mRNA_H-paniculata_contig1862.4604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1862.4604.1
Unique NamemRNA_H-paniculata_contig1862.4604.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: D7FXY3_ECTSI (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY3_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 8.590e-102
Identity = 171/237 (72.15%), Postives = 188/237 (79.32%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXR------------------PFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
            A+GPARPTGGCGAVAVLVGP+APLV+N KTRASYACDVWDFFKPDMSSEYP+VNGQLSQ CYLRALDSCY++L+ KK  XXXXXXX                   PFVL DV+HVLCHSPYNKLVQKSFAR+AFSDARRL+  G PL            ++  +ETYDDR+LEKALK+FAGV S  YR  VEPGCRLSKQIGNTYTASVFANIVCLV A G++LEGETALVFSYGSG
Sbjct:  166 AEGPARPTGGCGAVAVLVGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAXXXXXXXXXXXXXXXXXXEGGGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSGAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSG 402          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A836C9U2_9STRA (Hydroxymethylglutaryl-coenzyme A synthase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9U2_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.420e-72
Identity = 128/221 (57.92%), Postives = 155/221 (70.14%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXR--PFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
            A+GPARPTGGCGAVAVL+GP+APL VN   R ++ACDVWDFFKPDMSSEYP+V+G LSQ CYLRA+D CY + + KK +          P+  E   H L HSPYNKLVQKS+ARL F+DARR   AG PL   L +P     +   ++TY+D +L  ALK   GV +  Y+  V PGC LS++IGNTYTASVFANI CLVD  G++L+G    VFSYGSG
Sbjct:  168 AEGPARPTGGCGAVAVLIGPDAPLAVNACARTTHACDVWDFFKPDMSSEYPRVDGALSQSCYLRAIDDCYSRFADKKERSTDAAAATAAPYTAESADHFLFHSPYNKLVQKSYARLFFTDARRCSAAGRPLPPHL-APLEPWLDAPLEDTYNDVKLAAALK---GVAAAAYKARVAPGCVLSQRIGNTYTASVFANIACLVDREGAALDGARVAVFSYGSG 384          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: M4BVN1_HYAAE (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN1_HYAAE)

HSP 1 Score: 197 bits (502), Expect = 2.840e-56
Identity = 107/220 (48.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSL-EGETALVFSYGSG 657
            AKGPARP+GGCGAVA+LVGP+AP+V++ KT+A++A +VWDF+KP MSSEYP V+GQLS  CYL ALD CY  L  KK K           +  V + + HSPY+KLVQKSFARL F D+RRL  +G        +      +    ET +DREL+   +    V  E +R  V P C  S+Q+GN+YTA+V+ N+  LV      L +G   L+FSYGSG
Sbjct:  155 AKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTVDGQLSNACYLHALDECY-LLFCKKSKSLAAVDQEEIGVASVDYAVFHSPYHKLVQKSFARLGFLDSRRLMSSGDEAAKEKYASLRKWADAPLHETLNDRELDLVARD---VAREDFRVKVSPSCTTSQQLGNSYTAAVYMNLATLVYVRAKELAQGARVLLFSYGSG 370          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: D0NKN5_PHYIT (Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytophthora TaxID=4783 RepID=D0NKN5_PHYIT)

HSP 1 Score: 199 bits (506), Expect = 1.030e-55
Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLE-GETALVFSYGSG 657
            AKGPARP+GGCGAVA+L+GP+AP+V++ +T++++A +VWDF+KP++SSEYP V+G+LS  CYL ALD CY    KK           P V   V + + HSPYNKLVQKSFARL F D+RRL            +P A        ET +DREL+ A +   GV  E ++  V P C  S+Q+GN YTA+V+ N+  LV A    L  G   L+FSYGSG
Sbjct:  155 AKGPARPSGGCGAVAMLIGPDAPMVLDCRTKSTHATNVWDFYKPNVSSEYPTVDGKLSNSCYLHALDECYQLFCKKSEAAVKVDGDEPGVAS-VDYAVFHSPYNKLVQKSFARLLFLDSRRLLHTEDEAAKEKFAPLAKWVHTPLDETLNDRELDLAAR---GVAKEDFQTKVSPSCTTSQQLGNCYTAAVYMNLATLVHARAKDLALGSRVLMFSYGSG 370          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A482SR24_9ARCH (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SR24_9ARCH)

HSP 1 Score: 193 bits (490), Expect = 3.000e-55
Identity = 101/219 (46.12%), Postives = 134/219 (61.19%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
            A GPARPTGGCG+VA+L+G NAP+ ++ +TR   A  VWDFFKP++ SEYP VNG LSQ CYL++LD CY +  +K  +                ++L HSPYNKLVQKSF RL + D    +   SP+   L  P           TY+D++LE ALK  +  G   Y+  V  GC +S++IGNTYTASV+ N+  LV   G+ L G+  ++FSYGSG
Sbjct:  183 ADGPARPTGGCGSVAMLIGRNAPISIDLRTRTCSASHVWDFFKPNLHSEYPTVNGALSQTCYLQSLDDCYTRFLEKSQRIRQTD----MTASSADYILFHSPYNKLVQKSFGRLLYHDMLSKKVDASPITPWLNKPI--------HTTYEDKDLETALKEVSKAG---YKSKVSLGCEISQRIGNTYTASVYMNLAHLVSNLGNQLIGKKTMLFSYGSG 386          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A4D9DA31_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA31_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.500e-55
Identity = 104/221 (47.06%), Postives = 149/221 (67.42%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARR--LRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
            A GPA+PTGGCGAVA+LVGP+APLV++ + RA++A + WDFFKP  +SEYP+V+G++S+ CYL+ALD CY + + K+ +       +PF  + + +   H PYNKLVQK+F RL F DARR  L+KA         S    ++  + +ETYDDR+LE  L+   G+  + + + V P C +S Q+GNTYTASV+ N+VCL+     +L G+  LV+S+GSG
Sbjct:  279 ADGPAKPTGGCGAVALLVGPDAPLVIDPQLRATHASNTWDFFKPKFASEYPEVDGKMSKDCYLKALDDCYMRFAGKQEEAFG----KPFKADAIDYFCFHHPYNKLVQKAFGRLFFMDARRGKLKKAEG-----WESLDPWISNSL-EETYDDRDLETLLR---GLSHDRFSKRVAPSCLVSMQVGNTYTASVYMNLVCLIAQKAEALVGKRILVYSFGSG 486          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: M4BVN2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN2_HYAAE)

HSP 1 Score: 197 bits (502), Expect = 7.610e-55
Identity = 107/220 (48.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSL-EGETALVFSYGSG 657
            AKGPARP+GGCGAVA+LVGP+AP+V++ KT+A++A +VWDF+KP MSSEYP V+GQLS  CYL ALD CY  L  KK K           +  V + + HSPY+KLVQKSFARL F D+RRL  +G        +      +    ET +DREL+   +    V  E +R  V P C  S+Q+GN+YTA+V+ N+  LV      L +G   L+FSYGSG
Sbjct:  155 AKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTVDGQLSNACYLHALDECY-LLFCKKSKSLAAVDQEEIGVASVDYAVFHSPYHKLVQKSFARLGFLDSRRLMSSGDEAAKEKYASLRKWADAPLHETLNDRELDLVARD---VAREDFRVKVSPSCTTSQQLGNSYTAAVYMNLATLVYVRAKELAQGARVLLFSYGSG 370          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A024TPQ8_9STRA (Hydroxymethylglutaryl-CoA synthase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TPQ8_9STRA)

HSP 1 Score: 196 bits (498), Expect = 3.420e-54
Identity = 106/219 (48.40%), Postives = 134/219 (61.19%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
            AKGPARPT GCGAVA+L+GPNAPLV+  + R +++ ++WDF+KPD  SEYP V+G+ SQ CYL+ LD CY +   K          + F +    +VL HSPYNKL QK FAR+ F+D   LR    P    L        E    ETY DRELE A +    V    + RMVEP C  S+ IGN YTASV+ N+ CLVD   S+L G+  ++FSYGSG
Sbjct:  240 AKGPARPTSGCGAVAMLIGPNAPLVMESELRTTFSENMWDFYKPDPHSEYPTVDGKFSQSCYLKTLDDCYRRFCSKNELAGVTKNGQFFDVAANDYVLFHSPYNKLAQKGFARIVFNDF--LRNPTLPQYEKLKKWHGAALE----ETYYDRELEAASRE---VSLNMWNRMVEPSCFASRHIGNCYTASVYINLACLVDTARSALHGKRLMLFSYGSG 449          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A7J7MZP9_9MAGN (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MZP9_9MAGN)

HSP 1 Score: 189 bits (481), Expect = 3.490e-54
Identity = 105/219 (47.95%), Postives = 140/219 (63.93%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
            A+GPARPTGG  A+A+L+GP+AP+V   K RAS+   V+DF+KPD++SEYP V+G+LSQ CYL ALDSCY  L  K  K       +PF + D  +++ HSPYNKLVQKSFARL F D   LR A S +  +     A  + +   E+Y  R+LEK  +    V    Y   V+P   L KQ+GN YTAS++A +V L+    ++LEG+  L+FSYGSG
Sbjct:  181 AEGPARPTGGAAAIAMLIGPDAPIVFESKIRASHMSHVYDFYKPDLASEYPVVDGKLSQTCYLTALDSCYKLLCAKFEKLNG----KPFSISDADYIVFHSPYNKLVQKSFARLCFMDF--LRNASS-IDESAKEKLAPFSALTGDESYASRDLEKVSQQ---VAKPLYDLKVQPTTLLPKQVGNMYTASLYAALVSLIHNKTTTLEGKRVLMFSYGSG 389          
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A251VID0_HELAN (Hydroxymethylglutaryl-CoA synthase n=14 Tax=Asteraceae TaxID=4210 RepID=A0A251VID0_HELAN)

HSP 1 Score: 188 bits (478), Expect = 4.270e-54
Identity = 102/219 (46.58%), Postives = 140/219 (63.93%), Query Frame = 1
Query:    1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
            A+GPARPTGG  A+A+L+GP+AP+    K RAS+   V+DF+KPD++SEYP V+G+LSQ CYL ALDSCY+    K  K       + F + D  + + HSPYNKLVQKSFARL FSD   +R A S +  ++       T +   E+Y +R+LEKA +  A      Y + V+PG  ++KQ+GN YTAS++A    L+    SSL+G   ++FSYGSG
Sbjct:  153 AEGPARPTGGAAAIAMLIGPDAPIAFESKFRASHMSHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNGYCHKYEKLEG----KQFSIVDADYFVFHSPYNKLVQKSFARLVFSDV--VRNASS-VDESVKEKLGQFTPLTGDESYQNRDLEKASQQAA---KSYYDKKVQPGTLINKQVGNMYTASIYAAFASLIHNKYSSLDGNRVMMFSYGSG 361          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXY3_ECTSI8.590e-10272.15Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocar... [more]
A0A836C9U2_9STRA2.420e-7257.92Hydroxymethylglutaryl-coenzyme A synthase N termin... [more]
M4BVN1_HYAAE2.840e-5648.64Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyalope... [more]
D0NKN5_PHYIT1.030e-5548.18Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytop... [more]
A0A482SR24_9ARCH3.000e-5546.12Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 ... [more]
A0A4D9DA31_9STRA3.500e-5547.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
M4BVN2_HYAAE7.610e-5548.64Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A024TPQ8_9STRA3.420e-5448.40Hydroxymethylglutaryl-CoA synthase n=5 Tax=Aphanom... [more]
A0A7J7MZP9_9MAGN3.490e-5447.95Hydroxymethylglutaryl-CoA synthase n=1 Tax=Kingdon... [more]
A0A251VID0_HELAN4.270e-5446.58Hydroxymethylglutaryl-CoA synthase n=14 Tax=Astera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1862contigH-paniculata_contig1862:263..1700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue8.2e-85
Seed eggNOG ortholog2880.D7FXY3
KEGG rclassRC00004,RC00503
KEGG koko:K01641
KEGG ReactionR01978
KEGG Pathwayko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG ModuleM00088,M00095
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydroxymethylglutaryl-CoA synthase activity
EggNOG OGsCOG3425@1,KOG1393@2759
EC2.3.3.10
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size660
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1862.4604.1prot_H-paniculata_contig1862.4604.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1862 263..1700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929438.5181046-CDS-H-paniculata_contig1862:262..5351622929438.5181046-CDS-H-paniculata_contig1862:262..535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 263..535 -
1691480861.5515032-CDS-H-paniculata_contig1862:262..5351691480861.5515032-CDS-H-paniculata_contig1862:262..535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 263..535 -
1622929438.5323484-CDS-H-paniculata_contig1862:656..8871622929438.5323484-CDS-H-paniculata_contig1862:656..887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 657..887 -
1691480861.5688848-CDS-H-paniculata_contig1862:656..8871691480861.5688848-CDS-H-paniculata_contig1862:656..887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 657..887 -
1622929438.5474782-CDS-H-paniculata_contig1862:1544..17001622929438.5474782-CDS-H-paniculata_contig1862:1544..1700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 1545..1700 -
1691480861.5783098-CDS-H-paniculata_contig1862:1544..17001691480861.5783098-CDS-H-paniculata_contig1862:1544..1700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 1545..1700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1862.4604.1

>prot_H-paniculata_contig1862.4604.1 ID=prot_H-paniculata_contig1862.4604.1|Name=mRNA_H-paniculata_contig1862.4604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEY
PQVNGQLSQMCYLRALDSCYDKLSKKKLKQQQQQQQRPFVLEDVQHVLCH
SPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYD
DRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVD
AHGSSLEGETALVFSYGSG*
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mRNA from alignment at H-paniculata_contig1862:263..1700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1862.4604.1 ID=mRNA_H-paniculata_contig1862.4604.1|Name=mRNA_H-paniculata_contig1862.4604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1438bp|location=Sequence derived from alignment at H-paniculata_contig1862:263..1700- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAGGGACCTGCGAGACCCACCGGGGGATGCGGAGCTGTGGCAGTGCT GGTCGGTCCTAACGCACCGCTGGTGGTGAACCAGAAGACCCGCGCGTCGT ACGCGTGCGACGTTTGGGACTTTTTCAAGCCGGACATGTCTTCCGAGTAT CCTCAGGTGATGATAGCGTAATAGGTATGCAGGTTGCACCTGTGCACGGT GCACGGTTCAGAGGTATCGTTTTTTCGCTCGGCGCGTCCTTCGGCAGGTC AAGTAGCTAAACCTGCTTTCTGTGCCTTTTGCTGGGTGCCTTTTGGATGA TGAAATATTTTGTCACCGTCCGACCGATTGGCTTCGTTCACCCCCCCCCC CCTCCCTCCATGCCATATCTTTCGTGTGCCGTGCTGTTTTGTTGCCGGGT TATACCATCATCCCGAGAATACTAATGGCTAATGTTCTATTATACATGAT ATTATCAGGTTTGGACTTACCTTATTACAGTCCGTCCGGAGCATTTTCAT TACCATGATATTTCTTGTTCGTTATTCTTATTTTTCGAGGACCAGCAGAG ATGAAAAAAAACAAAAAAAAATTGGCCTACATATTGGAGCTGCACTCTTT CATTAATTACCACAGTCCTTTCCGGCATCAACTTACGGAAGATAAATATA TTCGCAGGGTGGCAGTCTCAACTGACCTACTACCCCCGCTCCTTGATACC CACACAAGCGACCTGCTGACTGCGCCCTTGGAATCTGACGTTGCACACGG ATTTAAAGGAAACGTAACGCACACCGCCGCCGCCTCCAATGCATATCTGT ATGCCGTCACCAGGTGAACGGACAACTGTCGCAGATGTGCTACCTGCGCG CTCTGGACAGTTGCTACGATAAGCTGTCCAAGAAAAAACTCAAGCAGCAG CAGCAGCAGCAGCAGCGACCATTTGTGCTGGAGGACGTGCAGCACGTGCT GTGCCACTCTCCGTACAACAAGCTGGTGCAGAAATCGTTTGCGCGACTGG CCTTCTCCGACGCGCGGCGCCTGCGTAAGGCTGGGAGCCCGTTGGTAGGC GGGGAGGCCCAGGAAGAGGCATTGGGCAAGTGGCTCGATGTTCCCGCCGA GGTACGTCATTTTTGACGACTGCGCGCTTGCATTTCCTGGTGTTTTATTA CTGTCTGCGTATGAGTGTCACACTTTACCCTCTCCTTGCGCTTGTGTAAC TGAAATAATCCCTCAGGAGACATACGATGACCGCGAGCTGGAAAAAGCCC TGAAGAGCTTCGCGGGGGTGGGTTCCGAGCCTTACCGCAGGATGGTCGAG CCGGGGTGCCGGTTGAGCAAGCAAATTGGGAACACGTACACTGCGTCTGT TTTCGCAAACATCGTGTGTTTGGTGGACGCGCACGGGTCCAGCCTGGAGG GGGAGACGGCACTTGTTTTTTCCTACGGATCGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1862:263..1700-

