mRNA_H-paniculata_contig1855.4573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1855.4573.1
Unique NamemRNA_H-paniculata_contig1855.4573.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1855.4573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1855contigH-paniculata_contig1855:2742..8813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size223
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929434.8644388-CDS-H-paniculata_contig1855:2741..28001622929434.8644388-CDS-H-paniculata_contig1855:2741..2800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1855 2742..2800 +
1691480859.884494-CDS-H-paniculata_contig1855:2741..28001691480859.884494-CDS-H-paniculata_contig1855:2741..2800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1855 2742..2800 +
1622929434.8811042-CDS-H-paniculata_contig1855:8649..88121622929434.8811042-CDS-H-paniculata_contig1855:8649..8812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1855 8650..8812 +
1691480859.8928895-CDS-H-paniculata_contig1855:8649..88121691480859.8928895-CDS-H-paniculata_contig1855:8649..8812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1855 8650..8812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1855.4573.1prot_H-paniculata_contig1855.4573.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1855 2742..8812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1855.4573.1

>prot_H-paniculata_contig1855.4573.1 ID=prot_H-paniculata_contig1855.4573.1|Name=mRNA_H-paniculata_contig1855.4573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
LTEEGSSAKVGAAVALIVESTGHLFRSITSRSRLSCAVLLHNVVAMRPVA
ENLCSEGACVAGIANTHLASTVRR
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mRNA from alignment at H-paniculata_contig1855:2742..8813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1855.4573.1 ID=mRNA_H-paniculata_contig1855.4573.1|Name=mRNA_H-paniculata_contig1855.4573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6072bp|location=Sequence derived from alignment at H-paniculata_contig1855:2742..8813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACGGAAGAAGGGAGCAGTGCTAAGGTCGGAGCTGCGGTCGCCCTTAT
CGTAGAGAGGTATGAAAATAAATTTCAGTAAGTTAGCCACGCTTTTTTTG
CTGTTGTTGCTGCTGCTACTGCTGCTCCTTCAGGTAACAGATTATCCTCA
TGTTTGGAATCTTGAAATCTTTTCATGCTTTGATTAGAGTGACGGCCTTT
