mRNA_H-paniculata_contig18264.4456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18264.4456.1
Unique NamemRNA_H-paniculata_contig18264.4456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: D7FT77_ECTSI (Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT77_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.980e-53
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VLEVFS+LFI+IFD +NR CK+E+EAVR QHPF+DLRY+RPTLRLTFQEGIQLL DAGYDAD   DL+T HEKKLGDLVAEKYGTDFFMMDKYPL+VRPFY+MPCP
Sbjct:  414 EVLEVFSDLFINIFDEVNRNCKEELEAVRTQHPFEDLRYARPTLRLTFQEGIQLLIDAGYDADPLGDLSTEHEKKLGDLVAEKYGTDFFMMDKYPLDVRPFYTMPCP 520
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: X1RS97_9ZZZZ (tRNA-synt_2 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1RS97_9ZZZZ)

HSP 1 Score: 160 bits (404), Expect = 9.150e-49
Identity = 74/107 (69.16%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VLEVFS+LFI IFDGLN+ CK EIE VR+QHPF+DL+Y  PTL++T+ EG +LLR+AG D D  +DL+T +EKKLGD+V EK+GTDFF MDKYPL VRPFY+MPCP
Sbjct:    8 EVLEVFSDLFISIFDGLNQRCKTEIERVREQHPFEDLKYLTPTLKITYAEGCKLLREAGIDQDDYEDLSTPNEKKLGDIVKEKFGTDFFFMDKYPLSVRPFYTMPCP 114
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A7S1Y1R3_9STRA (Aspartate--tRNA ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y1R3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.790e-48
Identity = 78/107 (72.90%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VLEVFS+LFIHIFDG+N  CKDE+E VR+QHPF+DL+Y RPTL+LT+ EG  LLR+AG D D  +DL+T +EKKLGDLV EKYGTDFF MDKYPL VRPFY+MPCP
Sbjct:  322 EVLEVFSDLFIHIFDGINERCKDELERVREQHPFEDLKYLRPTLKLTYAEGCALLREAGVDQDDYEDLSTKNEKKLGDLVKEKYGTDFFFMDKYPLSVRPFYTMPCP 428
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A1E7FID9_9STRA (Aspartate--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FID9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.290e-47
Identity = 79/107 (73.83%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VL+VFS+LFIHIFDGLN+ CK EIEAVR+QHPF+DL+Y  PTL+LT+ EG  LLR AG D D  DDL+T +EKKLGDLV+EKYGTDFF MDKYPL VRPFY+MPCP
Sbjct:  409 EVLDVFSDLFIHIFDGLNKRCKTEIEAVREQHPFEDLKYLNPTLKLTYAEGCALLRSAGVDQDDYDDLSTENEKKLGDLVSEKYGTDFFFMDKYPLSVRPFYTMPCP 515
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A448Z4S0_9STRA (Aspartate--tRNA ligase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z4S0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.240e-43
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VL++FSELFIHIFDGLN+ CK E+EAVR+QHPF+DLRY  PTL+LT+ EG  LLR+AG +    +DL+T +EK LGDLVAEKYGTDFF MDKYPL+VRPFY+MP P
Sbjct:  410 EVLDLFSELFIHIFDGLNKHCKRELEAVREQHPFEDLRYCNPTLKLTYAEGCALLREAGVEQGDYEDLSTENEKLLGDLVAEKYGTDFFFMDKYPLDVRPFYTMPDP 516
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A7S1D4Z3_CYCTE (Aspartate--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Z3_CYCTE)

HSP 1 Score: 155 bits (393), Expect = 5.170e-43
Identity = 72/107 (67.29%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VL+VFS+LFI+IFDG+N  CK E+E VR+QHPF+DL Y RPTL+LT+ EG  +LR+AG D D  +DL+T +EKKLG+LV +KYGTDFF MDKYPLEVRPFY+MP P
Sbjct:  311 EVLDVFSDLFIYIFDGINERCKSELERVREQHPFEDLTYLRPTLKLTYAEGCAMLREAGVDQDDYEDLSTENEKKLGELVKQKYGTDFFFMDKYPLEVRPFYTMPDP 417
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A7S1UJ39_9STRA (Aspartate--tRNA ligase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ39_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.220e-43
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VLEVFS LF +IFDGLN   +DEIEAVR Q+PF+DL+Y  P+LR+TFQEG+ LLR+AGY+ D ++D TT  EK LG +V EKY TDF+MMDKYPL  RPFY+MPCP
Sbjct:  163 EVLEVFSNLFCYIFDGLNERYRDEIEAVRSQYPFEDLKYKNPSLRITFQEGMALLREAGYEVDDNEDPTTEQEKALGRIVKEKYDTDFYMMDKYPLAARPFYTMPCP 269
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BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A7S0CMP8_9STRA (Aspartate--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMP8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.110e-42
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VL+VFS+LFIHIFDGLN  C  EIE VR+QHPF+DL+Y RPTL++T+ EG  LLR+AG + D  +DL+T +EKKLG +V +KY TDFF MDKYPL VRPFY+MPCP
Sbjct:  295 EVLQVFSDLFIHIFDGLNTRCAAEIERVREQHPFEDLKYLRPTLKITYAEGCALLREAGIEQDDYEDLSTENEKKLGGIVKQKYDTDFFFMDKYPLSVRPFYTMPCP 401
[Close]
BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A7S2ERB4_TRICV (Aspartate--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ERB4_TRICV)

