mRNA_H-paniculata_contig18683.4623.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18683.4623.1
Unique NamemRNA_H-paniculata_contig18683.4623.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 9.350e-27
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 MGGSLLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKVD 243
            M GS+LR+VP    RVSTHI AFDMD TLIK+KSGKRFGD   DWQL +  I + L+ WH+RGYK+A+ISNQ+GVG GKVD
Sbjct:  266 MEGSVLRWVPDRS-RVSTHIVAFDMDGTLIKTKSGKRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTGKVD 345
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A182J3G3_9DIPT (FHA_2 domain-containing protein n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182J3G3_9DIPT)

HSP 1 Score: 82.4 bits (202), Expect = 1.820e-16
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    7 GSLLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            G LL      G   S  IAA+DMD TLIK+KSG  F   + DWQ+  P +   LKA H+ G+K+ + +NQ G+GKGKV
Sbjct:  216 GKLLHLYTSAGVVASDKIAAYDMDGTLIKTKSGNVFPKSIDDWQIAFPEVPGKLKALHKNGFKLVIFTNQAGIGKGKV 293
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A182PGC7_9DIPT (FHA_2 domain-containing protein n=1 Tax=Anopheles epiroticus TaxID=199890 RepID=A0A182PGC7_9DIPT)

HSP 1 Score: 81.6 bits (200), Expect = 3.390e-16
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   13 LLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKVD 243
            LL      G   S  +AA+DMD TLIK+KSG  F   V DWQ+  P + + LKA H  GYK+ + +NQ G+GKGKV+
Sbjct:  203 LLHIYTSAGVVASEKVAAYDMDGTLIKTKSGNVFPKSVDDWQIAFPEVPAKLKALHANGYKLVIFTNQAGIGKGKVN 279
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A182MXB4_9DIPT (FHA_2 domain-containing protein n=1 Tax=Anopheles dirus TaxID=7168 RepID=A0A182MXB4_9DIPT)

HSP 1 Score: 80.9 bits (198), Expect = 6.310e-16
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    7 GSLLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            G LL      G   S  IAA+DMD TLIK+KSG  F   + DWQ+  P +   LK+ H  G+K+ + +NQ G+GKGKV
Sbjct:  196 GKLLHIYTSAGVIASEKIAAYDMDGTLIKTKSGNVFPKSIDDWQIAFPEVPGKLKSLHRNGFKLVIFTNQAGIGKGKV 273
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: UPI0014555825 (uncharacterized protein LOC117289643 isoform X1 n=3 Tax=Asterias rubens TaxID=7604 RepID=UPI0014555825)

HSP 1 Score: 79.7 bits (195), Expect = 1.640e-15
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    7 GSLLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            G L+ +  KG  R S  IA FD+D T+I +KSGK F  +  DW++++P +   LK  H  GYK+ + +NQLG+GKGK+
Sbjct:  398 GKLVLYTSKG-VRASNKIAGFDLDGTIITTKSGKVFARDADDWRIIYPEVPGKLKKLHSEGYKIVLFTNQLGIGKGKL 474
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A182QB07_9DIPT (FHA_2 domain-containing protein n=1 Tax=Anopheles farauti TaxID=69004 RepID=A0A182QB07_9DIPT)

HSP 1 Score: 78.6 bits (192), Expect = 4.110e-15
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    7 GSLLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            G LL      G   S  IAA+DMD TLIK+KSG  F   + DWQ+    + + LK  H  G+K+ + +NQ G+GKGKV
Sbjct:  223 GKLLHIYTSAGVMASEKIAAYDMDGTLIKTKSGNVFPKSIDDWQIAFSEVPNKLKTLHRNGFKLVIFTNQAGIGKGKV 300
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A182YQ91_ANOST (FHA_2 domain-containing protein n=2 Tax=Anopheles stephensi TaxID=30069 RepID=A0A182YQ91_ANOST)

