mRNA_H-paniculata_contig186.4594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig186.4594.1
Unique NamemRNA_H-paniculata_contig186.4594.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig186.4594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig186contigH-paniculata_contig186:15348..19842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.193241-CDS-H-paniculata_contig186:15347..155171622929437.193241-CDS-H-paniculata_contig186:15347..15517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 15348..15517 +
1691480860.873087-CDS-H-paniculata_contig186:15347..155171691480860.873087-CDS-H-paniculata_contig186:15347..15517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 15348..15517 +
1622929437.2050116-CDS-H-paniculata_contig186:19811..198421622929437.2050116-CDS-H-paniculata_contig186:19811..19842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 19812..19842 +
1691480860.8835633-CDS-H-paniculata_contig186:19811..198421691480860.8835633-CDS-H-paniculata_contig186:19811..19842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 19812..19842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig186.4594.1prot_H-paniculata_contig186.4594.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig186 15348..19842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig186.4594.1

>prot_H-paniculata_contig186.4594.1 ID=prot_H-paniculata_contig186.4594.1|Name=mRNA_H-paniculata_contig186.4594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
LSLTSLFLPQVVRPSELASRGKIAGGVAPFTCSELGSVGVACTIGSSIGS
SAVSLICDSRGTIGIL*
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mRNA from alignment at H-paniculata_contig186:15348..19842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig186.4594.1 ID=mRNA_H-paniculata_contig186.4594.1|Name=mRNA_H-paniculata_contig186.4594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4495bp|location=Sequence derived from alignment at H-paniculata_contig186:15348..19842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAGTTTGACGTCTCTTTTTCTTCCTCAGGTGGTTCGGCCTTCGGAGTT
AGCGAGTAGGGGTAAAATTGCAGGCGGGGTCGCCCCGTTCACTTGCTCGG
AGTTAGGTTCGGTCGGTGTTGCCTGCACCATCGGATCTTCCATCGGTAGC
TCGGCCGTTTCACTCATCTGGTAAGCGCAATATCTGTGGCCGGCGATCTA
TTTGCCCGAATCTGACGAGATCCGCGTTTAGGACAGGTTGGATCTCAGAT
GGTCGGTACACGCTGCATGTGACCTATTTCCCATGCTCACTGTGAATCCC
TTGTGATCAAATTGAACGGAGGTATGTCTCATCGTGGACCAAAAAGTTGC
TAAATCACATCAACCTAAAAACATCAAGAATTTGATACCACGATTGAGAT
TTGACCCTCTCAGCACATATCAGTATACCACATTAAATACCACACGCCAC
