mRNA_H-paniculata_contig18751.4655.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18751.4655.1
Unique NamemRNA_H-paniculata_contig18751.4655.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18751.4655.1 vs. uniprot
Match: A0A6H5JG94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG94_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.170e-11
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:   49 RTGDMAQMININRGLLPPVMSVSRIQHWFGHIKTIPEIDRLVSTVGEGVPVDV-TEGDDLTAELRYGNHTNADRHTPLVLDQVHPDLKYGRTLTFPLEMATSIPGLRIS 372
            R GD+A+ +  N  ++ P +  + ++ +FG  K  P+I+ L++ +  GVPV   T   DL   LRYGNH++AD H PL+ +++  D++  R L      A  IP LR+S
Sbjct:    8 RIGDVARCLGGN--MVTPPVDPAAVRDYFGRRKGFPQIEELMTIITGGVPVITETSSTDLERALRYGNHSSADGHLPLLWEKLGNDVRRERCLVLEKTSAHEIPNLRVS 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18751.4655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JG94_9PHAE4.170e-1135.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18751contigH-paniculata_contig18751:2508..3063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929444.5996408-UTR-H-paniculata_contig18751:2507..25671622929444.5996408-UTR-H-paniculata_contig18751:2507..2567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18751 2508..2567 +
1691480863.998355-UTR-H-paniculata_contig18751:2507..25671691480863.998355-UTR-H-paniculata_contig18751:2507..2567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18751 2508..2567 +
1622929444.6328208-UTR-H-paniculata_contig18751:2894..30631622929444.6328208-UTR-H-paniculata_contig18751:2894..3063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18751 2895..3063 +
1691480864.0136385-UTR-H-paniculata_contig18751:2894..30631691480864.0136385-UTR-H-paniculata_contig18751:2894..3063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18751 2895..3063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929444.616604-CDS-H-paniculata_contig18751:2567..28941622929444.616604-CDS-H-paniculata_contig18751:2567..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18751 2568..2894 +
1691480864.0063462-CDS-H-paniculata_contig18751:2567..28941691480864.0063462-CDS-H-paniculata_contig18751:2567..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18751 2568..2894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18751.4655.1prot_H-paniculata_contig18751.4655.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18751 2568..2894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18751.4655.1

>prot_H-paniculata_contig18751.4655.1 ID=prot_H-paniculata_contig18751.4655.1|Name=mRNA_H-paniculata_contig18751.4655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MAQMININRGLLPPVMSVSRIQHWFGHIKTIPEIDRLVSTVGEGVPVDVT
EGDDLTAELRYGNHTNADRHTPLVLDQVHPDLKYGRTLTFPLEMATSIPG
LRISLWAW*
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mRNA from alignment at H-paniculata_contig18751:2508..3063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18751.4655.1 ID=mRNA_H-paniculata_contig18751.4655.1|Name=mRNA_H-paniculata_contig18751.4655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig18751:2508..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTTTGGAAACGATAGCAGAATTATCACGAAAATATTGGTACAACAG
GACGGGCGATATGGCCCAAATGATAAACATCAACCGAGGACTATTACCTC
CCGTCATGAGCGTGTCAAGGATTCAGCATTGGTTTGGACACATAAAAACA
ATTCCGGAGATTGATCGTTTGGTATCCACCGTGGGCGAAGGGGTCCCAGT
CGACGTAACGGAAGGAGATGACCTAACCGCCGAATTGAGATACGGCAACC
ACACCAATGCCGATAGGCATACCCCACTCGTTCTAGACCAAGTACATCCG
GATCTGAAATACGGTAGAACACTCACGTTTCCCCTCGAGATGGCAACATC
CATTCCTGGACTTCGAATTTCACTTTGGGCGTGGTAGTGAAACCTAACAA
AGTCAGAACAATTCACGACCTTACCTTCACCCAACACAAGAAAATTAACA
GCGTAAATAGTCAGACGGACTTCAAACAAGCGCCGCCATATGAACTTGGT
CACGTCTTACGAAACGGTTTACTCGGCATCCTTGCCCTGAGAAAAACCTT
CGGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig18751:2508..3063+

>mRNA_H-paniculata_contig18751.4655.1 ID=mRNA_H-paniculata_contig18751.4655.1|Name=mRNA_H-paniculata_contig18751.4655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig18751:2508..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCAAATGATAAACATCAACCGAGGACTATTACCTCCCGTCATGAG
CGTGTCAAGGATTCAGCATTGGTTTGGACACATAAAAACAATTCCGGAGA
TTGATCGTTTGGTATCCACCGTGGGCGAAGGGGTCCCAGTCGACGTAACG
GAAGGAGATGACCTAACCGCCGAATTGAGATACGGCAACCACACCAATGC
CGATAGGCATACCCCACTCGTTCTAGACCAAGTACATCCGGATCTGAAAT
ACGGTAGAACACTCACGTTTCCCCTCGAGATGGCAACATCCATTCCTGGA
CTTCGAATTTCACTTTGGGCGTGGTAGATGGCCCAAATGATAAACATCAA
CCGAGGACTATTACCTCCCGTCATGAGCGTGTCAAGGATTCAGCATTGGT
TTGGACACATAAAAACAATTCCGGAGATTGATCGTTTGGTATCCACCGTG
GGCGAAGGGGTCCCAGTCGACGTAACGGAAGGAGATGACCTAACCGCCGA
ATTGAGATACGGCAACCACACCAATGCCGATAGGCATACCCCACTCGTTC
TAGACCAAGTACATCCGGATCTGAAATACGGTAGAACACTCACGTTTCCC
CTCGAGATGGCAACATCCATTCCTGGACTTCGAATTTCACTTTGGGCGTG
GTAG
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