mRNA_H-paniculata_contig18256.4452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18256.4452.1
Unique NamemRNA_H-paniculata_contig18256.4452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 9.740e-75
Identity = 160/470 (34.04%), Postives = 244/470 (51.91%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------------------------KLRSMGSTPTISDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
            P    ++G ++VF+   DG FKARLVV G  Q  G D G S+APVCR+ S R+  A+    +W IY  DV  AFLNA                                                  L  +G   T SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD GEV  ILG++V R+    TL +SQ+ YV ++L+RF M   NP   P    + S     D +L     K Y ++  S+ +L QCTRFD+ ++ +Q ++  S P Q ++ A K VLR+LRG P + I Y   +  L  ++++S+       RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+   ++ VY+     EL  +   S  ++SD+ GAL +A N+ +S R+KH A+R+  +R+     Q+ + H  S  QLADI T++  +  FA + ++I
Sbjct:  227 PEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 696          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.460e-74
Identity = 158/470 (33.62%), Postives = 244/470 (51.91%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------KLRSMGSTPTI------------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
            P    ++G ++VF+ K DG FKARLVV G  Q  G D G S+APVCR+ S R+  A+    +W IY  DV  AFLNA                                L  +  +P +                  SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD GEV  ILG++V R+    TL +SQ+ YV + L+RF M   NP        + S     D +L     K Y ++  S+ +L QCT+FD+ ++ +Q ++  S P Q ++ A K VLR+LRG P + I Y   +  L  ++++S+       RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+   ++ VY+     EL  +   S  ++SD+ GAL +A N+ +S R+KH A+R+  +R+     Q+ + H  S  QLADI T++  +  FA + ++I
Sbjct:   19 PKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 488          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 4.940e-74
Identity = 161/470 (34.26%), Postives = 241/470 (51.28%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------KLRSMGSTPTI------------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
            P +  +   R+VF++KAD  FKARLV  G  Q  G   G ++APV RL S R+L A+A    W +Y  DV  AFLNA                                L  +  +P++                  SDPCVY   S     +L+++VDDIL+TG   +++     +LM+ F  TD GEV  ++G+EV R+    TL +SQ  Y   IL R+ M   NP   P    + S     D LL     + + AI  SL +L QCTR+D+ ++V Q  R  + P Q H+ A K +LR+LRG PD+ I Y   K  L  ++++S+       RSTTG + F   GL+ + ++ Q + A +T E EL AL+   ++ VY+     E+G +   S  ++SD+ GAL +A+N+ +SSR+KH A+RF  LR+ T+  ++ + H  S+  LADI T+H  +  FA + + I
Sbjct:  260 PKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 1.340e-73
Identity = 159/470 (33.83%), Postives = 245/470 (52.13%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------KLRSMGSTPTI------------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
            P    ++G ++VF+ K DG FKARLVV G  Q  G D G S+APVCR+ S R+  A+    +W IY  DV  AFLNA                                L  +  +P +                  SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD GEV  ILG++V R+    TL +SQ+ YV ++L+RF M   NP   P    + S     D +L     K Y ++  S+ +L QCTRFD+ ++ +Q ++  S P Q ++ A K VLR+LRG P + I Y   +  L  ++++S+       RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+   ++ VY+     EL  +   S  ++SD+ GAL +A N+ +S R+KH  +R+  +R+     Q+ + H  S  QLADI T++  +  FA + ++I
Sbjct:  383 PKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 852          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.570e-72
Identity = 163/439 (37.13%), Postives = 235/439 (53.53%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDV---QVAFLNAKLRSMGSTP-----TI-------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQINSCQ--VHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARL 1218
            PP    I  +WVF+ KADG FK R+V QGW+Q  G+DCGS++APVCR++S R++  +    +      D     V  LN  L  +  +P     TI             SDPCVY    N   I L+L+VDD+L+ G     +  V  +L  +F  TD GE SL+L ME+ R++   TL +SQ+ Y  SIL+RF MS   PT  P   ++ S     D+LLD   T++Y  I  SL ++ Q  R+DI ++  Q AR M+ P++ H+VA K  LR+L G  D SITY     +L  +S++++       +ST+  +   AN  + F S LQ +TA ST E EL+A A   K+ V+   +  ELG      Q  V+ DN   LH   N ++SSR+KH A+RF  +R+     ++ I ++ + D LADI T+H     F  L
