGSNNASAAGQLPHVIGGGGDGHTRLQSGVGGGSRAGAGRSAS
MMSVGDVSVALGIGGRRRREADPRFTEEKLEVAMDVARTCMSMFANLAIR
GYCQRALHAGVLAHINSVSIGDGDDPHMTGSLSQLVLELLVTALLSQADT
LSFVAQGPLDAIMRCLKGGREGQQQCALDALAKVS*
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mRNA from alignment at H-paniculata_contig18803:153..4332-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18803.4677.1 ID=mRNA_H-paniculata_contig18803.4677.1|Name=mRNA_H-paniculata_contig18803.4677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4180bp|location=Sequence derived from alignment at H-paniculata_contig18803:153..4332- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTGTCCATGCTTCAGGCCTTGGAAAGGATGGTGAACAGCCGGCGATG
CGAGTCTCGTCTCGTTGACGAGGTACTCACTGAATACGCCTGCGTGCGTT
TCGGTTGCCGTAGCTTTGAGATGAAAGTTTGTTCTGCGCGCTTGTTGTCA
GGAGGGTTGGTTCTATTCTATTCTATTGTGTTCTGTTGTATCCTCCTATG
TTATGTTATATTATGCTATGCTCTGATATATTAATCAGATCAGAACAGAA
CATAACAGATCAGATAGACTCTTCTACCACATGTTTTCTTGTGTGCCGTC
CGAATCGGTTCGGTTGTGTGCACTAAAGATAATAGCTGCACAATGAAGGT
CCAAATTTGACAGCCGCTCCGGTCCACAGGTCTGAAGCTTTTCTTATGCG
AAGTGCTCATGATGTCGACTTTCTTCCAAACACCAAGATTTGTTCTTGCA
TCTCTCGCTGCGTGTGTAATCACTCTGCAATACCAGAAAGGTAACCTCGA
GTAAAGTATCTCCACGAAATGGGACAAGTTTTACTTCTGCCCCCGCTCCG
CTCCTTACTCGCCGCCCCTTACCCGCCGCCCCTTGCCGCACCATTTGCCC
CGGAATCACACACCACGAAACATCAGGGACTCATAGAAACGCTAGTAAGC
CTGTGCTTTAACGAGATTGCGTCCTTTGTGCACGGGTGTCAGCACTACCT
GCGACAGCGCCAAGAGATAGAAGGCGCTTCCGTAATGGGTTCCAATAATG
CCTCGGCCGCCGGCCAATTACCACATGTTATTGGTGGCGGCGGGGATGGC
CACACGCGGTTACAGTCCGGGGTAGGGGGTGGAAGTCGGGCGGGAGCGGG
GCGCTCCGCTTCTATGATGTCGGTCGGAGACGTGTCGGTAGCATTGGGGA
TTGGGGGAAGGAGAAGACGAGAGGCAGACCCGCGGTTTACGGAGGTAAAG
ATATGTCTGGTTTTGTTTTGCGCGTTGATGTTTTTATTTTTTCTCTTATG
AAGCATCGAGAACGTGCTTCTTAAATACACCAAAAACCTCTTCGTCAGCA
TATATTTGTACTTATAGAAACAACGGTACTATCATGTACTTAATATCGGG
CATCGCAATAATACGATAATTGCAAGTCATCCTTCTGGTATTGTCTTAAC
GGGCTCTTTGTGTTACGGAATTCGCTTGTCGTGTATCTCACTCCTTTTTG
TTGATCGTTACCTGTCATTATCCCGAAGTGGAAGGGTGCATTTGGAATAA
TTAATGTTTTCACAGGGGTTTGTATCCTCGTGTTTTTTGTGCCGCTTTTG
TGGGTGGTATGCCTGCTACTGTCATAGACGCGGGAGGATGATAAACGAAT
AGGACTTTCGTGACCAATTGATGCAGACATGTTAGCAATGAAAAACAATA
TTTTGACACACGTGCAGCATACTGTGAGACTGACTCCATTTTTCACCGGG
AGGACCGATAACACAAGTTCAAGGACCCTTATACGATGCCGTTGAAATCT
GTTTTGCGAGCAGGAAAAGCTGGAAGTAGCTATGGATGTGGCCCGAACAT
