mRNA_H-paniculata_contig18678.4621.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18678.4621.1
Unique NamemRNA_H-paniculata_contig18678.4621.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18678.4621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18678contigH-paniculata_contig18678:4304..4883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18678.4621.1prot_H-paniculata_contig18678.4621.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18678 4421..4883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.745359-UTR-H-paniculata_contig18678:4303..44201622929440.745359-UTR-H-paniculata_contig18678:4303..4420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18678 4304..4420 +
1691480862.453329-UTR-H-paniculata_contig18678:4303..44201691480862.453329-UTR-H-paniculata_contig18678:4303..4420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18678 4304..4420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.7580261-CDS-H-paniculata_contig18678:4420..45651622929440.7580261-CDS-H-paniculata_contig18678:4420..4565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18678 4421..4565 +
1691480862.4654825-CDS-H-paniculata_contig18678:4420..45651691480862.4654825-CDS-H-paniculata_contig18678:4420..4565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18678 4421..4565 +
1622929440.7727287-CDS-H-paniculata_contig18678:4788..48831622929440.7727287-CDS-H-paniculata_contig18678:4788..4883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18678 4789..4883 +
1691480862.4739192-CDS-H-paniculata_contig18678:4788..48831691480862.4739192-CDS-H-paniculata_contig18678:4788..4883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18678 4789..4883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18678.4621.1

>prot_H-paniculata_contig18678.4621.1 ID=prot_H-paniculata_contig18678.4621.1|Name=mRNA_H-paniculata_contig18678.4621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MEVDFQSPTRLHLITVRVHVPTAPRPHLDHGRLSSKTGDLQAEPPSTQEA
LDCERRNGGAVWYTEEMQVVKKSLDDHTR*
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mRNA from alignment at H-paniculata_contig18678:4304..4883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18678.4621.1 ID=mRNA_H-paniculata_contig18678.4621.1|Name=mRNA_H-paniculata_contig18678.4621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=580bp|location=Sequence derived from alignment at H-paniculata_contig18678:4304..4883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAGCGCTAAATAGGGTCCTATAATATAGCGAAAACAAATTTCAACCAC
ACGGAATTGATACCCAGATCCGTGCAGCTATAAAAAGTGACCCCACCATC
GCACTTTTTGTGGTAATATGGAGGTAGATTTCCAGTCGCCCACTCGCCTG
CACTTGATCACAGTGCGCGTGCATGTTCCCACTGCTCCACGTCCCCACCT
CGACCACGGCCGTCTCAGCAGTAAAACTGGAGACCTACAGGCCGAGCCGC
CATCCACTCAAGGTATGAAGCGTTGTGCACAACTGTTGGTGTCGCTTCGA
CGCCAAGCATCACTGTTGTTGACCTATCTCGTCGTTTGTTATGGATGTAC
AGCACTGATGGCTCGTGGAAATGGATAGCAATGTTGTTGTGGCTGTGTAG
AGCGACAATTTTCAAATTCATTCGTTTGTTGGCCGTGATCGTGCTGCTGC
CTGGCTGTTCTTGTCCCTGTTACCCTAACTCTAAGAGGCTCTTGACTGTG
AGCGAAGGAATGGCGGAGCAGTCTGGTACACAGAGGAGATGCAAGTAGTG
AAGAAGTCGCTTGACGATCATACGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18678:4304..4883+

>mRNA_H-paniculata_contig18678.4621.1 ID=mRNA_H-paniculata_contig18678.4621.1|Name=mRNA_H-paniculata_contig18678.4621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig18678:4304..4883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTAGATTTCCAGTCGCCCACTCGCCTGCACTTGATCACAGTGCG
CGTGCATGTTCCCACTGCTCCACGTCCCCACCTCGACCACGGCCGTCTCA
GCAGTAAAACTGGAGACCTACAGGCCGAGCCGCCATCCACTCAAGATGGA
GGTAGATTTCCAGTCGCCCACTCGCCTGCACTTGATCACAGTGCGCGTGC
ATGTTCCCACTGCTCCACGTCCCCACCTCGACCACGGCCGTCTCAGCAGT
AAAACTGGAGACCTACAGGCCGAGCCGCCATCCACTCAAGAGGCTCTTGA
CTGTGAGCGAAGGAATGGCGGAGCAGTCTGGTACACAGAGGAGATGCAAG
TAGTGAAGAAGTCGCTTGACGATCATACGAGGTAAAGGCTCTTGACTGTG
AGCGAAGGAATGGCGGAGCAGTCTGGTACACAGAGGAGATGCAAGTAGTG
AAGAAGTCGCTTGACGATCATACGAGGTAA
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