mRNA_H-paniculata_contig1861.4599.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1861.4599.1
Unique NamemRNA_H-paniculata_contig1861.4599.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1861.4599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1861contigH-paniculata_contig1861:1025..6037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size371
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1861.4599.1prot_H-paniculata_contig1861.4599.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1861 1025..6037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.9366848-CDS-H-paniculata_contig1861:1024..11591622929437.9366848-CDS-H-paniculata_contig1861:1024..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 1025..1159 +
1691480861.2681322-CDS-H-paniculata_contig1861:1024..11591691480861.2681322-CDS-H-paniculata_contig1861:1024..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 1025..1159 +
1622929437.9569898-CDS-H-paniculata_contig1861:1438..15661622929437.9569898-CDS-H-paniculata_contig1861:1438..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 1439..1566 +
1691480861.2776642-CDS-H-paniculata_contig1861:1438..15661691480861.2776642-CDS-H-paniculata_contig1861:1438..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 1439..1566 +
1622929437.9691014-CDS-H-paniculata_contig1861:5931..60371622929437.9691014-CDS-H-paniculata_contig1861:5931..6037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 5932..6037 +
1691480861.2859693-CDS-H-paniculata_contig1861:5931..60371691480861.2859693-CDS-H-paniculata_contig1861:5931..6037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1861 5932..6037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1861.4599.1

>prot_H-paniculata_contig1861.4599.1 ID=prot_H-paniculata_contig1861.4599.1|Name=mRNA_H-paniculata_contig1861.4599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
NLSLRGPSQQAALVQQQQTFVSRLTASLPGNTGRRAACISFSSRRLDGPC
PTIWRRDSSASNSKSRRANSLARGCPARLSRSQRPPKRCAVEPAARSERS
EQPSMSSTRDWRNLRGKHRRVG*
back to top