HSP 1 Score: 155 bits (392), Expect = 2.530e-42
Identity = 72/107 (67.29%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VLEVFS++FI +FDG+N  CK+E+E VR+QHPF+DL+Y RPTL++T+ EG +LLRDAG D    DDL+T +EKKLGD+V EKYGTDFF MDKYPL VRPFY+MP P
Sbjct:  414 EVLEVFSDMFIAMFDGINERCKNELERVREQHPFEDLKYLRPTLKITYAEGCKLLRDAGVDQGDLDDLSTENEKKLGDIVKEKYGTDFFFMDKYPLAVRPFYTMPDP 520
[Close]
BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Match: A0A7S4JC71_9STRA (Aspartate--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JC71_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.370e-42
Identity = 71/107 (66.36%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQEGIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRPFYSMPCP 321
            +VL VFS+LFI IFDG+N  C +E+E +R+QHPF+DL+Y RPTL++T+ EG +LLRDAG D D  +DL+T +EKKLGD+V EKYGTDFF MDKYPL VRPFY+MP P
Sbjct:  410 EVLNVFSDLFISIFDGINERCSNELERIREQHPFEDLKYLRPTLKITYAEGCKLLRDAGVDQDDLEDLSTENEKKLGDIVKEKYGTDFFFMDKYPLSVRPFYTMPDP 516
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18264.4456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT77_ECTSI2.980e-5382.24Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
X1RS97_9ZZZZ9.150e-4969.16tRNA-synt_2 domain-containing protein (Fragment) n... [more]
A0A7S1Y1R3_9STRA6.790e-4872.90Aspartate--tRNA ligase n=1 Tax=Grammatophora ocean... [more]
A0A1E7FID9_9STRA2.290e-4773.83Aspartate--tRNA ligase n=1 Tax=Fragilariopsis cyli... [more]
A0A448Z4S0_9STRA1.240e-4370.09Aspartate--tRNA ligase n=2 Tax=Pseudo-nitzschia Ta... [more]
A0A7S1D4Z3_CYCTE5.170e-4367.29Aspartate--tRNA ligase n=1 Tax=Cyclophora tenuis T... [more]
A0A7S1UJ39_9STRA5.220e-4366.36Aspartate--tRNA ligase n=2 Tax=Phaeomonas parva Ta... [more]
A0A7S0CMP8_9STRA2.110e-4266.36Aspartate--tRNA ligase n=1 Tax=Proboscia inermis T... [more]
A0A7S2ERB4_TRICV2.530e-4267.29Aspartate--tRNA ligase n=1 Tax=Trieres chinensis T... [more]
A0A7S4JC71_9STRA3.370e-4266.36Aspartate--tRNA ligase n=2 Tax=Odontella aurita Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18264contigH-paniculata_contig18264:844..1852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3.2e-34
Seed eggNOG ortholog2850.Phatr42051
KEGG rclassRC00055,RC00523
KEGG koko:K22503
KEGG ReactionR05577
KEGG Pathwayko00970,map00970
KEGG ModuleM00359
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA synthetases class II (D, K and N)
EggNOG OGs2XBSM@2836,COG0017@1,KOG0556@2759
EC6.1.1.12
COG Functional cat.J
BiGG ReactioniRC1080.CRv4_Au5_s6_g12982_t1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01007,ko03016
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.0162435-CDS-H-paniculata_contig18264:843..10271622929419.0162435-CDS-H-paniculata_contig18264:843..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18264 844..1027 +
1691480853.2931836-CDS-H-paniculata_contig18264:843..10271691480853.2931836-CDS-H-paniculata_contig18264:843..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18264 844..1027 +
1622929419.0285168-CDS-H-paniculata_contig18264:1715..18521622929419.0285168-CDS-H-paniculata_contig18264:1715..1852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18264 1716..1852 +
1691480853.3034203-CDS-H-paniculata_contig18264:1715..18521691480853.3034203-CDS-H-paniculata_contig18264:1715..1852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18264 1716..1852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18264.4456.1prot_H-paniculata_contig18264.4456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18264 844..1852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18264.4456.1