HSP 1 Score: 78.2 bits (191), Expect = 5.590e-15
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   10 SLLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            +LL      G   S  +AA+DMD TLIK+KSG  F   + DWQ+  P +   LK  H  G+K+ + +NQ G+GKGKV
Sbjct:  192 ALLHVYTSAGVVASDRVAAYDMDGTLIKTKSGNVFPKSIDDWQIAFPEVPGKLKTLHRNGFKLVIFTNQAGIGKGKV 268
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A1S4H8L3_ANOGA (FHA_2 domain-containing protein n=10 Tax=gambiae species complex TaxID=44542 RepID=A0A1S4H8L3_ANOGA)

HSP 1 Score: 77.8 bits (190), Expect = 7.680e-15
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   13 LLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            LL      G   S  +AA+DMD TLIK+KSG  F   + DWQ+    + + LK+ H  GYK+ + +NQ G+GKGKV
Sbjct:  232 LLHIFTSAGVMASEKVAAYDMDGTLIKTKSGNVFPKSIDDWQIAFAEVPAKLKSLHRNGYKLVIFTNQAGIGKGKV 307
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A182FTM2_ANOAL (Phosphoinositide 5-phosphatase n=1 Tax=Anopheles albimanus TaxID=7167 RepID=A0A182FTM2_ANOAL)

HSP 1 Score: 77.4 bits (189), Expect = 1.090e-14
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   16 LRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            L      G   S+ IAA+DMD TLIK+KSG  F   + DWQ+  P +   LK+ H+ G+K+ + +NQ G+GKGKV
Sbjct: 1373 LHIYTSAGVVASSKIAAYDMDGTLIKTKSGNVFPKSIDDWQIAFPEVPGKLKSLHKDGFKLVIFTNQAGIGKGKV 1447
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BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Match: A0A182T3N0_9DIPT (Uncharacterized protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182T3N0_9DIPT)

HSP 1 Score: 76.6 bits (187), Expect = 1.380e-14
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   16 LRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHPNIVSALKAWHERGYKMAVISNQLGVGKGKV 240
            L      G   S  +AA+DMD TLIK+KSG  F   + DWQ+  P +   LK+ H  G+K+ + +NQ G+GKGKV
Sbjct:  206 LHIYTSAGVVASEKVAAYDMDGTLIKTKSGNVFPKSIDDWQIAFPEVPGKLKSLHRNGFKLVIFTNQAGIGKGKV 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18683.4623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS6_ECTSI9.350e-2766.67Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A182J3G3_9DIPT1.820e-1647.44FHA_2 domain-containing protein n=1 Tax=Anopheles ... [more]
A0A182PGC7_9DIPT3.390e-1648.05FHA_2 domain-containing protein n=1 Tax=Anopheles ... [more]
A0A182MXB4_9DIPT6.310e-1646.15FHA_2 domain-containing protein n=1 Tax=Anopheles ... [more]
UPI00145558251.640e-1544.87uncharacterized protein LOC117289643 isoform X1 n=... [more]
A0A182QB07_9DIPT4.110e-1544.87FHA_2 domain-containing protein n=1 Tax=Anopheles ... [more]
A0A182YQ91_ANOST5.590e-1544.16FHA_2 domain-containing protein n=2 Tax=Anopheles ... [more]
A0A1S4H8L3_ANOGA7.680e-1544.74FHA_2 domain-containing protein n=10 Tax=gambiae s... [more]
A0A182FTM2_ANOAL1.090e-1445.33Phosphoinositide 5-phosphatase n=1 Tax=Anopheles a... [more]
A0A182T3N0_9DIPT1.380e-1444.00Uncharacterized protein n=1 Tax=Anopheles maculatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18683contigH-paniculata_contig18683:672..3048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog2880.D7FLS6
KEGG koko:K08073
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA-3'-diphospho-5'-guanosine diphosphatase
EggNOG OGsCOG0241@1,KOG2134@2759
EC2.7.1.78,3.1.3.32
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03400
Exons2
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.026022-CDS-H-paniculata_contig18683:671..8261622929441.026022-CDS-H-paniculata_contig18683:671..826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18683 672..826 -
1691480862.613174-CDS-H-paniculata_contig18683:671..8261691480862.613174-CDS-H-paniculata_contig18683:671..826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18683 672..826 -
1622929441.0411801-CDS-H-paniculata_contig18683:2945..30481622929441.0411801-CDS-H-paniculata_contig18683:2945..3048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18683 2946..3048 -
1691480862.6257272-CDS-H-paniculata_contig18683:2945..30481691480862.6257272-CDS-H-paniculata_contig18683:2945..3048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18683 2946..3048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18683.4623.1prot_H-paniculata_contig18683.4623.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18683 672..3048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18683.4623.1