mRNA from alignment at H-paniculata_contig1861:1025..6037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1861.4599.1 ID=mRNA_H-paniculata_contig1861.4599.1|Name=mRNA_H-paniculata_contig1861.4599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5013bp|location=Sequence derived from alignment at H-paniculata_contig1861:1025..6037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTCTCTCTGAGAGGGCCTAGCCAGCAGGCTGCCCTGGTTCAGCAGCA
GCAGACCTTTGTGTCGCGTCTAACTGCGTCACTGCCTGGAAACACGGGGA
GACGGGCGGCATGCATTTCTTTCTCAAGCCGGAGGGTAAGGAGGATGTGT
AGTCGGCGTCCTGTAGAGCGTTCTCTCGACCGCCCTGGATGAGTGGAATA
AGTCTAGGGTTCTATAGGTCGGCAGGAGAACTTTCCTCATTTGAGTTGAG
GCTAACGCACGTGTGTTCTTTGTTCTTCATGTGATGGCATTTCTTTGCTG
GATGAAGTGCTCCGTTTACTAATACCCCTGGGTTAGCTCTGCGAATTTAT
GCTCCCTTTGCTGCGCTGTACACTTATGCTTCTGTTTCCATCTATGTATG
ATGGCGACTTTCAGCTGGATGGGCCGTGTCCGACCATCTGGAGGAGAGAC
TCAAGCGCCTCCAACAGCAAGTCGAGGAGAGCAAACAGTCTTGCGAGGGG
TTGTCCGGCGAGGTTGAGTCGTTCACAAAGGCCACCAAAGAGGTACGTTA
ATTAAAGTCGCTAGTGCCGGAAATAAAACGGGTTGGCTGGAACAACAGTA
CAGTGCTACGTTGCTTTTTGCGTGTCATCTTCTGTACTGTGTTGGACCGC
ACCGCATTGGCCTCTACTGCAATGCACTCTGAGTTGTTGATTTAGGATGC
CGAACTTTGCTCTTAAAACACATACGCATTGATGATGTGTAAGTACAACA
ACTCTACTGCTGAAGTCAGTGCAAGTTGGGTTATGCCAGCAGGGTATGAT
GGCGTACTGAGGGCACGGACGGCAAAGCTTGAAGGCATGGTTACTGGCGG
CATACACTTGTACAGATTGCTGGTGCAACTGCAATACAGGTGCATAGACA
TGCCAGCAGTACTGCCAGTGGGGTGCAATTTACAGACAGGGTGAGTCTGT
ACAACGCTCGTTCATAGAGGACCATCCCGTACTCCCGCAGAACGGAATGT
GCATATACTCTATATACAACACACTTCGGCATAAGGAAAAGTCTTCGATC
TGGCCCAAGGTCTAACTAAAATACTTGATGGTGTGCTACACGTTTTGTAA
GTAGGAGGGTCATCACAGTTTGCGTGCATCTCATGTTTGTGTCTCTGGAG
CTGTCGCTTGTGGACCGTTTGCAAAATGTTCGTTGTGTCGAAGCGTGTGT
CGTCGGGTAAGACAACCCACTCGTTTCCACTGGACACGACCCTTTCCTCA
CTTTCAACCCCAGAAACATGTTGTCACAGCTATTATTTATTTTTTTATCC
GAACGTGAGGGAGGCCATTTCTTACGCGATGCGGTCGCGACTTGACACGC
ATTGTTCCGCCGCGTGCAACGTTCTAAGAAGCTTGTTATTAGAATTGACG
GGTGTTTAAGCGGACCAAATCTCGTCTATACATAAATGGTCTGATCTATA
TAAAAGGTGAACCGTGAGGTGTGTAAGACAGCACAGGTCGTCGCATATGT
TAGTGAACAAAATTGAGTATTCCAGGGTTGTGGATTGATTGGACAAACAA
TTAACGGGTATACTGACGCAAAGCGCGAGCAGCCGTCCCCCGGCTTCGCC
ACATTTCGTTGCCAGAGCCTGAAATTAAAAGCGTTTCGTCTCCATATCAC
TTCAAAATATTGTGAAAATAGTAGCCTTCAGCGTACGTGTTTTTGTGATG
TGATCCGAGCAAAACTGCAAGCATTTACAAGCTACGGTGCTTCATAGTTG
GCAGAAATGCAGGATTGATTTCACAGTAGTCGTAGTTCGAGCTGAACCGC
ATCGTCCTTGACTGCCGCGCCGAGGGGAGCTATTATTGGCGATGTCATCG
GACTGTTTGTTACTCGCAACACGGTACTACTTCGTGCTTCAGTAGTAAAA
TAAACAACCAACAGGCGATATTCGAGATTGGGGATTGAAGTTCCTTTGAA
TTTGAATGGAATACTTCGAAAATGGTGCAAGCGAACGGCCTTTTCCAGGG
AGAGTTTGTGTCCATCTCACTGCTATTTACTATCCACAATGAGTTTGGAA
ACCTTTTCATACCTTGATTCGTACGGAAAGTGCCTTTCGCTAGCGCCATT
TTCGAAGCATTCCATTGAAGTTCAATGAAACTTCAATCCCAACAAGAAGT
TGATCCCCAATCCCGAGTGTCGCCTGTTAACTGTGTTCCGCAAACCTGGC
GAAAATGCAAAATATCCAGTATATATCATAGTGTAATGATAGCACCGCTA
CATCATACGTATTGTAGAGCATGCGGTGGCTGTTGCGGCGGGCGTAGTTT
GGTGGCTGGTTCTTGCGGACCCTGTGTGGTTTAAGGTTCCTTTATAGGCC
CCGGGGTGTATGCGGTTCCTGTGGCTGCGCTGCTTTCAAGGCCGCCATCC
AGATCGCTCATGAAACCGTCGTTTTCCTCAGAATCGCTATGATCACCGTC
GCTAGTCGTGACGAAGTTCATGGCATGGCGTGGTTCGGTATTTGGCAAAA
GGGGGACTCTGTTTGGGTCGTACAGGAGGCTCCAGTGAATCGGTAACGGT
AATTATTGGGAGATAACTGGATAACTGGGGATCTTATCAGTCTCTGAAAT
TGACCAGGTAAACTGGCGCCAGTTCACAAGCATAAAATTGTGCGAAACAA
CACTGGATACTACGATGGATACTTGGGCACACTGCGTGCGTTCAGGTCTC
ACGTACAGTAAACGATACGTACTAGTGTTGGACCATGTGGAAAACTGGAT
ACGCCTTGTTATTTTGTTTTGCTTTATGGCGGTTCTCCAGGAGAGTGTCA
TATTCCAGTGCGTGCCGGCCTAGCGCGTAGTACTAACGCCACGCAAGAAT
TGGTGGCGTCAAACTTTGAAAACATGGTCCTGCAGCACGGAGCCAGCGAT
GCTTAACAGCGCCAGAGCGAATAATGGATGCCATGAGCGTGAAAATAGAG
TTCGAGGCCGAAACCACCTCGCTATTCACGAAACCGCCTCGTTCTTCACC
TGCGGAGATCTACTCCTTAGCAAACTTGAACCCCTAGAACTTGCGTCAAA
TGAAAATGATTAACCCTTGAACATACATGAAGAAAAGGTGACGAAAAGAA
CAATATTTCCCCAGGAAAACCAACGCCAAATTAATCGTTACGTTCTCAGT
CATGTTGTCATGGTTCAACCGCCACGACTTGTGGCAGGGTGCCTGCTGCT
GTATCTGTGGGTACTATCACCCGTAACAGCACGCCCACACACGCAACGGG
TATTGCTTGCTAGGGAACCTCTCCGCCTCTCTTTATTACTTTGCTGCTAG
TGCATTAATTATATTGCATGAATCGTACTCTATGCTTGTTTCGTCGCCGT
GCGTAACTCTCTGGCTGTAATATGTTGTTTATACTGTAATTCTGGCTGCC
ACCGCTCGATGTAGCCATTGTGCGGACTGCAGTCTATCAGCTATATTACC
CCCACGTCAAGCACACACGATTTTGCAGCTGAAGGAGCCAGCCCTGGACG
TACGGGAAGAGAGTCTAATTCAAAACCTATTTCTGAAACACGTCGTTGTG
TGGCTATACTATCTTCGCAGATGCTCGACATAGGGTCTGATCTCACCGGG
CCCATAACAATCGTGTACGTCGCAATTCGCTACCCGATCCCCTCCCATTC
CGAAAAGCACCTTCTCCCTCTTTTTGCGACACGGGACTGGGACATATCGC
GTGTCGTAATGCAGGCACCCAGGTGCAAGAGGGTTAACTCGTTCATCACC
AAAGTCCATCGCTGCCGCGCTCTTTCCAAGACATTTGGTCTAAACATGGG
AGTACCTCTATCTGACTCCTTTTGTCCGCATGCGTCTGGTTTTACCCGAC
CAGAGTTTACTGCCAGAGTGCTGCTCTCTCCCTATCTCATCAGTTGTTCG
TTGTGTGCGCCGCTGCCATGCACAAGACTAGTCTCTCGTCTGTTAAAATA
