mRNA_H-paniculata_contig1860.4598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 110 bits (275), Expect = 4.990e-26 Identity = 53/122 (43.44%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 7 RWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLS 366
+ +L+AP++ E+F++ P F S + + V RL+KSLYG KQSGRNWN LD++L+ G + D C+Y + + GE I+V ++VDDL+IA +K+ +FK N+ +FRMKDLG +S
Sbjct: 257 KTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEIS 376
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 109 bits (273), Expect = 8.490e-26 Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 16 YLNAPVEEELFVKLPPQFSPF-SRDIPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
YL + +EE+++VK PP + + S V RLRKSLYG KQSGRNW+ +D + G G S+ DPCLY GE +++ +YVDDL+I RE V +FKH ISR F MKDL L
Sbjct: 90 YLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKEL 206
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 107 bits (267), Expect = 9.710e-26 Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 16 YLNAPVEEELFVKLPP---QFSPFSRDIPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
YL + +EE+++VK PP Q P ++ V RLRKSLYG KQSGRNW+ +D + G G S+ DPCLY GE +++ +YVDDL+IAG R+ VD+FK IS+ MKDL L
Sbjct: 90 YLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKEL 206
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A2G8LML6_STIJA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LML6_STIJA) HSP 1 Score: 103 bits (258), Expect = 1.350e-25 Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 1 GCRWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLS 366
GC++ YLNA ++ E+FV+ P + S D V +L+KSLYG KQSGRNWN L + L G Q + D CLY G+ DI V V+VDDLVIA E + EFK + +F+MKDL +S
Sbjct: 58 GCQFAYLNADIDTEIFVRQPEGYEVMSEDGEELVWKLQKSLYGLKQSGRNWNQLLHEHLTSEGFQRNPADHCLYHRG--VGDQDIYVLVWVDDLVIAASNETLMSEFKDCMKIKFKMKDLLEIS 179
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 109 bits (272), Expect = 2.370e-25 Identity = 52/122 (42.62%), Postives = 80/122 (65.57%), Query Frame = 1
Query: 7 RWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLS 366
+ +L+ P++ E+F++ P F S + + V RL+KSLYG KQSGRNWN LD++L+ G + D C+Y + + GE I+V ++VDDL+IA +K+ +FK N+ +FRMKDLG +S
Sbjct: 282 KTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEIS 401
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.340e-24 Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 16 YLNAPVEEELFVKLPPQFSPF-SRDIPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
YL + +EE+++VK P + + S V RLRKSLYG KQSGRNW+ +D + G G S+ DPCLY GE +++ +YVDDL+I RE V++FKH ISR F MKDL L
Sbjct: 530 YLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKEL 646
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A7D9F138_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F138_PARCT) HSP 1 Score: 105 bits (263), Expect = 3.530e-24 Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 7 RWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLS 366
+ +L+AP+ E+F++ P F S + + V RL+KSLYG KQSGRN N LD++L+ G + D C+Y + + GE I+V ++VDDL+IA +K+ +FK N+ +FRMKDLG +S
Sbjct: 241 KTAFLHAPINHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNLNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDLGEIS 360
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.470e-23 Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 16 YLNAPVEEELFVKLPPQFSPFSRDI-PFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
YL + +EE++++K PP + + + V RLRKSLYG KQSGRNW+ +D + G GL S DPCLY GE +++ +YVDDL+I R D+FK +ISR F MKDL L
Sbjct: 310 YLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKEL 426
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.070e-23 Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 16 YLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
YL + +EE+++VK P + + + V RLRKSLYG KQSGRNW+ +D + G G S+ DPCLY GE +++ +YVDDL+I RE VD+FK ISR F MKDL L
Sbjct: 319 YLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKEL 435
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT) HSP 1 Score: 98.2 bits (243), Expect = 5.160e-23 Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 7 RWVYLNAPVEEELFVKLPPQFSPFSRDIPF-VRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSLS 366
+ YLNAP++ EL+V+ P F+ +D + V +LRKSLYG KQSGRNWN+ L LV G S +D C+Y G++ +V ++VDD++IA + K N+S+RF+MKD+G LS
Sbjct: 94 KTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKIS--GKSMTIVIIWVDDIIIASNCTVTLTNVKGNLSKRFQMKDMGKLS 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1860.4598.1 >prot_H-paniculata_contig1860.4598.1 ID=prot_H-paniculata_contig1860.4598.1|Name=mRNA_H-paniculata_contig1860.4598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp GCRWVYLNAPVEEELFVKLPPQFSPFSRDIPFVRRLRKSLYGFKQSGRNWback to top mRNA from alignment at H-paniculata_contig1860:14514..14879+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1860.4598.1 ID=mRNA_H-paniculata_contig1860.4598.1|Name=mRNA_H-paniculata_contig1860.4598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig1860:14514..14879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1860:14514..14879+ >mRNA_H-paniculata_contig1860.4598.1 ID=mRNA_H-paniculata_contig1860.4598.1|Name=mRNA_H-paniculata_contig1860.4598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig1860:14514..14879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |