mRNA_H-paniculata_contig18216.4433.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18216.4433.1
Unique NamemRNA_H-paniculata_contig18216.4433.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A2G9H6K9_9LAMI (DNA polymerase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H6K9_9LAMI)

HSP 1 Score: 62.8 bits (151), Expect = 9.870e-10
Identity = 26/70 (37.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEE 210
            L ++Y  +G++ R+ SY +A +++  LP ++ +A Q++H+PGIGK + ++I EI+ TGKL +L+   ++E
Sbjct:  220 LIDIYRALGDDRRSFSYHKAITVIEKLPFKIESADQVKHLPGIGKSLQDHIQEIVNTGKLSKLEHFEKDE 289
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BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A022QLW0_ERYGU (DNA polymerase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QLW0_ERYGU)

HSP 1 Score: 62.0 bits (149), Expect = 1.840e-9
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEE 210
            L ++Y  +G+  R+ SY +A  ++  LP R+ +A Q++H+PGIGK + ++I EI+ TGKL +L+    +E
Sbjct:  215 LIDIYRALGDERRSFSYYKAIPVIEKLPFRIESADQVKHLPGIGKSLQDHIQEIVNTGKLSKLEHFENDE 284
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BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A2Z7BVJ5_9LAMI (DNA polymerase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BVJ5_9LAMI)

HSP 1 Score: 61.6 bits (148), Expect = 2.520e-9
Identity = 26/70 (37.14%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEE 210
            L ++Y  +G++ R+ SY +A  ++  LP R+ +A +++H+PGIGK + ++I EI+ TGKL +L+   ++E
Sbjct:  217 LIDIYRALGDDRRSFSYYKAIPVIEKLPFRIESADEVKHLPGIGKSLQDHIQEIVNTGKLSKLEHFEKDE 286
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BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A4D9BPL1_SALSN (DNA polymerase n=4 Tax=Salvia TaxID=21880 RepID=A0A4D9BPL1_SALSN)

HSP 1 Score: 61.2 bits (147), Expect = 3.470e-9
Identity = 27/76 (35.53%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEEMNVVCQ 228
            L ++Y  +G + R+ SY +A  ++  LP ++ +A Q++H+PGIGK + ++I EI+ TG+L +L+   ++E   +CQ
Sbjct:  225 LIDIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKHLPGIGKSLQDHIQEIVNTGRLSKLEHFEKDEK--ICQ 298
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BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: UPI000643401E (DNA polymerase lambda isoform X2 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI000643401E)

HSP 1 Score: 59.7 bits (143), Expect = 1.170e-8
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRL 198
            L++ Y V G+  RALSY +A + L+S  + + + ++  H+PGIGK++AE I+EILE+G L +LD +
Sbjct:   93 LAKAYSVQGDKWRALSYAKAINALKSFHKAVTSYQEACHIPGIGKRMAEKIEEILESGHLRKLDHI 158
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BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A328E9F3_9ASTE (DNA polymerase n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328E9F3_9ASTE)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-8
Identity = 26/70 (37.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEE 210
            L  +Y  +G++ R+ SY +A S++  LP +++   Q+RH+P IGK + ++I EI+ TGKL +L+    +E
Sbjct:   34 LVSIYRALGDDRRSFSYNKAISVIEKLPFKIVNVDQVRHLPSIGKSMQDHIMEIVNTGKLSKLENFENDE 103
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BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A484MY99_9ASTE (DNA polymerase n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MY99_9ASTE)

HSP 1 Score: 58.9 bits (141), Expect = 2.230e-8
Identity = 26/70 (37.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEE 210
            L  +Y  +G++ R+ SY +A S++  LP +++   Q+RH+P IGK + ++I EI+ TGKL +L+    +E
Sbjct:  210 LVSIYRALGDDRRSFSYNKAISVIEKLPFKIVNVDQVRHLPSIGKSMQDHIMEIVNTGKLSKLENFENDE 279
[Close]
BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A6A4L9A0_9ERIC (DNA polymerase (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4L9A0_9ERIC)

HSP 1 Score: 58.5 bits (140), Expect = 3.070e-8
Identity = 25/70 (35.71%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEE 210
            L  +Y  +G++ R+ SY +A +++  LP R+ +  Q++H+P IGK + ++I EI+ TGKL +L+    +E
Sbjct:  225 LMNIYRALGDDRRSFSYSKAIAVIEKLPFRIESVDQVKHLPAIGKSMQDHIQEIVNTGKLSKLEHFETDE 294
[Close]
BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A833VN95_9POAL (DNA polymerase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VN95_9POAL)

HSP 1 Score: 58.2 bits (139), Expect = 4.200e-8
Identity = 25/70 (35.71%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRLRQEE 210
            L  +Y  +G++ R+ SY +A  ++  LP ++ +  Q++H+P IGK + ++IDEI+ TGKL +L+    +E
Sbjct:  226 LINIYRALGDDRRSFSYYKAIPVIEKLPFKIESVDQVKHLPAIGKSLQDHIDEIVNTGKLSKLEYFENDE 295
[Close]
BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Match: A0A8J6DZX3_GALPY (DNA polymerase n=5 Tax=Talpidae TaxID=9373 RepID=A0A8J6DZX3_GALPY)

HSP 1 Score: 58.2 bits (139), Expect = 4.220e-8
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAENIDEILETGKLERLDRL 198
            L++ Y V G+  RAL Y +A + L+S  + + + ++  H+PGIGK++AE I+EILE+G L +LD +
Sbjct:  277 LAKAYSVQGDKWRALGYAKAINALKSFHKAVTSYQEACHIPGIGKRMAEKIEEILESGHLRKLDHI 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18216.4433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G9H6K9_9LAMI9.870e-1037.14DNA polymerase n=1 Tax=Handroanthus impetiginosus ... [more]
A0A022QLW0_ERYGU1.840e-938.57DNA polymerase n=1 Tax=Erythranthe guttata TaxID=4... [more]
A0A2Z7BVJ5_9LAMI2.520e-937.14DNA polymerase n=1 Tax=Dorcoceras hygrometricum Ta... [more]
A0A4D9BPL1_SALSN3.470e-935.53DNA polymerase n=4 Tax=Salvia TaxID=21880 RepID=A0... [more]
UPI000643401E1.170e-843.94DNA polymerase lambda isoform X2 n=1 Tax=Condylura... [more]
A0A328E9F3_9ASTE1.240e-837.14DNA polymerase n=1 Tax=Cuscuta australis TaxID=267... [more]
A0A484MY99_9ASTE2.230e-837.14DNA polymerase n=1 Tax=Cuscuta campestris TaxID=13... [more]
A0A6A4L9A0_9ERIC3.070e-835.71DNA polymerase (Fragment) n=2 Tax=Rhododendron Tax... [more]
A0A833VN95_9POAL4.200e-835.71DNA polymerase n=1 Tax=Carex littledalei TaxID=544... [more]
A0A8J6DZX3_GALPY4.220e-842.42DNA polymerase n=5 Tax=Talpidae TaxID=9373 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18216contigH-paniculata_contig18216:2744..3710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D8LNK4
Preferred nameDNTT
KEGG koko:K00977,ko:K03512,ko:K03513,ko:K06636,ko:K10981
KEGG Pathwayko03410,ko03450,ko04110,ko04111,ko04113,ko04114,ko04640,map03410,map03450,map04110,map04111,map04113,map04114,map04640
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000726,GO:0000731,GO:0000785,GO:0000790,GO:0000791,GO:0001775,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002566,GO:0003674,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0003912,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006281,GO:0006284,GO:0006287,GO:0006301,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016070,GO:0016363,GO:0016445,GO:0016446,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019985,GO:0022402,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0031667,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0033198,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0042113,GO:0042221,GO:0042276,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045321,GO:0046483,GO:0046649,GO:0046683,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051575,GO:0051716,GO:0061674,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901700,GO:1902969,GO:1903047,GO:1990506
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.31,2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03400
Exons3
Model size231
Cds size228
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18216.4433.1prot_H-paniculata_contig18216.4433.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18216 2745..3710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929416.1131628-CDS-H-paniculata_contig18216:2744..27681622929416.1131628-CDS-H-paniculata_contig18216:2744..2768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18216 2745..2768 -
1691480852.0104606-CDS-H-paniculata_contig18216:2744..27681691480852.0104606-CDS-H-paniculata_contig18216:2744..2768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18216 2745..2768 -
1622929416.124002-CDS-H-paniculata_contig18216:2953..30681622929416.124002-CDS-H-paniculata_contig18216:2953..3068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18216 2954..3068 -
1691480852.02952-CDS-H-paniculata_contig18216:2953..30681691480852.02952-CDS-H-paniculata_contig18216:2953..3068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18216 2954..3068 -
1622929416.139176-CDS-H-paniculata_contig18216:3621..37101622929416.139176-CDS-H-paniculata_contig18216:3621..3710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18216 3622..3710 -
1691480852.0407224-CDS-H-paniculata_contig18216:3621..37101691480852.0407224-CDS-H-paniculata_contig18216:3621..3710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18216 3622..3710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18216.4433.1

>prot_H-paniculata_contig18216.4433.1 ID=prot_H-paniculata_contig18216.4433.1|Name=mRNA_H-paniculata_contig18216.4433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
LSELYDVVGNNERALSYQRAASILRSLPRRLLAAKQIRHVPGIGKQIAEN
IDEILETGKLERLDRLRQEEMNVVCQ
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mRNA from alignment at H-paniculata_contig18216:2744..3710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18216.4433.1 ID=mRNA_H-paniculata_contig18216.4433.1|Name=mRNA_H-paniculata_contig18216.4433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=967bp|location=Sequence derived from alignment at H-paniculata_contig18216:2744..3710- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGCGAGCTCTACGACGTGGTTGGAAATAACGAGCGTGCGCTTTCCTA
CCAGCGAGCGGCGTCTATCTTGCGATCTCTGCCTCGGAGGTACGACTTTG
CCGTAAAGATAGCGAAGTATCTAGGCCATTGGCAGTAGTAAGGCCTATAC
TCTGGGGTATTCGAAATTTGAAGGTTAAAGTTAATTCAGAGTCGGAATAA
GTCGGATTCCGCCTATTTGCGACCTCTGCTTATTTGCAAGTGGGTCTAAT
GTACGTACCACAGTTCAGAGTACAAGAGACGTTGGAAAAACAACAGAAAC
CGTTGTGTTATATCCGATTTTTTCCAGATGACAACGAGTTTTAAGAAGGG
GGTTTTGAAAAAAATAATGTACGAAGACAGGCTTCATCCATCACACCCCA
AACAAGTGGAAATCCCATTTGCTTGTTTTTTCCGCATGCGCTTTCCCAGC
ACCCACCCCTACTTATCTACCGCGAAACGTTGCGCATGACAAACGCTCTC
TCCGTTCTTACTGTCGTTGTCATTGAAGCACTTCGTCAGCTGTTTCTGCC
GAAATACCTACCGGCTAAACCCCGAAATGGTTACTCAGAATGACGTTCTT
TTTTGTTTGAAGACACCAAGTAAAATTAAAATTAAATAACAGGTTACTAG
CGGCGAAGCAGATACGGCATGTGCCAGGAATCGGCAAACAGATAGCGGAA
AACATCGACGAAATTCTTGAGACGGGAAAACTGGAACGATTGGATAGGTT
ACGGCAGGCGAGTGGAAGGAAGGAAGGAGGGGGGGTGAATCAAGATGTAT
CACAGGTCTTATTGTCATTATTCATGGAAGCGTGTTTATTTGCAGGGAGC
AAGGGATTTGTTACCGCCGGTCACCTGGAATTGTGCTTCCTGGCGAGTTT
TTTCTTGTGTGTGTGTATTTTTTTACACATGCTTTTTTTCAGGAGGAGAT
GAACGTTGTGTGCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18216:2744..3710-

>mRNA_H-paniculata_contig18216.4433.1 ID=mRNA_H-paniculata_contig18216.4433.1|Name=mRNA_H-paniculata_contig18216.4433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig18216:2744..3710- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGCGAGCTCTACGACGTGGTTGGAAATAACGAGCGTGCGCTTTCCTA
CCAGCGAGCGGCGTCTATCTTGCGATCTCTGCCTCGGAGTTGAGCGAGCT
CTACGACGTGGTTGGAAATAACGAGCGTGCGCTTTCCTACCAGCGAGCGG
CGTCTATCTTGCGATCTCTGCCTCGGAGGTTACTAGCGGCGAAGCAGATA
CGGCATGTGCCAGGAATCGGCAAACAGATAGCGGAAAACATCGACGAAAT
TCTTGAGACGGGAAAACTGGAACGATTGGATAGGTTACGGCAGGTTACTA
GCGGCGAAGCAGATACGGCATGTGCCAGGAATCGGCAAACAGATAGCGGA
AAACATCGACGAAATTCTTGAGACGGGAAAACTGGAACGATTGGATAGGT
TACGGCAGGAGGAGATGAACGTTGTGTGCCAAGAGGAGATGAACGTTGTG
TGCCAA
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