Sbjct:  550 PPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFNLIFDQMDDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHL 988          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 1.400e-70
Identity = 164/466 (35.19%), Postives = 238/466 (51.07%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFL------------------------------NAKLRSMGSTP-----TI-------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQINSCQ--VHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARL 1218
            PP    I  +WVF+ KADG FK R+V QGW+Q  G+DCGS++APVCR++S R++  +    +      DV  AFL                              N  L  +  +P     TI             SDPCVY    N   I L+L+VDD+L+ G     +  V  +L  +F  TD GE SL+LGME+ R++   TL +SQ+ Y  SIL+RF +S   PT  P   ++ S     D+LLD   T++Y  I  SL ++ Q  R+DI ++  Q AR M+ P++ H+VA K  LR+L G  D SITY     +L  +S++++       +ST+  +   AN  + F S LQ +TA ST E EL+A A    + V+   +  ELG      Q  V+ DN   LH   N ++SSR+KH A+RF  +R+     ++ I ++ + D LADI T+H  +  F  L
Sbjct: 1192 PPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 1.500e-67
Identity = 149/438 (34.02%), Postives = 228/438 (52.05%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNAKL---------------RSMGSTPTI-----------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILT 1185
            P    ++G ++VF+   DG FKARLVV G+ Q  G D G S+APVCR+   R+  A+    +W IY  DV  AFLNA                  S    P +                 SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD GEV  ILG++V R+    TL +SQ+ YV ++L+RF M   NP                D +L     K Y ++  S+  L QCTRFD+ ++ +Q ++  S P Q ++ A K  +R+LRG P + I Y   +  L  ++++S+       RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+   ++ VY+     EL  +   S  ++SD+ GAL +A N+ +S R+K  A+R+  +R+     Q+ + H  S  QLAD +T
Sbjct:   19 PKGEKILGTKFVFKKDLDGRFKARLVVGGYRQEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP----------------DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRELVLLGQITLHHRPSEHQLADXMT 440          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 4.770e-65
Identity = 159/470 (33.83%), Postives = 233/470 (49.57%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNAKL----------------------------RSM---------------------GSTPTISDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVR---NKTLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
            P +  V+G R+VF+ KAD  FK RLVVQG  Q  GID G  +A VCR+ S R+  A+A  + W ++  DV VAFL   +                            RS+                     G  PT SDPCVY  GS  T ++L+L+V+DIL++G    L+ D+  +L ++F  TD GEV LILGM+V R   N TL +SQ  YV SIL+   M + NP                D LL AA +K Y +I  SL +L QC R+D  ++V Q  R  S P + H  A K  LR++RG PD+ I +   +  +  ++++S+       +STTG               LQ        E+EL A++   K+  YL  +   L  + +    ++SD+ G L LAAN+ +SSR+KH A+RF  L++  + + + + H+ +   LADI T+H +R  F  +  +I
Sbjct:  421 PKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP--------------ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTG---------------LQV-------ESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQI 854          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A2N9FUY1_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FUY1_FAGSY)

HSP 1 Score: 217 bits (553), Expect = 1.570e-61
Identity = 146/438 (33.33%), Postives = 228/438 (52.05%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVK--ADGI---FKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNAKL------------RSMGSTPTI--SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRN---KTLQLSQDKYVPSILDRFNMSSVNPTKRPDIK----TDPSAASNGDSLLDAAATKEYHAI-SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQINS---CQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTF 1209
            PP H  IG +WV +VK  ADG    +KARLV +G++Q  GID   +F+PV R  S RL+L++   +D  ++  DV+ AFLN +L             + G    +   D C+Y K S  + ++LSL+VDDIL+ G     ++     L + F   D GE + +LG+++ R+   K L LSQ  Y+  IL+RF+M +  P   P  K    +      N +     +      AI SL +   CTR DICF+V   +R+ S P   H  AVKR+LR+LRG  D ++ Y    L L GYS+A + +     +ST+G       G V + S+ Q   A ST E+E +A +A  ++ V+L    + LG+  ++     ++SD+  AL  A +  Y  ++KH  +R+  +RD     ++++ H+S+   +AD LT+   R  F