>prot_H-paniculata_contig18264.4456.1 ID=prot_H-paniculata_contig18264.4456.1|Name=mRNA_H-paniculata_contig18264.4456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
KVLEVFSELFIHIFDGLNRCCKDEIEAVRQQHPFKDLRYSRPTLRLTFQE
GIQLLRDAGYDADMDDDLTTVHEKKLGDLVAEKYGTDFFMMDKYPLEVRP
FYSMPCP
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mRNA from alignment at H-paniculata_contig18264:844..1852+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18264.4456.1 ID=mRNA_H-paniculata_contig18264.4456.1|Name=mRNA_H-paniculata_contig18264.4456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1009bp|location=Sequence derived from alignment at H-paniculata_contig18264:844..1852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTTCTGGAAGTGTTCTCAGAGCTATTCATCCATATTTTCGACGGATT
GAACCGGTGCTGCAAGGATGAGATCGAAGCTGTGAGGCAGCAGCATCCCT
TCAAGGACCTGCGTTACTCGCGTCCCACGCTGCGTCTCACTTTTCAGGAG
GGAATTCAGCTCTTGAGGGACGCTGGTTACGACGGTGAGTGTTCCTTGTT
TGTTTGTGTAGGACATCGATCGTGTGCTTGGCCGGTTGGAGAAGTTTTTT
TTTGTGTGCTGGTGTCTCACTTCGTTCAACGGTTTTACCTGTTTCTTCTC
CACGCAGCGGTCGTGACATGTGCGCCTTTCAGAAAACAAAGCGTCTTCGA
AGGTGTACAGAAACTCATGCCCGTTTGTTTGTTTGTTTTTTCTTGTCCCG
GACGTGATATGACTCTTTATTGCGCTTTTTTTTTTTTTTCCAGAGGGTTA
GATTTTAGAATTTTTTGGAAAGAGAGCAACTAACTAGGGCAGGCCAAGCA
TTATACGGGAGGCACACGTCCCGGCTGTTCTCTCGGCAAGCAAGTATCCA
CACATCCAACGAGTGTTTAATCATACTTCCTCAACAATGCGATTTAATAC
CTGAAATAGAAACGGTTTTTCCTCGAGTGACGCTACTTCGTTCCTGATGT
TCAAATGAGTGTTTTTACTCGAGTAGTGCGAGTTCATTCCGCAAGTAGCC
ATGAGTCACAACAACGCGTGCGATTCGCATGAATTTCTCTTGCAGTTGTT
TTTGTTTTTTGTTTTTCCGTTGATCTCCTAAGGTTTCAATCAATCATGTG
TGCGTGCCCATCCTGTATCCGAAACCCATATATCCCTTCCCCTTTCCCCC
CTCCCCCACCAAAAAAAAAAAGCCGACATGGACGACGACCTAACGACGGT
GCACGAAAAGAAGCTCGGCGATCTGGTGGCTGAGAAGTATGGGACAGACT
TTTTCATGATGGACAAATACCCGCTGGAGGTCCGCCCATTCTACTCCATG
CCTTGCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig18264:844..1852+

>mRNA_H-paniculata_contig18264.4456.1 ID=mRNA_H-paniculata_contig18264.4456.1|Name=mRNA_H-paniculata_contig18264.4456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig18264:844..1852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTTCTGGAAGTGTTCTCAGAGCTATTCATCCATATTTTCGACGGATT
GAACCGGTGCTGCAAGGATGAGATCGAAGCTGTGAGGCAGCAGCATCCCT
TCAAGGACCTGCGTTACTCGCGTCCCACGCTGCGTCTCACTTTTCAGGAG
GGAATTCAGCTCTTGAGGGACGCTGGTTACGACGAAGGTTCTGGAAGTGT
TCTCAGAGCTATTCATCCATATTTTCGACGGATTGAACCGGTGCTGCAAG
GATGAGATCGAAGCTGTGAGGCAGCAGCATCCCTTCAAGGACCTGCGTTA
CTCGCGTCCCACGCTGCGTCTCACTTTTCAGGAGGGAATTCAGCTCTTGA
GGGACGCTGGTTACGACGCCGACATGGACGACGACCTAACGACGGTGCAC
GAAAAGAAGCTCGGCGATCTGGTGGCTGAGAAGTATGGGACAGACTTTTT
CATGATGGACAAATACCCGCTGGAGGTCCGCCCATTCTACTCCATGCCTT
GCCCCCCGACATGGACGACGACCTAACGACGGTGCACGAAAAGAAGCTCG
GCGATCTGGTGGCTGAGAAGTATGGGACAGACTTTTTCATGATGGACAAA
TACCCGCTGGAGGTCCGCCCATTCTACTCCATGCCTTGCCCC
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