mRNA_H-paniculata_contig1841.4519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1841.4519.1
Unique NamemRNA_H-paniculata_contig1841.4519.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.060e-19
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGL-QLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
            +S TG+M F A  LI+FSSR+Q+I A  ++E E   +   AK G+Y   +  ELG  QL   ++ +D R AL L +N  +S+RS+HI++R+ AL+ W+   ++ +DHV
Sbjct:  744 KSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHV 851          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.030e-18
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
            RSTTG +FF   GLI + ++ Q + A  T EAEL AL+  A++ +Y+     E+G +   S  + SD+ GAL +A+N+ +SSR+KHIA+RF  L++  + H++ + H
Sbjct:  159 RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHH 265          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.470e-18
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
            RSTTG +FF   GLI + ++ Q + A  T EAEL AL+  A++ +Y+     E+G +   S  + SD+ GAL +A+N+ +SSR+KHIA+RF  L++  + H++ + H
Sbjct:  596 RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHH 702          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.590e-18
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
            RSTTG +FF   GLI + ++ Q + A  T EAEL AL+  A++ +Y+     E+G +   S  + SD+ GAL +A+N+ +SSR+KHIA+RF  L++  + H++ + H
Sbjct:  755 RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHH 861          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A2N9GG47_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GG47_FAGSY)

HSP 1 Score: 84.0 bits (206), Expect = 1.420e-16
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
            RSTTG +F  + G I + S LQ I A  T EAE +A+AK AK+ ++L G+ +ELGL     ++  D++ A++LA N  Y +R+KHI +RF  +++ I    ++++ V
Sbjct:  900 RSTTGYVFTLSGGPICWKSTLQSIVAMSTIEAEYMAVAKAAKEALWLKGLVKELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKV 1006          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-16
Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
            RS TG +F    GLI + ++ Q + A  T EAEL AL+  A++ +Y+     E+G +   S  + SD+ GAL +A+N+ +SSR+KHIA+RF  L +  +RH++ + H
Sbjct:  673 RSPTGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHH 779          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A4Y1R6X5_PRUDU (Toll-Interleukin-Resistance domain family protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R6X5_PRUDU)

HSP 1 Score: 79.7 bits (195), Expect = 3.950e-16
Identity = 39/107 (36.45%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
            RSTTG +F   +  + + S+LQKI    TTEAE +A+ + +K+ I+L G+  ELG +     + SD++ A+HLA NS + SR+KHI +R+  ++  +    L ++ +
Sbjct:   70 RSTTGYIFTVGNTAVSWMSQLQKIVTLSTTEAEYVAVTEASKEMIWLQGLLTELGFKQEKNVLHSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLEKI 176          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5KY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY35_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.720e-16
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLII 312
            RSTTG MFF   GLI + ++ Q + A  T EAEL AL   A++ +Y+     E+G +   S  + SD+ GAL +A+N+ +SSR+KHIA+RF   ++  + H++ +
Sbjct:  456 RSTTGYMFFLGGGLISYGAKAQTLAAQNTVEAELQALGFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFPRELTKGHRITL 560          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A2K3M3M2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M3M2_TRIPR)

HSP 1 Score: 81.3 bits (199), Expect = 8.120e-16
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
            RSTTG +F    G + + SR+QKI A  TTEAE +A+ + +K+ I+L G+  ELG       + SD++ A+HLA NS + SR+KHI +R+  ++  +    L +  +
Sbjct:  241 RSTTGYIFTVGTGAVSWISRIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKSVLYSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLSKI 347          
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A0L9UYY9_PHAAN (Uncharacterized protein n=3 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9UYY9_PHAAN)

HSP 1 Score: 79.0 bits (193), Expect = 1.050e-15
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVLIS 330
            RSTTG +F      + + S++QKI A  TTEAE +A+ + +K+ I+L G+  ELG       + SD++ A+HLA NS + SR+KHI +R+  ++  +    L +  +L S
Sbjct:   86 RSTTGYIFTVGTTAVSWMSQIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKTVLHSDSQSAIHLAKNSTFHSRTKHIDLRYHFIRSLLEDEVLTLRKILGS 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV56_9PHAE2.060e-1940.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC04_9PHAE2.030e-1840.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE8.470e-1840.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE8.590e-1840.19CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A2N9GG47_FAGSY1.420e-1639.25Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6H5JN55_9PHAE2.600e-1639.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y1R6X5_PRUDU3.950e-1636.45Toll-Interleukin-Resistance domain family protein ... [more]
A0A6H5KY35_9PHAE4.720e-1640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2K3M3M2_TRIPR8.120e-1638.32Retrovirus-related Pol polyprotein from transposon... [more]
A0A0L9UYY9_PHAAN1.050e-1537.27Uncharacterized protein n=3 Tax=Phaseolus angulari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1841contigH-paniculata_contig1841:23547..23879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score70.5
Seed ortholog evalue5.4e-10
Seed eggNOG ortholog7070.TC002223-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.1206567-CDS-H-paniculata_contig1841:23546..238611622929428.1206567-CDS-H-paniculata_contig1841:23546..23861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1841 23547..23861 -
1691480857.0649865-CDS-H-paniculata_contig1841:23546..238611691480857.0649865-CDS-H-paniculata_contig1841:23546..23861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1841 23547..23861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.1354766-UTR-H-paniculata_contig1841:23861..238791622929428.1354766-UTR-H-paniculata_contig1841:23861..23879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1841 23862..23879 -
1691480857.0745056-UTR-H-paniculata_contig1841:23861..238791691480857.0745056-UTR-H-paniculata_contig1841:23861..23879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1841 23862..23879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1841.4519.1prot_H-paniculata_contig1841.4519.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1841 23547..23861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1841.4519.1

>prot_H-paniculata_contig1841.4519.1 ID=prot_H-paniculata_contig1841.4519.1|Name=mRNA_H-paniculata_contig1841.4519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGL
QLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH
VLIS*
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mRNA from alignment at H-paniculata_contig1841:23547..23879-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1841.4519.1 ID=mRNA_H-paniculata_contig1841.4519.1|Name=mRNA_H-paniculata_contig1841.4519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig1841:23547..23879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTCTACAACAGGCACTATGTTCTTCTTTGCCGACGGATTGATACACTT CTCATCTCGACTACAGAAGATAACGGCTACAGGCACAACTGAGGCAGAAC TCATCGCACTGGCTAAATGCGCAAAACAAGGCATTTACCTTCTGGGTATC TGCAGGGAGCTGGGTCTTCAACTGACTAGCTGCGAGGTTCGAAGTGACAA CCGGGGAGCTCTTCATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCA AACACATCGCCATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGACAT CAGCTTATCATCGACCATGTACTGATCAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1841:23547..23879-

>mRNA_H-paniculata_contig1841.4519.1 ID=mRNA_H-paniculata_contig1841.4519.1|Name=mRNA_H-paniculata_contig1841.4519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig1841:23547..23879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTCTTTGCCGACGGATTGATACACTTCTCATCTCGACTACAGAA
GATAACGGCTACAGGCACAACTGAGGCAGAACTCATCGCACTGGCTAAAT
GCGCAAAACAAGGCATTTACCTTCTGGGTATCTGCAGGGAGCTGGGTCTT
CAACTGACTAGCTGCGAGGTTCGAAGTGACAACCGGGGAGCTCTTCATCT
CGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACACATCGCCATCAGGT
TCGCAGCACTGAAAGACTGGATCAGGAGACATCAGCTTATCATCGACCAT
GTACTGATCAGCTAGATGTTCTTCTTTGCCGACGGATTGATACACTTCTC
ATCTCGACTACAGAAGATAACGGCTACAGGCACAACTGAGGCAGAACTCA
TCGCACTGGCTAAATGCGCAAAACAAGGCATTTACCTTCTGGGTATCTGC
AGGGAGCTGGGTCTTCAACTGACTAGCTGCGAGGTTCGAAGTGACAACCG
GGGAGCTCTTCATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAAC
ACATCGCCATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGACATCAG
CTTATCATCGACCATGTACTGATCAGCTAG
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