GCATGTCAATGTTCGCGAACCTCGCCATCAGGGGGTACTGTCAGCGAGCC
CTGCACGCGGGGGTGTTGGCCCACATCAATAGGTATGATTTCTTCGATGC
TACTGAATCGTGACATATATTTGAGTCTATGGGATGCAATCTAAGCTCAG
TTTCGACAGAAGACCAAGACTTGGTGCTCCCACAACGTGTGTCAGGCGGG
TGCAAGCCGGGCATAAAACGCCATTACTGTCGCCAATTGAATTATATGCT
TTTTCGCAGATTCAAGCACCCTAAACAACGCCAACTGGTAGAGAATGCCA
CCTCGTGTATGTACCGCTCGTGTGCATCGTATGCTTTCCTTCTCCGAAAC
TGTCGTTGCTACTTCGGTGTCGAACTGATCAAGAGATTTTCTTTCGCCTT
TTTCATTCCCCTCCATAATCTCACTGTAGTAGGGAAAGTGTGGAAATAAT
TGGAATTTTCTGCAGAGGAGAATACGAAGAGTAAGAACATGGTCAGAGTA
GAGGAAAAATTAACGGGGGCAAATGAAGTTAGACAATAAAAAGGGCTGAA
AAGAGAAGCTTCAAGTAAGGAAGGCTTGGAAAAATAGCAAGCCTGGATGA
AGGGATAGGGTTGGAAACATACCTACATGGACCATTAAACAGAGGCATAT
AGTTGAAAGTCAAATTTAGGACAGGGAGGGGATCTTGACCCTCAAGGAAT
GTAGGAAAAGATTCAGAAAATTGACGAGGACGTCGACGATCTGTTCAAGT
GCGGCTGCACTAGTGCGTGCTAGGACCAAATCCACATCGTGGGAGAACGC
TTCCTGTATGAACAAGAGAGAGAAGCCAATGTGAACGAATTAGGGAAAAT
CGAAGGATGCAATAAAGAGGCATTTGGATCCTGGGATTGCGACGCAGAAG
GCTACAGCGGTCCTAAGAGATAGAATTTGACCTGAGCGCGCGAGGATTGA
GGTAGATAAGGTAGGGAAAACAAATTGAACCACAGTTGGCAACGTAAGAA
AGAGCGGATGGCCATCGGCGGAAATCGCTCTGGTAAGAGCACAGTTCTAT
TCTCTCGAGGACGCGTGGTCAATGCTCCAACAACTACGGCACGCCTAACA
TGAGTACGTCCCTCCCTCTTCCAAATCTCACTTGGCAGGACGCGTAGCAG
GTTTCCACTGAACTAAATCAACTCTTCGCGAACGCGAGCCCTGTCCGCCA
TTATGGCGCATGTAGAAACATCCAACTCAGATTGAGTAGATATAAATTGA
ATATGTACGTAACACATTCAATTACGTACATGTGATGTTCATGTCGAAGG
CCAAGAACGGCATTGGCCCTCTCAGGTACCACCAAAACTGCCCGTCTTCA
GAAGGTGAATAGCCCCCCGATGTGCCGACCAAGGGTTTGACTTTCCGGTT
TGGTCGATTTGTGAACAAGCAATCTAAGAGCTTAGAAATGCTCAGTATAC
CCTCATCATGTTTTTCAATTTTTCTGTTGTTTTCTACAGTAATTTATGTT
GTTCTACTTGATGTTTTGACTCGCTGCTTACTCTATCGTACTTTGTCTAC
ATCGTATTGGCATAATGGAGATGCTGCCCCGCTGTTAAAGCTGTCCTTGG
CAATAGGTGCGAGTGGTGATGTTGCTATGTTGTACCCCCCGCTCCCCTCC
CAACACGCGAGGGTTGAGATGTATAGGGTACATTAAACACTTTTGAGCCA
CATTTGGCAAAGCAGGAAAGAACGATTGTCTATCGGAAATCGCTTTGATA
GGAACAAATCTCCGGCCTCTCGAGGACGCGGGGTCAATGGTCTGATAACG
ACGACACGTAAAACATGAGTATACCCCCCCGCTGCATTCCCCGCTCTGGG
CGTCATCCTCGCCGCCGTCACTCTGCTCTCCCCTGGTTGACGCTTGGCGG
TGGCGCAGCGTATCGATTGGAGATGGGGATGATCCACATATGACGGGTTC
GCTGAGCCAGCTGGTTTTGGAGTTGTCCAAGATTGCGCACGAATCTGAGG
CACGCTTAAATTCTTGAAAATTGCACACACCGTAGCGCTTGTTGATACCT
GCTTGTGTATTGTTTCGATATTGTTTCATGTTTTGTCGGTGCATTTCGCT
GCTATACGTGCGCAAAGGAATTACAGCGTCTTACTGGTATTTTCCCTTGT
AGGCTGTGGCATTGTGGTGACAGGTGTTATGATCTTTGTCAAACCAGCCA
ACGTTCCCTGTCCGCCCAGCTCTACAAACCCTCGCGCTACTATACTAAAA
ATTTTGCTTCTTTTCTTATGGCATGAATTTATTACATCATCCATGTAAGT
GCGGTGAGGTCGATACACACCACTCGCTCAGTTTGCCCCTGCTGCGGTAG
GTAGCCGTGGTTTGGACCTTTTGTCGCTTCCACAATGCATTATCCGAGTC
CGTACCTTCGTATAGACAGGCAGCAAAATATGCACGCATGAGTAGCGCTT
CGCCGTTGTAACGCCAACGTTGTTGTTTACCCTATTAGACTTGTGACTGC
GTTATTGTCGCAGGCGGACACACTGTCTTTTGTAGCCCAAGGGCCCCTCG
ACGCCATCATGCGATGTCTCAAGGGAGGCAGAGAAGGACAGCAACAGTGC
GCCCTCGATGCCCTGGCCAAGGTTTCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18803:153..4332-

>mRNA_H-paniculata_contig18803.4677.1 ID=mRNA_H-paniculata_contig18803.4677.1|Name=mRNA_H-paniculata_contig18803.4677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig18803:153..4332- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCAGGCCTTGGAAAGGATGGTGAACAGCCGGCGATGCGAGTCTCG
TCTCGTTGACGAGATGCTTCAGGCCTTGGAAAGGATGGTGAACAGCCGGC
GATGCGAGTCTCGTCTCGTTGACGAGGGACTCATAGAAACGCTAGTAAGC
CTGTGCTTTAACGAGATTGCGTCCTTTGTGCACGGGTGTCAGCACTACCT
GCGACAGCGCCAAGAGATAGAAGGCGCTTCCGTAATGGGTTCCAATAATG
CCTCGGCCGCCGGCCAATTACCACATGTTATTGGTGGCGGCGGGGATGGC
CACACGCGGTTACAGTCCGGGGTAGGGGGTGGAAGTCGGGCGGGAGCGGG
GCGCTCCGCTTCTATGATGTCGGTCGGAGACGTGTCGGTAGCATTGGGGA
TTGGGGGAAGGAGAAGACGAGAGGCAGACCCGCGGTTTACGGAGGGACTC
ATAGAAACGCTAGTAAGCCTGTGCTTTAACGAGATTGCGTCCTTTGTGCA
CGGGTGTCAGCACTACCTGCGACAGCGCCAAGAGATAGAAGGCGCTTCCG
TAATGGGTTCCAATAATGCCTCGGCCGCCGGCCAATTACCACATGTTATT
GGTGGCGGCGGGGATGGCCACACGCGGTTACAGTCCGGGGTAGGGGGTGG
AAGTCGGGCGGGAGCGGGGCGCTCCGCTTCTATGATGTCGGTCGGAGACG
TGTCGGTAGCATTGGGGATTGGGGGAAGGAGAAGACGAGAGGCAGACCCG
CGGTTTACGGAGGAAAAGCTGGAAGTAGCTATGGATGTGGCCCGAACATG
CATGTCAATGTTCGCGAACCTCGCCATCAGGGGGTACTGTCAGCGAGCCC
TGCACGCGGGGGTGTTGGCCCACATCAATAGGAAAAGCTGGAAGTAGCTA
TGGATGTGGCCCGAACATGCATGTCAATGTTCGCGAACCTCGCCATCAGG
GGGTACTGTCAGCGAGCCCTGCACGCGGGGGTGTTGGCCCACATCAATAG
CGTATCGATTGGAGATGGGGATGATCCACATATGACGGGTTCGCTGAGCC
AGCTGGTTTTGGAGTTCGTATCGATTGGAGATGGGGATGATCCACATATG
ACGGGTTCGCTGAGCCAGCTGGTTTTGGAGTTACTTGTGACTGCGTTATT
GTCGCAGGCGGACACACTGTCTTTTGTAGCCCAAGGGCCCCTCGACGCCA
TCATGCGATGTCTCAAGGGAGGCAGAGAAGGACAGCAACAGTGCGCCCTC
GATGCCCTGGCCAAGGTTTCTTGAACTTGTGACTGCGTTATTGTCGCAGG
CGGACACACTGTCTTTTGTAGCCCAAGGGCCCCTCGACGCCATCATGCGA
TGTCTCAAGGGAGGCAGAGAAGGACAGCAACAGTGCGCCCTCGATGCCCT
GGCCAAGGTTTCTTGA
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