TTTTGTGGAGAGAGCTGAACATTGTTTTGCCACGAAATTGGAATTTGCAA
TGCTGCTCCAACGGTTACTTGGACGAGAAGGGGTTGTCCCCCTCCCTCAT
CACCTCCCACTTTCTATTGGTTCTGTTTGTGATTACCGTGTATGTAAAGT
CATCAAATTAAATCTCCGACGGCGGAGGTCTATATGGATATTGGATTTTT
TTTGTAGGAAGGACAATGCTTAGAGCAGCGGGACGATGTCTGGGATAGTG
ACAGTATTCCTTTGAATTTTGGTTATCATTTCAACAGCACACCGCACAGG
CGTGCACAGGCGTGCACATAGACTACCATTGGATTGACCGCCTTGGGCGA
TACCGGCATCTGCTAACATCTCAAAATCTCTTGTCATTGTTTTGCCTCAG
TCGCAGTAGGATAGCATTGGGATGATGCTGCAATTTAGTGGTCCGTTCTA
CCCCTGTGCCCAACATCTCTTGTGCTATACTACATTGAATCCATATCCAC
CTCTCCCCACCGCTCGATCAAACAAAATGTGTACACTGCACTCGCCCAGC
TGTTGCACTTACACACAGAGCACAAGCAGCCGATCGCGTGCGTCAAATCA
AAATAGTTGAAGGAGGTGAACGTGTCAAGCGCGAATGTCCGTACCCAAAT
CTATTCTGTTGATAGATACTTAACGAGAATTTTTTACGGTCTGTGATTGG
CTATTTCGGCTCGAATAATTTGATTTTATCTCAGAGGCAGTTGCTCCATG
TTTTTCTGGTGTTATTTTGTATGAGCCGTCGCCGTGCACAAAAATCAACT
GTACCCTCCAACTTTTTGCCATCGCGCGAACCTGTACAGGGTATTTCTGT
CGGCTTACTACATTGACACAAATGTTACGGAGTGCGCGCGCTGCTCCCGA
AACTTTTGGCAACTGTTCTGTTTCCGTGGTCATCGTACTTCATTTTACAG
TAGACCAAGTTCGATATGGGGTCAACTTAGCTCCAAATCCAAATCTATTG
GTTCGGCCGAACCGGGGTGGCGCCTACCCCGCAGAAGAATAAATAACTCT
GTTCTGTAAAAGGAAATGTAGAAATACTTTGGTAAAATACTTCAAGTATG
GAAGCATCGGTAAAGGTTTTTTGCCTCAGCCTTCTGGGGGTTGAAAAATA
AATAAATCCAAATCTACATTCCAGAAAATCACTCATGACAAAATCTGAAA
ATCCATAGTAAAGACATTACGCTAATTACCATGACTACTTGACCAGTTGA
TGCGTAACGCAGGTGTTGATTATTGAATTCAACCGGCACAAAACCGAACG
ACACGAATGCTACAGAGGTGGCCAGCTTGGCTTGTTTCATGGTTTGCGCA
TGGCTGCGAGAATACTCCCTCCCTGATCCATACATTTCACTCAGGACCAG
AAGTATAGTATGGCACTAAACGATGGATGGTCATCCTCTAGCCCAACCTT
AAATCACACCTACTAAATATCAAATTAAAATTTGTTATATCCCTCAACAA
CGAGCTGCTCTGCGGCTAAACGCACGCAGGATAAACGGCCACTTCACTTC
GACGATGGGAATCGCAATCAAATTAAATCACCTTCCCTTCCAGTTTCGTC
ACGTGTAGAGAAGACTGTCACATGACCGCAAGCTAGAACGCAATGCGAGC
CTTGATAAGAGGGGGCCGAGCTTTATCGTCTCACCATAATGCCACCAAAA
TTACCGTCAACAGTCACCGCAAACATTTACATCCACGCTGGACGTTTAGA
CAAGCGACTCATTGGCGGCCGAAATCTTACATACAACTGTAGGCTCAACG
GGAAGGATGAAGCAGAAGGGTGGTGCGAAAATGGGTCAGTCATGTATGAC
AATCAAATGACAGTACTTCACTTCAAACTGCGTTGCACATATTGTGGAGT
GAAAACGTTCGAAAAAAACTGCACTCTCGAATGTGCTAGAAAGATAGTCA
AGTCAAAGAGAAAAACTCAGTACGTTTGTGGCAAACCTACTGCGTCTCTA
CCTCAAGACAAGCGTTGTTGCATGCATTCTGCACTACGGTTTTGGGTTGG
CATGATTTTATTGTAATGACCTGTTGTCGATATTCAATGCACATAAACCG
TCGGCAGTTTAAGGGGAAGACTAAAAGCTCTTGATTGCAAGATCTATTCT
CGCTAACCACCTAGTTCACGCAGATATGACTGAAGCTTCTCATTGGCACT
