mRNA_H-paniculata_contig1861.4601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1861.4601.1
Unique NamemRNA_H-paniculata_contig1861.4601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1861.4601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1861contigH-paniculata_contig1861:20810..21702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size893
Cds size546
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929438.0093946-CDS-H-paniculata_contig1861:20809..213551622929438.0093946-CDS-H-paniculata_contig1861:20809..21355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 20810..21355 +
1691480861.2939885-CDS-H-paniculata_contig1861:20809..213551691480861.2939885-CDS-H-paniculata_contig1861:20809..21355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 20810..21355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929438.025603-UTR-H-paniculata_contig1861:21355..217021622929438.025603-UTR-H-paniculata_contig1861:21355..21702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1861 21356..21702 +
1691480861.3029542-UTR-H-paniculata_contig1861:21355..217021691480861.3029542-UTR-H-paniculata_contig1861:21355..21702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1861 21356..21702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1861.4601.1prot_H-paniculata_contig1861.4601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1861 20810..21355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1861.4601.1

>prot_H-paniculata_contig1861.4601.1 ID=prot_H-paniculata_contig1861.4601.1|Name=mRNA_H-paniculata_contig1861.4601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
QRLSSPGCLPGAQSTGYLQHSQATLINNNQANQPVSLSPRSPGESRNSSS
SSAGIHNVQPRALRQILAPTPPPARIFQPIALSTPPPVLQPPRMAATTFP
PVCNDQSSSQVSPSAAPEQQAIDDSEQCRHVTTEFQDAQKRLREHQVAVT
AAAQAVAQAAAQAAAGEQELSAAEASHAEKK*
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mRNA from alignment at H-paniculata_contig1861:20810..21702+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1861.4601.1 ID=mRNA_H-paniculata_contig1861.4601.1|Name=mRNA_H-paniculata_contig1861.4601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=893bp|location=Sequence derived from alignment at H-paniculata_contig1861:20810..21702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGGCTGTCTTCCCCAGGATGCCTTCCGGGGGCGCAGTCTACGGGGTA
CCTGCAACACTCTCAGGCAACCCTCATCAACAACAATCAGGCGAACCAAC
CCGTCTCCTTATCGCCAAGATCACCGGGAGAAAGCAGGAATTCTTCATCC
TCATCAGCGGGCATCCACAACGTGCAACCTCGTGCCCTACGACAAATCCT
GGCACCAACTCCCCCTCCCGCCAGAATATTTCAACCGATCGCCCTCTCAA
CCCCTCCGCCCGTACTTCAACCACCGCGAATGGCGGCCACTACTTTCCCG
CCAGTCTGCAATGACCAATCTTCCTCACAGGTCTCGCCCTCCGCAGCCCC
CGAACAGCAGGCCATAGACGACTCAGAGCAATGCCGTCATGTGACAACTG
AATTCCAGGACGCGCAGAAACGGCTGCGGGAGCACCAAGTAGCTGTAACG
GCGGCGGCCCAGGCAGTTGCCCAGGCCGCTGCACAAGCTGCGGCGGGGGA
ACAAGAACTTTCCGCAGCGGAAGCGTCCCACGCGGAGAAGAAATAGGCGC
CACGGATCGCGGAGGAGAAGCTGGCGGTGCAGCGGCAACAACAGGAGCGG
GCGGCTATGCAGGCGCAGTGCCAGCAAGGGGGAGCGCACCCTCCGTAGCA
CGCCTCGCCGCTCAAATGCAGCAACTGCGAACCCAGCAAGAGGCGTTCGC
TACTCAATTGCGAACCCAGCAAGAAGCGTCCACGGCTCATATACCCAATT
TGCAACACAGGGTCCAGTGTTAGGAGGAGCTCATCCTTAACTCCCACGAC
GCCCAAACCTCATAACGATGAACTCGAACAACGGAGCCAGACCGGGCGGG
AATGCTGGTTTGGAGGGACACATGGGGGCGGGCACTGGGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1861:20810..21702+

>mRNA_H-paniculata_contig1861.4601.1 ID=mRNA_H-paniculata_contig1861.4601.1|Name=mRNA_H-paniculata_contig1861.4601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig1861:20810..21702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGGCTGTCTTCCCCAGGATGCCTTCCGGGGGCGCAGTCTACGGGGTA
CCTGCAACACTCTCAGGCAACCCTCATCAACAACAATCAGGCGAACCAAC
CCGTCTCCTTATCGCCAAGATCACCGGGAGAAAGCAGGAATTCTTCATCC
TCATCAGCGGGCATCCACAACGTGCAACCTCGTGCCCTACGACAAATCCT
GGCACCAACTCCCCCTCCCGCCAGAATATTTCAACCGATCGCCCTCTCAA
CCCCTCCGCCCGTACTTCAACCACCGCGAATGGCGGCCACTACTTTCCCG
CCAGTCTGCAATGACCAATCTTCCTCACAGGTCTCGCCCTCCGCAGCCCC
CGAACAGCAGGCCATAGACGACTCAGAGCAATGCCGTCATGTGACAACTG
AATTCCAGGACGCGCAGAAACGGCTGCGGGAGCACCAAGTAGCTGTAACG
GCGGCGGCCCAGGCAGTTGCCCAGGCCGCTGCACAAGCTGCGGCGGGGGA
ACAAGAACTTTCCGCAGCGGAAGCGTCCCACGCGGAGAAGAAATAGCAGC
GGCTGTCTTCCCCAGGATGCCTTCCGGGGGCGCAGTCTACGGGGTACCTG
CAACACTCTCAGGCAACCCTCATCAACAACAATCAGGCGAACCAACCCGT
CTCCTTATCGCCAAGATCACCGGGAGAAAGCAGGAATTCTTCATCCTCAT
CAGCGGGCATCCACAACGTGCAACCTCGTGCCCTACGACAAATCCTGGCA
CCAACTCCCCCTCCCGCCAGAATATTTCAACCGATCGCCCTCTCAACCCC
TCCGCCCGTACTTCAACCACCGCGAATGGCGGCCACTACTTTCCCGCCAG
TCTGCAATGACCAATCTTCCTCACAGGTCTCGCCCTCCGCAGCCCCCGAA
CAGCAGGCCATAGACGACTCAGAGCAATGCCGTCATGTGACAACTGAATT
CCAGGACGCGCAGAAACGGCTGCGGGAGCACCAAGTAGCTGTAACGGCGG
CGGCCCAGGCAGTTGCCCAGGCCGCTGCACAAGCTGCGGCGGGGGAACAA
GAACTTTCCGCAGCGGAAGCGTCCCACGCGGAGAAGAAATAG
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