mRNA_H-paniculata_contig18169.4411.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18169.4411.1
Unique NamemRNA_H-paniculata_contig18169.4411.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.350e-22
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            L+ DKG E   + F +YCLQ G  LEYAST TPQQ+G +ER GRTLAAMVRC+L  SGL +FLW +LM T A++ N   H+A+
Sbjct:   59 LRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAAL 141
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.500e-22
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 3 
Query:  135 ALGGDS*RLPHRALKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            ALGG         L+ DK  EY    F +YCLQ G+ LEYAST TPQQIG +ER GRTLAAMVRC+L  SGL +FLW  LM T  ++ N   H+A+
Sbjct:  319 ALGGFRYVSKLDRLRGDKEAEYTCLEFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAAL 414
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.540e-22
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSA 419
            ++ADKGGEY    F  YC   G+ L +AST TPQ+IG +ER+GRTLA MVRC+LA SGL  FLW EL  T +++ N + HSA
Sbjct:  392 VRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSA 473
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.720e-18
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:  171 ALKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            A++ DKGGE     F DYC  + + LEYA+T TPQQIG+SER G+TLA + RC+L        +W ELM T A++ N + HSA+
Sbjct:  366 AIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 449
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.040e-17
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            ++ DKGGE     F DYC  + + LEYA+T TPQQIG+SER G+TLA + RC+L        +W ELM T A++ N + HSA+
Sbjct:   37 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 119
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.200e-17
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            ++ DKGGE     F DYC  + + LEYA+T TPQQIG+SER G+TLA + RC+L        +W ELM T A++ N + HSA+
Sbjct:  495 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 577
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.290e-17
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            ++ DKGGE     F DYC  + + LEYA+T TPQQIG+SER G+TLA + RC+L        +W ELM T A++ N + HSA+
Sbjct:  171 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.390e-17
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            ++ DKGGE     F DYC  + + LEYA+T TPQQIG+SER G+TLA + RC+L        +W ELM T A++ N + HSA+
Sbjct:  171 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.390e-17
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            ++ DKGGE     F DYC  + + LEYA+T TPQQIG+SER G+TLA + RC+L        +W ELM T A++ N + HSA+
Sbjct:  171 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.390e-17
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 3 
Query:  174 LKADKGGEYIHKVFEDYCLQTGMSLEYASTTTPQQIGMSERVGRTLAAMVRCMLAHSGLIRFLWRELMFTGAFVGNTASHSAI 422
            ++ DKGGE     F +YC  + + LEYA+T TPQQIG+SER G+TLA + RC+L        +W ELM T A++ N +SHSA+
Sbjct:  512 IRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSAL 594
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18169.4411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.350e-2257.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWF9_9PHAE1.500e-2254.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE6.540e-2256.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSL6_9PHAE9.720e-1848.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5H2_9PHAE3.040e-1748.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE3.200e-1748.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE3.290e-1748.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE3.390e-1748.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE3.390e-1748.19Integrase catalytic domain-containing protein n=11... [more]
A0A6H5J8P7_9PHAE3.390e-1748.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18169contigH-paniculata_contig18169:4444..4865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.6933668-CDS-H-paniculata_contig18169:4443..47671622929412.6933668-CDS-H-paniculata_contig18169:4443..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18169 4444..4767 +
1691480850.3688622-CDS-H-paniculata_contig18169:4443..47671691480850.3688622-CDS-H-paniculata_contig18169:4443..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18169 4444..4767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.7129068-UTR-H-paniculata_contig18169:4767..48651622929412.7129068-UTR-H-paniculata_contig18169:4767..4865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18169 4768..4865 +
1691480850.3778439-UTR-H-paniculata_contig18169:4767..48651691480850.3778439-UTR-H-paniculata_contig18169:4767..4865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18169 4768..4865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18169.4411.1prot_H-paniculata_contig18169.4411.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18169 4444..4767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18169.4411.1

>prot_H-paniculata_contig18169.4411.1 ID=prot_H-paniculata_contig18169.4411.1|Name=mRNA_H-paniculata_contig18169.4411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MGAITPEALGGFKYVSKISDEYTKWTETYLLKSKGDTLSAFQSFVHSVVI
PSGFRTERLRLTKEANISTKSSKTTAFRLGCHSSTPAPPRHNKSACPSAS
EELLRLW*
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mRNA from alignment at H-paniculata_contig18169:4444..4865+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18169.4411.1 ID=mRNA_H-paniculata_contig18169.4411.1|Name=mRNA_H-paniculata_contig18169.4411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=422bp|location=Sequence derived from alignment at H-paniculata_contig18169:4444..4865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGCCATCACACCGGAGGCACTCGGGGGCTTCAAGTACGTTAGCAA
GATCTCCGACGAATACACCAAATGGACCGAAACCTACCTGTTGAAGTCCA
AAGGCGACACCCTCAGCGCATTCCAGTCGTTCGTGCACTCGGTGGTGATT
CCTAGCGGCTTCCGCACCGAGCGCTTAAGGCTGACAAAGGAGGCGAATAT
ATCCACAAAGTCTTCGAAGACTACTGCCTTCAGACTGGGATGTCACTCGA
GTACGCCAGCACCACCACGCCACAACAAATCGGCATGTCCGAGCGCGTCG
GAAGAACTCTTGCGGCTATGGTGAGATGCATGCTTGCCCACAGCGGACTG
ATAAGGTTTCTATGGAGAGAATTGATGTTCACAGGCGCATTCGTGGGAAA
CACGGCATCGCACTCCGCGATC
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Coding sequence (CDS) from alignment at H-paniculata_contig18169:4444..4865+

>mRNA_H-paniculata_contig18169.4411.1 ID=mRNA_H-paniculata_contig18169.4411.1|Name=mRNA_H-paniculata_contig18169.4411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig18169:4444..4865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGCCATCACACCGGAGGCACTCGGGGGCTTCAAGTACGTTAGCAA
GATCTCCGACGAATACACCAAATGGACCGAAACCTACCTGTTGAAGTCCA
AAGGCGACACCCTCAGCGCATTCCAGTCGTTCGTGCACTCGGTGGTGATT
CCTAGCGGCTTCCGCACCGAGCGCTTAAGGCTGACAAAGGAGGCGAATAT
ATCCACAAAGTCTTCGAAGACTACTGCCTTCAGACTGGGATGTCACTCGA
GTACGCCAGCACCACCACGCCACAACAAATCGGCATGTCCGAGCGCGTCG
GAAGAACTCTTGCGGCTATGGTGAATGGGAGCCATCACACCGGAGGCACT
CGGGGGCTTCAAGTACGTTAGCAAGATCTCCGACGAATACACCAAATGGA
CCGAAACCTACCTGTTGAAGTCCAAAGGCGACACCCTCAGCGCATTCCAG
TCGTTCGTGCACTCGGTGGTGATTCCTAGCGGCTTCCGCACCGAGCGCTT
AAGGCTGACAAAGGAGGCGAATATATCCACAAAGTCTTCGAAGACTACTG
CCTTCAGACTGGGATGTCACTCGAGTACGCCAGCACCACCACGCCACAAC
AAATCGGCATGTCCGAGCGCGTCGGAAGAACTCTTGCGGCTATGGTGA
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