AACTCAGCATGGTCCACACCACAGCAGCTGTAGGTTTTGCTCTGCAGGTA
CCTAACCTACGGCGTATATGACATGCGAAAAACACTCCGGGCGAGAATCT
CCATGATAAAGGGCGGTACTGCAGTGTGATCAGCGTTTTGTGGATATTGT
GCAGATTTCTGACTTTACATTAAAGGGCAAGCCACTCAACACGTCGATTC
TATGGAGTTGTTGAGCAATCTCGTTTTGATGACACGCGATGTTTCAGCCT
CATGTATCCTACACAGGACTTGACTTGGACTGTCTGGATAACTGCTACTA
AATGGCTCATCGCACATACTGCGCAGATCATGGTTATATCTCACGACACA
AAATGTTCTGAAGCATTTAATAGAAGAAATTTCATGTCGGCAACCACATT
CGTAAAGCGTCATGACAAGCCAAGTGAACCGTACTAACGTTTGGCGCAGG
CAGACCGAATCCAAAACCATCTCTGGAAACACTGTCAAAGCACACTTCAA
GTCAGAAAAATACTTCAATCTAGTCCAATAGGATTTAAAAAACACGAATC
AACGATTAAAAACGTTCATTATAAGAAATGGACAAAATGCTCCAACAATA
ACACATACGGACAAATTACAGCGCAAACTAATTTATCTTATTTGCTCCTT
CAAGCAAATAGGTTTGTCCCCAACACTCCAAAATCGGTGCACTCTAGACC
ATTTCATATTGGACAAAACAGAAAATCTCACCCAGCACTCTCCTCGGACA
CCCCTCAGGGGTCTGAAATCTGTCTGCATTTCCGTCCGTTTGCCAATCAT
CGCACACAGAAATGGCCTCACCAAGTACCCCGCAGGGAATATCTTCTCCA
ATAGGCATATCTCCAAGCCCCCATGCCTGCCGCTCCACGAGCTCCGACAC
CGCGGGTCTAGCCCCTCTCTCTTGGGCCACAAGGCCTCGGCCGGTCGCAC
AGGCAGATAAAATGAGCTCTATCTCGAGCTCGTTCGGGATGACGATTTCA
GGCCCATCCCTGCATGCCGTCACCATCCTTGTGAACGATTGCATTGTCCA
CCCCTAAAGGCAGATATCTTCTCCATCGCCGCAGTAGGCTGTATCATGTG
CGGCTGCGGAAGTTCGCCCCACTTCACACGCGACGGGAGCATCGTCTTCC
TCTCAATTGGTCTTGGAAGAGGGCTGCCACTACAGTGCTCTTTTTTTTCG
TGCTCTTCGGCTGCATCCTTCACGGCTGCTGCATCAGTTTCGATCTCATA
TCCTATATATCTATCACCTTCTGCACTTCCGTGCTTTCGCTCCCCACGGG
CCCCAGCAGATCCCGTAGTGCTTAAGATGTATTGTGGTCTTGGTGACAGG
TTATGTGAGGGTCTTGTACCGGTCTGATCTAGGCGTCCCGAAATGACTGT
AGCCAGCAGTCCTACAACTTCCGTCTGTGATACCTGTTGTCTGCAGATTC
ATCATCTCAAGGAGTCGATCAAATTTAGCAATCGTGTCAGCCGCAACTCC
GCCAGTTCTACTTGAACTTCTGAAACAGCCGTTTTGGGCGCCTGGTTAGT
GATGTCCTTGGTTTGGGCAGCAGTTTCCTCTACACACCTAACCCTCGTTG
TGAGTACCCTTGTTGTGTGAGTTCTCTAATCTCATCATGCCTACTGCCAG
ATTAAACTCTAGCCACCTTTCTTACCTAAGCAAACGCAATAGATGTAAAC
GCAGCGTTGTTGTTTCTGGAAGCATCAGGTGATGCAAGGCTCAATTGATA
CACTCACGATTGGCCTAGTCCCAGTCGCTGTCTTCCATTTTTCACTCGAC
TTGACGTCAATACTTTGTCCCACGAGTAAAATACGCGATAAGTTGAGAGG
GACTTGATCATCTCCAATTTATTCTCTTTTCTCACTTGTAGAACCCTACA
TGTTTTGGGGGATGATCCTCAATGATCCTCAATAGGAGAAGCAGATGGAT
TGGCTTGTAACACAAAAGCTCCCGCCATGCTGAAAAATATTTGACCCGGA
AAATATCACATTTTGATGGCGTAATGGTGGAAGTAAACGATACAAAGTAT
ATCGGAGATAGGCGTAGCGGATATGCCGATGTATCGCCCAAATATCGGCC
GCGCACAGCGCCAGGGTGGAGCCGCAACGGCACCCCCCGGTTGGTAAGCG
ACTCCCGCTGGAGGCGCCGTTGAAGGCATGAAAGTTACTCGTTTTGGTTT
CATCTCTCCTCAAAATTAGACCAAAGCATTGCCTGGGTGAGAGATGGGTA
ACAAACCCGACGTAAACACATGATAACAGTCGAGCGATGGTTGCAAATAT
TTGAATGTGGTGCTTCTAGCGGGCAGTTTATTCTTGTGGGGACATTATTC
AGCTCTTTTAGAATTATATTTTGAGGTTTGTATATCAAACGCAAGTAACA
TTCGCAAACACTCCACAAGGAATCAAAACCTATCCCACGGAGGAATTCAC
ACACAAGCTTTACGTGAGAGCATCGATTACCTGGCAGCAAAAATAAGCGG
GGAAATTGGTCATGAAAAACGAGCTGTGCTGTAGTTAATAGGCGAGAAGT
GGAGAATGGCTTTCTGTCCCATCCATGTGCTGCTACTGTCCACGAAATTA
GAAAAAAATAGCTTACAAAAACACATTATTCAGTGTGATACAAGGGGATA
TTATTTGCTTTTTCATCAGCAAGGAAGGAAAAAAAAATGGAACAATACTG
GATCCTACCAAAACTAAGCTTGGATAATGACGAATACTTGCTGATGTGAA
ACGGCGAACACAGAAACCTAAGTAGGTGTTGAAACAAGCGAGGGAAAGTA
GGCAACGGCACAACGACGCAACCATGCAGAGTACAGTATCGGAGAGTATT
GCAGAGGTTTTATTGTCGATCTTTCTCAGATTTTGTGACACGGTTCCTTC
CTCCAGATATGACACTCTTTCAGCATTTCCTGGTCAATAGTTTCAAAAAG
GTTTCTTGACGTTTTTTTTTTCCTTCTCCCCTCCTTCCTCACACAAACGT
AAACCCGATTGCAACTGGTATGCGATGAATACAGCGCCGGTGGTCCTATC
GCGGTCAATCCAATGGAAGTCCTACTCACATGGAACTCAACTTTGCAGGC
ACCTAGACTTAATTTCTCAGGATGGAGTCTTGGACTTATCGGGTCTTGGG
GTGGGAGAGAACAGGAGTGAGTGGTAGTAGGTGGTGGTTCTGGTGTGCAT
TGCCTGTTCTCGTTATGGTATCATATTAGTTCCCCACGTCCCGTGTAACG
TTCTGCAGCACCCCGGTCACTACAATCCACTTCTCGAACAATGGTTGACC
ACGCGGTATGTCACATGCATCATTTCCTAGATCCTTGGTCTGTTATCAAC
TTATTCGACCAACATCCTGGCTGCTCCTCAGTCATGAAGAATGTGATCCG
AATATTGTTTTACCCTGAATCACCAGTATTTGTCATGTGCGATACTGTCT
ACGATAGTGTGATATGATCAAGTCCATTGCTTTTTTCCCCATGACTACAC
TTCAACAGCACTGGTCACCTGTTCCGCAGTATTACCAGCAGATCGAGGTT
GTCCTGCGCCGTCCTATTGCACAACGTGGTAGCGATGAGACCAGTGGCTG
AGAACTTGTGTTCCGAAGGAGCATGTGTAGCCGGGATCGCGAACACGCAC
CTGGCAAGCACCGTCAGGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1855:2742..8813+

>mRNA_H-paniculata_contig1855.4573.1 ID=mRNA_H-paniculata_contig1855.4573.1|Name=mRNA_H-paniculata_contig1855.4573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig1855:2742..8813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACGGAAGAAGGGAGCAGTGCTAAGGTCGGAGCTGCGGTCGCCCTTAT
CGTAGAGAGCTCACGGAAGAAGGGAGCAGTGCTAAGGTCGGAGCTGCGGT
CGCCCTTATCGTAGAGAGCACTGGTCACCTGTTCCGCAGTATTACCAGCA
GATCGAGGTTGTCCTGCGCCGTCCTATTGCACAACGTGGTAGCGATGAGA
CCAGTGGCTGAGAACTTGTGTTCCGAAGGAGCATGTGTAGCCGGGATCGC
GAACACGCACCTGGCAAGCACCGTCAGGAGACACTGGTCACCTGTTCCGC
AGTATTACCAGCAGATCGAGGTTGTCCTGCGCCGTCCTATTGCACAACGT
GGTAGCGATGAGACCAGTGGCTGAGAACTTGTGTTCCGAAGGAGCATGTG
TAGCCGGGATCGCGAACACGCACCTGGCAAGCACCGTCAGGAGA
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