TGCTTCTTAACTCACTGCCACCGCTCAAACTACTGCATCGCAATTCTGTC
AGCTGTACCACTTTCACACAACATAGACTCAGCTGCATGCACTTATTTCG
GCCACGAGAGAACGGAGGATGATCGTTTTCCATATCGATTATGAATTAAT
ATTGTTGAACGAAATTCATTGTATCTGATATTGTGTTTACAGGCGGCTGT
AGGAGCTTCAAAAGCCATTCTAGACTCTCAACTTGGGTCATCTATCCAAT
CGTATATATCCCATAATGCTCCCTTGAGCTGGATTGTTGCCCTTCAGCTC
CCTACAGGCAGTGATGAAATGTGGGGTCACCGCGTTTTCAGATTGGAACG
AAAAATCCATTTGCCTCCTAGAGGCCGAGCGGTACAGTCATTTTCGTATT
ATTAAATGAACTTCTGAAAACAAGTCGCAAAAACAATTCATTATGGTCTT
CCCCTTCTAATTGTGCGTGTTGGTGTCTGAGCGTTAAAAAACTCCCAGAG
ATCTCGGCTGCGGGCGTCATACCATGATTTGTATCCCGTATTGCTTTCAA
GAGTGTGACTTATTCCACACACCATCGTAGAGGCGATCTAGTTTGATAAC
GATATAACGGATGTGCAGTGCTTTTCTCCTGGCATAAGAATTCCGCGTAC
ACAGACGGTCACGGAAGCTAGCCAAAAACAGCTGGGACATACGCGTTACT
CTTCATCTTGGTTCCCGTCCGTTTCATCACTACTACCTGAGGGATGACCA
CAATCGCTATGTTCAAGATACAAGAAGAACACATGCCACATCAGTCTGCG
TTGTTGTCCAAGCTAACTATCAATTTCTGCAAAGAGCTAGGAAGGCACAA
AATTAACATGTGCACGACTTGTAGCATCTCCAAACCCTCAAGATCCGTTC
ATTCATTCATGTACTTTTCTTTTTATTCCGCTGCTTGTCACGTTAACGGA
TCACCAGATGTGCCGTCGAGCCGGCCGCACGTTCGGAGCGTTCGGAGCAG
CCCTCGATGTCGAGTACGCGAGACTGGAGGAATCTAAGAGGGAAACATCG
TCGGGTGGGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1861:1025..6037+

>mRNA_H-paniculata_contig1861.4599.1 ID=mRNA_H-paniculata_contig1861.4599.1|Name=mRNA_H-paniculata_contig1861.4599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig1861:1025..6037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTCTCTCTGAGAGGGCCTAGCCAGCAGGCTGCCCTGGTTCAGCAGCA
GCAGACCTTTGTGTCGCGTCTAACTGCGTCACTGCCTGGAAACACGGGGA
GACGGGCGGCATGCATTTCTTTCTCAAGCCGGAGGAATCTCTCTCTGAGA
GGGCCTAGCCAGCAGGCTGCCCTGGTTCAGCAGCAGCAGACCTTTGTGTC
GCGTCTAACTGCGTCACTGCCTGGAAACACGGGGAGACGGGCGGCATGCA
TTTCTTTCTCAAGCCGGAGGCTGGATGGGCCGTGTCCGACCATCTGGAGG
AGAGACTCAAGCGCCTCCAACAGCAAGTCGAGGAGAGCAAACAGTCTTGC
GAGGGGTTGTCCGGCGAGGTTGAGTCGTTCACAAAGGCCACCAAAGAGCT
GGATGGGCCGTGTCCGACCATCTGGAGGAGAGACTCAAGCGCCTCCAACA
GCAAGTCGAGGAGAGCAAACAGTCTTGCGAGGGGTTGTCCGGCGAGGTTG
AGTCGTTCACAAAGGCCACCAAAGAGATGTGCCGTCGAGCCGGCCGCACG
TTCGGAGCGTTCGGAGCAGCCCTCGATGTCGAGTACGCGAGACTGGAGGA
ATCTAAGAGGGAAACATCGTCGGGTGGGGTAGATGTGCCGTCGAGCCGGC
CGCACGTTCGGAGCGTTCGGAGCAGCCCTCGATGTCGAGTACGCGAGACT
GGAGGAATCTAAGAGGGAAACATCGTCGGGTGGGGTAG
back to top