>prot_H-paniculata_contig18683.4623.1 ID=prot_H-paniculata_contig18683.4623.1|Name=mRNA_H-paniculata_contig18683.4623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MGGSLLRFVPKGGCRVSTHIAAFDMDNTLIKSKSGKRFGDEVGDWQLVHP
NIVSALKAWHERGYKMAVISNQLGVGKGKVDKGKV*
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mRNA from alignment at H-paniculata_contig18683:672..3048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18683.4623.1 ID=mRNA_H-paniculata_contig18683.4623.1|Name=mRNA_H-paniculata_contig18683.4623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2377bp|location=Sequence derived from alignment at H-paniculata_contig18683:672..3048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGCTCTCTTCTGAGGTTCGTGCCCAAGGGAGGGTGCAGGGTTTC
CACGCATATTGCGGCGTTTGACATGGACAACACGCTCATCAAGAGCAAAT
CGGGTAAGGTGGGACGCTGGGTACTCCAAGTTGTACCCATACACGGCTAT
TGTGCATTGGCGCCGATAGCATCAAATACATGGATATTAAGTGATACATC
GTATCGTAGTGTTGAGTGAGGGGCATCGATATACCGTATCCACGGCGCCG
TCAAAACGCCCCGGGGGCGATGTCTGTTCAAGCCGGGTTTTTATTTTATT
TTATTGGCGGTGCTCGTAGTATATCGACATTTTCTGTCGTGTGGCAGGAT
CTCGTCGAGATGTGTCTGTCGCTGTCCTCTTCTAGAAAGTGCATGCAGTT
ATTTTGTGAGCCGTTATCGTATACGTAGTACCATGTATCTGTCATTATCC
ACTGTCTGTGTAGCTTTGCTGTGGTGTGGTGTGATGGTGGCCACAGCTGC
ACCATAAGCACGGCAGTGGGCGATGAAGGCAGGAAGCCTTCGGAACTCAC
AGTGCCGTGGTGGACCCGCGGATTGAGCTAGCTCGACTGCACGCGATCGT
GGCAAACTTGCACACATCCATAGACGAATGAGTTGTCTGAAATGTCCGAT
TACACGATGATACCCCGTAAGGCTCAAATCTCGACCCTCGATAAGGGTGT
AGCCGAAAGAAGAGATGGATCAGCTGTAATGTACCACATGATGCATGCAC
ACTGTCTAAAAGCGTTATATATATATATATATTCATAGAACCAAAGAACC
AGTCAAAAGGGGAGACTCGTGGTCGATTAGGGTTAACGAAGGGGTTGCAA
TAAGACAATATTTTTTAGTATCTCCGCAGGAGCTTGTCACCTATAGTTGG
GGCGCCAAGGGCAACAACTCTAGCAAACTGAAACAGAAAACGGGTCACAA
TAAAAAGCCTTCTTTTTTTTAGATCCTAGAGTTTATTGGGAGAGTGCTCT
CGACGAAATCGTCACGTGATTCACCATCCGATCTCGGACGTAAAACTAGA
ACGCATATGACACGGTTGCGGGGGGATAGGAGCCCGCCGTTGTTCAGACA
GGTATACTTCGGTACGGATAGAGAGTTGGCATGGGTTGAGAGTATAGCCG
ATTGCAGCAGCGGTCGACTTTTTTAGCATGATCAGCTTCATTTTTTTTTT
TTTTTGTTCCGCGAAAAATAAAATGTAAATAAATAAAAGGGATACCTATG
TCTTGTATTAATTGTTATTATTATTATTATTATTATTATTATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTATTATTATTATATAGGTCGTCACGGTTGTCAGTACTTTGTCAGGGAA
TCATCCTATGATAGGGGGGGGAGGATCAATTGCTTAACGAAGGGCCTTCC
TATACGTCGCGCAGCAAACGAATGTGTTGTTTCTGAACAGCAAATAATGT
GTAATGGCTTCCATTGTCCTCGTGTTTTGGTTGGTAGCCTGTTACCATCG
TTTCACATCACAGCCGCCGAATTAGCAAATGCTCCGCACTGTATTTTCGG
CGGTCCTCCAAACGAATTCGGTCGGCAAAACCGCTGAATTTCGTTTTGTT
CGTCAGCGCTTCGGTACGAAGGTACAAAAAACAAATGGGCGCAGGCAGCA
GCTCAGTGTCGACACTATTTAAATAAAGCCCCTGGCGAGAGGAAATGTTG
AACTATCCAGTATTTTTCTATTTTCGGAGTTCGTGGTTCGTGCCGTTGTT
TCGAAGTGTACTGCGACGACCGATGGGTTTTGTGTGTGTGTGCCACATGG
GGGGGGGGAGGGATTATATATTATTATTATTATTTTTTAACCCCCGGAAG
GCTGACGCAAAAACCTTTACCGATGCTTCCATACTCTGGTATTTCTACCG
AAGTATTTCTACGTTTCCTTTAACAGAACAGAGTTATTGATTCCTCTGCG
GGGTAGGCGCCACCCCGGTTCGGCTGAACCAGGTAGGCAGTATGGGGATT
GTTGCACCCACTAAAAGACCTCTGCCTAGACTTCCAGTCATGCTCAGTGC
ACGAGCTACCCTACCCGTTCGGGCGTAGGTCCGTGGGGGGTGGGGTTGTT
TATGGTTAAATAGAAATGCATACGACGTGTCTTGGTATGCACCTGATTTG
GTATTCGGTGTTGGTGAACCAGGGAAAAGATTTGGAGATGAAGTTGGAGA
CTGGCAGCTGGTGCACCCCAACATCGTATCTGCTTTGAAGGCATGGCACG
AGAGAGGGTACAAGATGGCCGTCATTTCCAACCAGCTTGGGGTCGGCAAG
GGTAAAGTTGACAAAGGGAAGGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18683:672..3048-

>mRNA_H-paniculata_contig18683.4623.1 ID=mRNA_H-paniculata_contig18683.4623.1|Name=mRNA_H-paniculata_contig18683.4623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig18683:672..3048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGCTCTCTTCTGAGGTTCGTGCCCAAGGGAGGGTGCAGGGTTTC
CACGCATATTGCGGCGTTTGACATGGACAACACGCTCATCAAGAGCAAAT
CGGATGGGCGGCTCTCTTCTGAGGTTCGTGCCCAAGGGAGGGTGCAGGGT
TTCCACGCATATTGCGGCGTTTGACATGGACAACACGCTCATCAAGAGCA
AATCGGGGAAAAGATTTGGAGATGAAGTTGGAGACTGGCAGCTGGTGCAC
CCCAACATCGTATCTGCTTTGAAGGCATGGCACGAGAGAGGGTACAAGAT
GGCCGTCATTTCCAACCAGCTTGGGGTCGGCAAGGGTAAAGTTGACAAAG
GGAAGGTATGAGGAAAAGATTTGGAGATGAAGTTGGAGACTGGCAGCTGG
TGCACCCCAACATCGTATCTGCTTTGAAGGCATGGCACGAGAGAGGGTAC
AAGATGGCCGTCATTTCCAACCAGCTTGGGGTCGGCAAGGGTAAAGTTGA
CAAAGGGAAGGTATGA
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