Sbjct:  110 PPGHKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKMIEEDHCMYLKRSKRSILILSLYVDDILLVGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIRSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLF 547          
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 1.950e-60
Identity = 144/437 (32.95%), Postives = 215/437 (49.20%), Query Frame = 1
Query:    1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------------------------KLRSMGSTPTISDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSK 1131
            P    ++G ++VF+ K DG FKA LVV G  Q  G D GSS+APVCR+ S R+   +    +W IY  DV VAFLNA                                                  L+  G   T  DPCVY   S +  ++L+++VDDIL+TG  D+ L+D   +L ++F  TD GEV  ILG++V R+    TL +SQ+ YV ++L+RF M   NP        + S     D +L     K Y ++  S+ +L QCTRFD+ ++ +Q ++  S P Q +L A K VLR+LRG P + I Y   +  L   +++S+       RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+   ++ +Y+     E   +      ++SD+ GAL +A N             F   R W+R++
Sbjct:  120 PKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAGN---------XIFLFQVSRGWSRTE 546          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF89_9PHAE9.740e-7534.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.460e-7433.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE4.940e-7434.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.340e-7333.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE1.570e-7237.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.400e-7035.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK0_9PHAE1.500e-6734.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE4.770e-6533.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9FUY1_FAGSY1.570e-6133.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDU8_9PHAE1.950e-6032.95Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18256contigH-paniculata_contig18256:3817..5193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue7.8e-31
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.1543
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1230
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18256.4452.1prot_H-paniculata_contig18256.4452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18256 4261..5169 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929418.6532302-UTR-H-paniculata_contig18256:3816..42601622929418.6532302-UTR-H-paniculata_contig18256:3816..4260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18256 3817..4260 -
1691480853.1206079-UTR-H-paniculata_contig18256:3816..42601691480853.1206079-UTR-H-paniculata_contig18256:3816..4260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18256 3817..4260 -
1622929418.697883-UTR-H-paniculata_contig18256:5169..51931622929418.697883-UTR-H-paniculata_contig18256:5169..5193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18256 5170..5193 -
1691480853.1471202-UTR-H-paniculata_contig18256:5169..51931691480853.1471202-UTR-H-paniculata_contig18256:5169..5193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18256 5170..5193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929418.6655023-CDS-H-paniculata_contig18256:4260..48121622929418.6655023-CDS-H-paniculata_contig18256:4260..4812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18256 4261..4812 -
1691480853.130962-CDS-H-paniculata_contig18256:4260..48121691480853.130962-CDS-H-paniculata_contig18256:4260..4812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18256 4261..4812 -
1622929418.6838157-CDS-H-paniculata_contig18256:4959..51691622929418.6838157-CDS-H-paniculata_contig18256:4959..5169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18256 4960..5169 -
1691480853.1392646-CDS-H-paniculata_contig18256:4959..51691691480853.1392646-CDS-H-paniculata_contig18256:4959..5169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18256 4960..5169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18256.4452.1