AACTCCAACACTGCGCCATCGCAACGTCGACCAGACGTCCCTCACAGGCA
GTGGATTTCACCACGCGTATCATCATACGGGTATATTTTCTATGCACACG
TATATACACCACAATACTGCACACACGCATAATCAATCAATCTTTGTGCT
CCTTCTGAGGTAACCCTTCGCCATACAGGTTGTGCAAGGCATCCTCGTAG
GACTTCGGCAAGTGGTCCACTATAGCGGTGTCCACCATCAATATCCGCGC
GAACTGTCGAAGATACGCATGAACAACATGTCATATTTTCAGTAATTGGA
GGAGAATTCGTGATAGAGGTGCTGTAGACTGAACCATCCATCGAATTTCA
ATTAGAGGTTGTTCAAACACGCAGGGATACCACGCTTTGTACTGTAGCTA
GCGGTCAACACCGTATCAAAATAGGATTCAGTCTACTGAGCTCTATCCAA
GATCAGAAATCGCAATACCGTTTGGCCAATTCAAGCCCCAACGCCTCGTA
TCGTATCGACATGCACAAATGGCTGGTGCCACAGCAAAACACCCCCGACA
AAGACGAGTGCACTTTCACAGAATCATGGTCACCACACCACGCGATGCGA
CACTACATTATACCCCCACCGCCGCAAATCAAGCAACCCGTTAGGTAGCC
TGGTTGAGTAAAATTATCATATAACGATGCACAACAATGTAAACAGGGAC
CAAAAACCAAAAGGTGGACATATCACGTACCTGTATCGGCAATTCTCTCT
CCATCCAGTACACCGCCTTACTGCGCGCCCCCACAGCCCCGCCCTCCCCA
TCCAATGCGGCAGCAGCGATATCACCGAGCTTCCGCATGTGGAAAATATT
TCCAGGGATAATGAGCTTCTCGTACTTATCGTTACCCATACGGTGCGCCA
TAACAGCCGTCCGGCGCGCGCGATACTCGTTTTTGGGGTTCGGCAAGCGA
GCTCGTCCATCGGCCGTGAAATCTTCTTCGAGCTTGCGCAGCACGAAACT
CTCCAAGGGATCTTGCCGCTCTTTGCCGTTGGCAACGGGCTTTTCTTCTT
TGCCTTTGGGATCGAGAGTGCTCTTGCTCTTGTTTTTGTTTTTCCCCCCC
CGGGATCGTGTTCGGTGCAGGATGGTAGAGTAGCGAAGCGACACCATGAC
ACCCCTCGCGCCAAGCCCGTCATCGTCGACGCAGACGTGTGGCATGTGTT
CTCGCAAGAGATACTTGCAACGAGAGGGGAGGTTGGCCTGTGCCAATCAA
TGAATCAATAGACAGATCGAATGATAAACCAACAAACGGAAACGATGGTA
AGATGCTAGGTGCTCAAGAATATGAATCGTGCTTGATTATGAGATCGATA
CTACCTAGTTACAATACCACACGACACAAGGTGGTGAAGAATATAGAATG
CCAAGCACAAACCATTAAGAGCTACTATAGCAATGTTCAGCGAAGGGACG
AAATATTTGCGGGGAGTAAAAACGAATCAGTGGTAGTACGCACGATGGTT
TCTCGTTCTCAGATCAGGGAGGATTGATTAATGCCGAGAGAGAATACACG
GGGTCTGACGCCACACCATGGCGCATGACACAGGCAGGACCCATCATACT
CTAAGCGCCTTGCCTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTGAAGCACTACATCCGCGAAAAAAAGAAACCAGAATTTTACTCTCA
CCGCGTGACGGTCAAAAATCATTTTTTTATCGTAATGACCACACCCACTC
ACCCCTACGGTAGACACCTCTTTAAGGTCTCGAAACAGTCCGTACGCGTT
GGCGAGAGACAAACGCGGCACCATGTCGTTCCGGAAAACAAAGGCCCGAA
TGGCCTTCTTCGCTTCCACGGGCACCTTGGACAACGGCCCGAACACCGGC
GGGGGTGCAAACGCGTAGCACAGAACCTCCGTTCTCCGGCTGATCCCGAG
CTCTCGTCTTCGGTGCAGGATTATCATCGTCAGAAGCGTGCTCACACCTG
GATGCAGATATAGGCATTTCGAATCAAAAGTAGCGCATAACCGATAAGAA
TCAACGGCGAGAAACTTTGCCACGAATGCATAGCGGTACTTCAAGTTTTG
GTACCATTTATACAACAAAATATATCAAAACAATTAAGAACGAAAAATGT
TTGGTATCCCAAAATTCGCCAAGTTTTTTCCATCTCGTGATTTGGTAATT
TTGAATGGATGATGAGGCGAAGGTAGGTAGCACGCAATCAATACCTTCGC
AAGTCACAGCAATTGCATTGTTCTACAACGTTGTCCACTAAAAACTTGGG
AGTGATTCGGGGTTGCCAACTCAGTGACCCAGTCGTCCGCACAAACATGT
TGTGCTGTCAAACTAATCTTCTTTTTCCTCGAAAATCTCCCGCAAAAAGG