>mRNA_H-paniculata_contig1862.4604.1 ID=mRNA_H-paniculata_contig1862.4604.1|Name=mRNA_H-paniculata_contig1862.4604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig1862:263..1700- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAGGGACCTGCGAGACCCACCGGGGGATGCGGAGCTGTGGCAGTGCT
GGTCGGTCCTAACGCACCGCTGGTGGTGAACCAGAAGACCCGCGCGTCGT
ACGCGTGCGACGTTTGGGACTTTTTCAAGCCGGACATGTCTTCCGAGTAT
CCTCAGGCGAAGGGACCTGCGAGACCCACCGGGGGATGCGGAGCTGTGGC
AGTGCTGGTCGGTCCTAACGCACCGCTGGTGGTGAACCAGAAGACCCGCG
CGTCGTACGCGTGCGACGTTTGGGACTTTTTCAAGCCGGACATGTCTTCC
GAGTATCCTCAGGTGAACGGACAACTGTCGCAGATGTGCTACCTGCGCGC
TCTGGACAGTTGCTACGATAAGCTGTCCAAGAAAAAACTCAAGCAGCAGC
AGCAGCAGCAGCAGCGACCATTTGTGCTGGAGGACGTGCAGCACGTGCTG
TGCCACTCTCCGTACAACAAGCTGGTGCAGAAATCGTTTGCGCGACTGGC
CTTCTCCGACGCGCGGCGCCTGCGTAAGGCTGGGAGCCCGTTGGTGAACG
GACAACTGTCGCAGATGTGCTACCTGCGCGCTCTGGACAGTTGCTACGAT
AAGCTGTCCAAGAAAAAACTCAAGCAGCAGCAGCAGCAGCAGCAGCGACC
ATTTGTGCTGGAGGACGTGCAGCACGTGCTGTGCCACTCTCCGTACAACA
AGCTGGTGCAGAAATCGTTTGCGCGACTGGCCTTCTCCGACGCGCGGCGC
CTGCGTAAGGCTGGGAGCCCGTTGTGTCACACTTTACCCTCTCCTTGCGC
TTGTGTAACTGAAATAATCCCTCAGGAGACATACGATGACCGCGAGCTGG
AAAAAGCCCTGAAGAGCTTCGCGGGGGTGGGTTCCGAGCCTTACCGCAGG
ATGGTCGAGCCGGGGTGCCGGTTGAGCAAGCAAATTGGGAACACGTACAC
TGCGTCTGTTTTCGCAAACATCGTGTGTTTGGTGGACGCGCACGGGTCCA
GCCTGGAGGGGGAGACGGCACTTGTTTTTTCCTACGGATCGGGGTGATGT
CACACTTTACCCTCTCCTTGCGCTTGTGTAACTGAAATAATCCCTCAGGA
GACATACGATGACCGCGAGCTGGAAAAAGCCCTGAAGAGCTTCGCGGGGG
TGGGTTCCGAGCCTTACCGCAGGATGGTCGAGCCGGGGTGCCGGTTGAGC
AAGCAAATTGGGAACACGTACACTGCGTCTGTTTTCGCAAACATCGTGTG
TTTGGTGGACGCGCACGGGTCCAGCCTGGAGGGGGAGACGGCACTTGTTT
TTTCCTACGGATCGGGGTGA
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