>prot_H-paniculata_contig18256.4452.1 ID=prot_H-paniculata_contig18256.4452.1|Name=mRNA_H-paniculata_contig18256.4452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
MRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALA
TAKDWTIYARDVQVAFLNAKLRSMGSTPTISDPCVYSKGSNHTYIMLSLF
VDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNKTLQLS
QDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI
SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISI
TYS*
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mRNA from alignment at H-paniculata_contig18256:3817..5193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18256.4452.1 ID=mRNA_H-paniculata_contig18256.4452.1|Name=mRNA_H-paniculata_contig18256.4452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-paniculata_contig18256:3817..5193- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCAACCACACAGTCATTGGCATGCGCTGGGTGTTTGAAGTGAAAGC AGACGGAATATTCAAGGCTCGACTCGTGGTACAAGGCTGGTCGCAAAATC ACGGAATAGACTGCGGGAGCAGTTTTGCACCAGTATGCAGACTGGAGAGC CAGAGACTGCTGCTCGCGCTTGCAACAGCAAAGGATTGGACAATCTACGC ACGTGATGTTCAAGTTGCTTTTCTAAACGCTAAAGTGAAGGAAAGCATCT TCTGCGAATAAGCACCCGGCTTCGAGAAGATGGACTCCACTACAGGACAA CCCTACGTGATGAGTTTAAAGAGATCAGTATATGGGTTGCGCGAAAGCCC AAATGTTTGGAACCATACCGTCGACAACGAGCTGAGGAGCATGGGGTCTA CACCGACCATCTCGGATCCTTGTGTGTACAGTAAAGGAAGCAACCACACC TACATCATGCTCAGCCTTTTCGTCGACGACATCCTTGTTACAGGACCAAC GGACAAACTACTAATGGATGTTTGCTACCAACTAATGAACAAGTTCACCA CCACGGACTTTGGAGAAGTATCGCTTATTCTTGGCATGGAGGTAGTGCGC AACAAAACCCTTCAGCTATCACAGGACAAGTACGTACCGTCCATTTTGGA CAGGTTCAACATGTCATCGGTAAACCCAACCAAGAGGCCAGATATTAAAA CGGACCCAAGCGCTGCTAGTAATGGTGACAGCCTACTGGATGCAGCAGCC ACGAAGGAGTATCACGCCATAAGTCTCTTCTTCCTCACTCAGTGTACAAG ATTCGACATCTGCTTCAGCGTCATCCAAGCAGCACGATTCATGAGTGCAC CAACCCAACAGCACTTGGTGGCAGTAAAGCGTGTTCTTCGCTTTTTGCGG GGCTACCCTGATATTTCGATCACCTACAGTTGAAGCAAATTGGAATTGGT CGGCTACTCTAATGCATCGTACTGCACAAGGTCTACAACGGGCACGATAC TCTTCTCTGCTAACGGATTGGTACACTTCTCGTCTCGACTTCAGAAGGTT ACAGCTACAAGCACAAATGAGACGGAACTCATCGCACTAGCTGCATGCAC TAAACAGGGTGTTTACCTTCTAGGGATCTGCAGAGAACTTGGGCTTCAGA TCAACAGCTGTCAAGTCCATAGTGACAACAGAGGTGCCCTCCACCTCGCA GCAAATAGCAATTACTCCAGCCGCAGCAAACATGGAGCCATCAGATTTTC AGCACTTCGTGACTGGACCAGGAGCAAGCAGCTCGTCATCGACCATCTTT CAAGTTCAGACCAGCTAGCCGACATCCTCACTAGGCACTGTGAGAGATTG ACGTTTGCTCGACTATGCCGCGAAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig18256:3817..5193-

>mRNA_H-paniculata_contig18256.4452.1 ID=mRNA_H-paniculata_contig18256.4452.1|Name=mRNA_H-paniculata_contig18256.4452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig18256:3817..5193- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTGGGTGTTTGAAGTGAAAGCAGACGGAATATTCAAGGCTCGACT
CGTGGTACAAGGCTGGTCGCAAAATCACGGAATAGACTGCGGGAGCAGTT
TTGCACCAGTATGCAGACTGGAGAGCCAGAGACTGCTGCTCGCGCTTGCA
ACAGCAAAGGATTGGACAATCTACGCACGTGATGTTCAAGTTGCTTTTCT
AAACGCTAAAATGCGCTGGGTGTTTGAAGTGAAAGCAGACGGAATATTCA
AGGCTCGACTCGTGGTACAAGGCTGGTCGCAAAATCACGGAATAGACTGC
GGGAGCAGTTTTGCACCAGTATGCAGACTGGAGAGCCAGAGACTGCTGCT
CGCGCTTGCAACAGCAAAGGATTGGACAATCTACGCACGTGATGTTCAAG
TTGCTTTTCTAAACGCTAAACTGAGGAGCATGGGGTCTACACCGACCATC
TCGGATCCTTGTGTGTACAGTAAAGGAAGCAACCACACCTACATCATGCT
CAGCCTTTTCGTCGACGACATCCTTGTTACAGGACCAACGGACAAACTAC
TAATGGATGTTTGCTACCAACTAATGAACAAGTTCACCACCACGGACTTT
GGAGAAGTATCGCTTATTCTTGGCATGGAGGTAGTGCGCAACAAAACCCT
TCAGCTATCACAGGACAAGTACGTACCGTCCATTTTGGACAGGTTCAACA
TGTCATCGGTAAACCCAACCAAGAGGCCAGATATTAAAACGGACCCAAGC
GCTGCTAGTAATGGTGACAGCCTACTGGATGCAGCAGCCACGAAGGAGTA
TCACGCCATAAGTCTCTTCTTCCTCACTCAGTGTACAAGATTCGACATCT
GCTTCAGCGTCATCCAAGCAGCACGATTCATGAGTGCACCAACCCAACAG
CACTTGGTGGCAGTAAAGCGTGTTCTTCGCTTTTTGCGGGGCTACCCTGA
TATTTCGATCACCTACAGTTGACTGAGGAGCATGGGGTCTACACCGACCA
TCTCGGATCCTTGTGTGTACAGTAAAGGAAGCAACCACACCTACATCATG
CTCAGCCTTTTCGTCGACGACATCCTTGTTACAGGACCAACGGACAAACT
ACTAATGGATGTTTGCTACCAACTAATGAACAAGTTCACCACCACGGACT
TTGGAGAAGTATCGCTTATTCTTGGCATGGAGGTAGTGCGCAACAAAACC
CTTCAGCTATCACAGGACAAGTACGTACCGTCCATTTTGGACAGGTTCAA
CATGTCATCGGTAAACCCAACCAAGAGGCCAGATATTAAAACGGACCCAA
GCGCTGCTAGTAATGGTGACAGCCTACTGGATGCAGCAGCCACGAAGGAG
TATCACGCCATAAGTCTCTTCTTCCTCACTCAGTGTACAAGATTCGACAT
CTGCTTCAGCGTCATCCAAGCAGCACGATTCATGAGTGCACCAACCCAAC
AGCACTTGGTGGCAGTAAAGCGTGTTCTTCGCTTTTTGCGGGGCTACCCT
GATATTTCGATCACCTACAGTTGA
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