mRNA_H-paniculata_contig1863.4607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1863.4607.1 vs. uniprot
Match: D7FJH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH6_ECTSI) HSP 1 Score: 108 bits (269), Expect = 3.550e-24 Identity = 58/116 (50.00%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 787 VPSSERVQMVIIRTAEKTVQVPGFEAFLKLQHGQDALFSFLGSNHELHSYYLMAKDHSQQAVLNGKQAREAGAPKAASSLSSSSPASSRSPPRSASLSKPIDPEVEEIVNLLGGGG 1134
VP + ++Q+VI TAEKT++VPGFEAF+K+QHG+DALF FL ++H LHSYYL+AK H Q+ V+ G +A+ A A++ SS+PA++ P K DP+V EI+ +LGG G
Sbjct: 3 VPPTRKIQLVIAHTAEKTIEVPGFEAFMKMQHGRDALFRFLAADHALHSYYLLAKKHVQEIVMKGGKAKGA----CAAAEPSSAPAATLKAPSD----KTEDPDVAEIMRMLGGVG 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1863.4607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1863.4607.1 >prot_H-paniculata_contig1863.4607.1 ID=prot_H-paniculata_contig1863.4607.1|Name=mRNA_H-paniculata_contig1863.4607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp MPVDSSRSKGGAFSQADRSNFVEAVLSRNLIPDRTQVVYYFAGTIGKDVIback to top mRNA from alignment at H-paniculata_contig1863:7164..23207- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1863.4607.1 ID=mRNA_H-paniculata_contig1863.4607.1|Name=mRNA_H-paniculata_contig1863.4607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16044bp|location=Sequence derived from alignment at H-paniculata_contig1863:7164..23207- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1863:7164..23207- >mRNA_H-paniculata_contig1863.4607.1 ID=mRNA_H-paniculata_contig1863.4607.1|Name=mRNA_H-paniculata_contig1863.4607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at H-paniculata_contig1863:7164..23207- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |