mRNA_H-paniculata_contig1821.4429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1821.4429.1
Unique NamemRNA_H-paniculata_contig1821.4429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1821.4429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1821contigH-paniculata_contig1821:15539..16915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size265
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1821.4429.1prot_H-paniculata_contig1821.4429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1821 15539..16900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.867703-CDS-H-paniculata_contig1821:15538..157001622929415.867703-CDS-H-paniculata_contig1821:15538..15700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1821 15539..15700 -
1691480851.8956726-CDS-H-paniculata_contig1821:15538..157001691480851.8956726-CDS-H-paniculata_contig1821:15538..15700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1821 15539..15700 -
1622929415.877719-CDS-H-paniculata_contig1821:16813..169001622929415.877719-CDS-H-paniculata_contig1821:16813..16900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1821 16814..16900 -
1691480851.905854-CDS-H-paniculata_contig1821:16813..169001691480851.905854-CDS-H-paniculata_contig1821:16813..16900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1821 16814..16900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.8872426-UTR-H-paniculata_contig1821:16900..169151622929415.8872426-UTR-H-paniculata_contig1821:16900..16915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1821 16901..16915 -
1691480851.9153435-UTR-H-paniculata_contig1821:16900..169151691480851.9153435-UTR-H-paniculata_contig1821:16900..16915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1821 16901..16915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1821.4429.1

>prot_H-paniculata_contig1821.4429.1 ID=prot_H-paniculata_contig1821.4429.1|Name=mRNA_H-paniculata_contig1821.4429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MFARMGNLGTTILSRAMWPKRQQLLHEKEVVAILEAVLHKDPTKRLKLEQ
LDCLLSHGSLWEDEAPTASSSAGADVKPSSMEE
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mRNA from alignment at H-paniculata_contig1821:15539..16915-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1821.4429.1 ID=mRNA_H-paniculata_contig1821.4429.1|Name=mRNA_H-paniculata_contig1821.4429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-paniculata_contig1821:15539..16915- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAACCACTTGGCGATGTTTGCGAGGATGGGGAACCTTGGCACCACGAT
TCTTTCTCGAGCGATGTGGCCGAAGCGTCAACAACTGCTTCACGAAAAAG
AAGTGAGTATGTCGTTAGTACTGGTACGTATGCGCACGCGATTTCAGGAC
AAGCCATTGCGCGCGACTCGGTTCAGTTGATGACACCATATGTTTTTCTC
GTTTACCCTGATAGCGTTTGTGTTTCGTTTCTTCACCGCCCCTGGTATGG
CGGATGATTCTCCGGAGATACATTCGAAGTACTACATCCTAACCTGATCC
TGGGTAGAGCCAATGCAATCCTGTATATCTGTGCCAATAACCTCCTGGTC
TATATACGTTAAACTCTCGCGCGTGCGTGCGAAAAACCCCAGCAACACGA
CACACTAAAACTGGTCGTTCGCTCTGGCCAGTGCGACACAAAACCTCGCA
CAATAAGTAGCACATCTACACCACTCTGAGCCTACATGTAATTGGCTTTT
GCATATTTTGCAGCGTATCTTCTACTGAGGTGACGAGAGTTTTGTGCCCT
TTCCTTTAGTAGACGTTGGGCTGAATCACGAGGACTTGCTCCAAAACTGA
TGTTTTCGGTTTTCGCCAGCTGGACTCCCCACAGCCACACCCATCGCAAC
ATTAAACAGAGCTCGCTCGCGCGGAGTGGGTCTTGAAGGCTTGCTAATCG
TCTGCTGATCGTGTCAGCCGCTGGGAGCGTCGTCCAGACGCGGAACAGAA
ATAATCTCATAAGTTCGGAGAAGGGAGGATTGTTTGCGGAGTTACTCAGT
GGCAGTAACAGGGGTATACTATAGCCTTGAGTGTCACGCTATCTCCTTGC
TGTGGAAACCGGTCGATGTTATCCAGGTGTTATCTATCCCCTGGCCATCC
CAGGGATTCGTTTTTAACCCCCCCAATGAAAGACCGACATTACATAGGGT
TTCAGAAAGCTTCAAGCTTCTCAAGCAGCTAAAGCTACAGCGCCACGTAC
AGATTCCTTTATTCTTAAATATTAATGAACTACATTATGCATATTCCAAA
ACCTGAAGTTCTTTCGGCTCAGACTCAGAATGGTAGCTAGGACGGCTATT
TTTTGTGGGGTGTTTTTTTGCTCCTCTCCCAGTTTTGAAGACTCTAGAAA
GCATTACCAGAGTAGATTTCAATACACCAGGTATCGTTCTTCTTCAATAT
TGCATTGTATGACAGGTGGTGGCCATACTCGAGGCTGTTCTGCACAAGGA
CCCCACCAAGCGTCTCAAGCTCGAGCAGTTGGACTGTCTTCTATCGCACG
GGAGCCTGTGGGAAGACGAGGCCCCCACGGCGTCCAGCTCGGCCGGCGCA
GACGTCAAGCCTTCTTCCATGGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1821:15539..16915-

>mRNA_H-paniculata_contig1821.4429.1 ID=mRNA_H-paniculata_contig1821.4429.1|Name=mRNA_H-paniculata_contig1821.4429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig1821:15539..16915- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGCGAGGATGGGGAACCTTGGCACCACGATTCTTTCTCGAGCGAT
GTGGCCGAAGCGTCAACAACTGCTTCACGAAAAAGAAATGTTTGCGAGGA
TGGGGAACCTTGGCACCACGATTCTTTCTCGAGCGATGTGGCCGAAGCGT
CAACAACTGCTTCACGAAAAAGAAGTGGTGGCCATACTCGAGGCTGTTCT
GCACAAGGACCCCACCAAGCGTCTCAAGCTCGAGCAGTTGGACTGTCTTC
TATCGCACGGGAGCCTGTGGGAAGACGAGGCCCCCACGGCGTCCAGCTCG
GCCGGCGCAGACGTCAAGCCTTCTTCCATGGAGGAGGTGGTGGCCATACT
CGAGGCTGTTCTGCACAAGGACCCCACCAAGCGTCTCAAGCTCGAGCAGT
TGGACTGTCTTCTATCGCACGGGAGCCTGTGGGAAGACGAGGCCCCCACG
GCGTCCAGCTCGGCCGGCGCAGACGTCAAGCCTTCTTCCATGGAGGAG
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