CACTGTGCGCACCTCCTCCCAAGCTGTGACCGCATAGAACCAGTCGGTAG
CCTATGTTTTGACTCAACGCCTTGACTAGGTCATCCTTGGCATCCTCCAG
GAGATACTCTGCCCCTTGGCGTAGCCCTCGGTGACAAGAACCTCCCATAA
ATTCTGTCAAAAAAACATATATTGGCAACGATTGCAAGTACACACGCACG
TCGTAGCCAAATCAAGCATACCTGCAGTGTGGGGCAAGCGATCCGGCACG
GGCGATAGATCCATGCCCATGACGGTACACCAACAGTTACCACGATACGC
GTCATCATGTCAGAAATCGATCACCATGAAATCGCAGCCACCTGTTACAT
AACTAGGATTCGACTACTGTACCGAGATACCAGAACATGTCACTCGTTCT
TCTACTCTTTTGCGGTATCGTGTCAGTAGTGAAAGGACCTCCGGGGAAAG
CGAGTAAACCACAACAAGCGACCTCAAAAGGTGTCCAGGGCTGAGCTCCA
AGCACATCCTCTCGGAGTGTTTTGACCGCCACCGCCAATCTTATCGAGCG
TTCCCGCTATCATTTCACCAGCCAACCGATGGGGATGAGAGGCAAAATCG
CAGCCGTCGTTAGAAATACGAAACCTCTGCCTGTCTCTCCGTGCGCTTTC
CCCCCCATGTCTTGCATTCTGTTCACTCTCTATTCGCTCGCTATCCCACC
TGCACTATCGCAAATGAGGTCCGTGACCGCGTCCTGCACGGAAAACGTCC
CTCTCACGGACAAAACCACACTTTTCGTGGCGTGGTCCACGACGATGATG
TACGCTGGCAAGTGAAGCTTGCGTGTCTCGAACAGGTTTATCTTCACTAG
GTCCTCCTCAGCAACGCCACAATGCCTGCAACAGTACCGCAGTCAGTAAT
CAAGTTGTCCACGACATGAAGACATGCCATGCCGGACGATGAAGGGAGGA
AAGGAAGAGAACGCAGGTCGGACACAGGACACGGGGTCATGATGCACGCG
GGAGCACTCATTTCCAAAAATTGTGAAGGGTGCTTGAGCCAATAGTTCAT
CACCCCTCTCTCATGGACGAGTGATGGCCTAGGAACACGATGGCTGAACA
CTATTAATATTAGGAATCTAGCCGACGACGACGGCCCAGCGTAGTACATA
CTACCTCTGTCCTATAACGGTACTTTGTACATATCATTGCAATTTGGGGG
TTCGTGAAAAACAAAGCATATCATTCAAAAGTCGACATTCAGCTTGCATA
TACATATCTTCAAAAAGCTTATTGAATCTGAAATGGTTGAGAACCGGGTG
TCTCAAAATATATATTTTTCAGAAATGGTAGATTTTGCAAAAACAGCAAA
ATAGGCCGACATCGGCTGAAAATTATGGTTCTCCATTGTTTAGCGAGCCA
TTTCTTCACATGTACACAGAGTTTCCAAACGAGAAAAAGCACAAGCTAAG
TCCCTCAGTCATACCAAGCTGGCGACTGTGTGTTCAGAATATTTATTCCG
ATTTTCTTCAAAACAAAATAAAATTCTGGAATATAGATTCATCAAGGTGC
AGCACAAGAGTCACATTTCCTAAGTAATGTTCATCTACGCCATTTCCCGC
CTGAACACTGACAGTGACTCCCGCGGCACGATCGGGATATTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig186:15348..19842+

>mRNA_H-paniculata_contig186.4594.1 ID=mRNA_H-paniculata_contig186.4594.1|Name=mRNA_H-paniculata_contig186.4594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig186:15348..19842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAGTTTGACGTCTCTTTTTCTTCCTCAGGTGGTTCGGCCTTCGGAGTT
AGCGAGTAGGGGTAAAATTGCAGGCGGGGTCGCCCCGTTCACTTGCTCGG
AGTTAGGTTCGGTCGGTGTTGCCTGCACCATCGGATCTTCCATCGGTAGC
TCGGCCGTTTCACTCATCTGCTGAGTTTGACGTCTCTTTTTCTTCCTCAG
GTGGTTCGGCCTTCGGAGTTAGCGAGTAGGGGTAAAATTGCAGGCGGGGT
CGCCCCGTTCACTTGCTCGGAGTTAGGTTCGGTCGGTGTTGCCTGCACCA
TCGGATCTTCCATCGGTAGCTCGGCCGTTTCACTCATCTGTGACTCCCGC
GGCACGATCGGGATATTGTAATGACTCCCGCGGCACGATCGGGATATTGT
AA
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