mRNA_H-paniculata_contig18139.4400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18139.4400.1
Unique NamemRNA_H-paniculata_contig18139.4400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 4.230e-52
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 1
Query:   19 QIGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFEE 321
            QIGDRQVNVR+YTAAFNLRG++Q+K VG MSGGERNRVHLAKVLK+GHNVLLLDEPTNDLDVDTLRSLE+AI  F G VLIVSHDRWFLDRVCSHTIAFE+
Sbjct:  411 QIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQGHNVLLLDEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFED 511          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.510e-50
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 1
Query:   19 QIGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFEE 321
            QIGDR+VNVR+YTAAFNLRG++Q+K VG MSGGERNRVHLAKVLK+GHNVLLLDEPTNDLDVDTLRSLE+AI  F G VLIVSHDRWFLDRVCSHTIAFE+
Sbjct:  584 QIGDRKVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQGHNVLLLDEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFED 684          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A7S2DH67_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DH67_9EUKA)

HSP 1 Score: 158 bits (400), Expect = 6.480e-47
Identity = 73/101 (72.28%), Postives = 88/101 (87.13%), Query Frame = 1
Query:   22 IGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFEEE 324
            +G R+VNVR+Y AAFNLRGS QEK VG +SGGER RVHLAK L+EG N+LLLDEP+NDLDVDTLRSLE+A+ DF G  +++SHDRWFLDRVC+HT+AFE +
Sbjct:   91 LGGREVNVRAYVAAFNLRGSMQEKSVGSLSGGERGRVHLAKTLREGCNLLLLDEPSNDLDVDTLRSLEEALTDFAGSAVVISHDRWFLDRVCTHTLAFEHD 191          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A2N2K314_9DELT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-10 TaxID=2013737 RepID=A0A2N2K314_9DELT)

HSP 1 Score: 155 bits (393), Expect = 1.470e-46
Identity = 69/101 (68.32%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   22 IGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFEEE 324
            IG RQ+N R+Y + FN  G+ Q+K+VG +SGGERNRVHLA++LKEG NVLLLDEPTNDLDV+TLR+LEDA+++F GCV+++SHDRWFLDR+C+H +AFE E
Sbjct:   21 IGSRQINSRAYVSRFNFSGTDQQKKVGTLSGGERNRVHLARMLKEGANVLLLDEPTNDLDVNTLRALEDALENFAGCVVVISHDRWFLDRICTHILAFEGE 121          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A6J6YDC8_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6YDC8_9ZZZZ)

HSP 1 Score: 153 bits (387), Expect = 9.390e-46
Identity = 67/100 (67.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:   19 QIGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFE 318
            ++G+R++N R+Y A+FN +GS Q+K+VGD+SGGERNRVHLAK+LK G NVLLLDEPTNDLDVDTLR+LED+++ F GC +++SHDRWFLDR+ +H +AFE
Sbjct:   13 KVGNREINGRAYVASFNFKGSDQQKKVGDLSGGERNRVHLAKLLKTGGNVLLLDEPTNDLDVDTLRALEDSLEAFPGCAVVISHDRWFLDRIATHVLAFE 112          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A537T6F4_9PROT (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537T6F4_9PROT)

HSP 1 Score: 152 bits (385), Expect = 1.390e-45
Identity = 68/102 (66.67%), Postives = 88/102 (86.27%), Query Frame = 1
Query:   13 LAQIGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFE 318
            + Q+G R+VN R+Y + FN +G+ Q+K+VG +SGGERNRVHLAK+LK G NVLLLDEPTNDLDVDTLR+LE+A++DF GC +I+SHDRWFLDR+ +H +AFE
Sbjct:    1 IIQLGKREVNSRAYCSNFNFKGADQQKKVGSLSGGERNRVHLAKMLKSGANVLLLDEPTNDLDVDTLRALEEALEDFAGCAVIISHDRWFLDRIATHILAFE 102          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: T0ZX24_9ZZZZ (ABC transporter, ATP-binding protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T0ZX24_9ZZZZ)

HSP 1 Score: 152 bits (385), Expect = 1.780e-45
Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 1
Query:   22 IGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFE 318
            IG+R+V+ R+Y A+F  +GS Q+KRVGD+SGGERNRVHLA VL+ G NVLLLDEPTNDLDVDTLR+LEDA++ F GC +++SHDRWFLDRV +H +AFE
Sbjct:   11 IGNREVHARAYVASFGFKGSDQQKRVGDLSGGERNRVHLASVLRRGGNVLLLDEPTNDLDVDTLRALEDALESFPGCAVVISHDRWFLDRVATHVLAFE 109          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A7S4BTX0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BTX0_CHRCT)

HSP 1 Score: 156 bits (395), Expect = 1.170e-44
Identity = 69/100 (69.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query:   25 GDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFEEE 324
            G+++VN+R+Y AAFNLRG+ QEK VG +SGGER RVHLAK L+ GHN+L+LDEP+NDLDVDTLRSLEDA++DF G  +++SHDRWFLDRVC HT+ FE +
Sbjct:  217 GEKEVNMRAYVAAFNLRGTTQEKLVGKLSGGERGRVHLAKTLRGGHNLLMLDEPSNDLDVDTLRSLEDALRDFAGSAIVISHDRWFLDRVCDHTLGFESD 316          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A535H6C1_9CHLR (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535H6C1_9CHLR)

HSP 1 Score: 152 bits (385), Expect = 1.210e-44
Identity = 71/100 (71.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:   19 QIGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFE 318
            QIG R  NVR+Y A+ N RG+ Q+K+VGD+SGGERNRVHLAK+L+ G NVLLLDEPTNDLDVDTLR+LE+AI DF GCV+++SHDRWFLDRV +H + FE
Sbjct:   75 QIGARTRNVRAYAASLNFRGADQQKKVGDLSGGERNRVHLAKLLRSGGNVLLLDEPTNDLDVDTLRALEEAILDFAGCVVVISHDRWFLDRVATHMLIFE 174          
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Match: A0A3C1GLT0_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A3C1GLT0_9BACT)

HSP 1 Score: 151 bits (381), Expect = 1.290e-44
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   22 IGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCSHTIAFEEE 324
            +G RQ+  R+Y A+FN +GS Q+KRVGD+SGGERNRVHLAK+L+   NV LLDEPTNDLDVDTLR+LEDA+  F GCVL++SHDRWFLDR+ +H +AFE++
Sbjct:   30 LGTRQIASRAYVASFNFKGSDQQKRVGDLSGGERNRVHLAKMLQSAGNVFLLDEPTNDLDVDTLRALEDALLGFAGCVLVISHDRWFLDRIATHMLAFEDD 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18139.4400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX01_ECTSI4.230e-5287.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQX9_9PHAE1.510e-5086.14ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2DH67_9EUKA6.480e-4772.28Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A2N2K314_9DELT1.470e-4668.32Energy-dependent translational throttle protein Et... [more]
A0A6J6YDC8_9ZZZZ9.390e-4667.00Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A537T6F4_9PROT1.390e-4566.67ATP-binding cassette domain-containing protein (Fr... [more]
T0ZX24_9ZZZZ1.780e-4569.70ABC transporter, ATP-binding protein n=1 Tax=mine ... [more]
A0A7S4BTX0_CHRCT1.170e-4469.00Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A535H6C1_9CHLR1.210e-4471.00ATP-binding cassette domain-containing protein (Fr... [more]
A0A3C1GLT0_9BACT1.290e-4467.33Energy-dependent translational throttle protein Et... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18139contigH-paniculata_contig18139:421..1103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue7.6e-44
Seed eggNOG ortholog2880.D7FX01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.5013003-CDS-H-paniculata_contig18139:420..6001622929411.5013003-CDS-H-paniculata_contig18139:420..600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18139 421..600 -
1691480849.7329335-CDS-H-paniculata_contig18139:420..6001691480849.7329335-CDS-H-paniculata_contig18139:420..600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18139 421..600 -
1622929411.5156176-CDS-H-paniculata_contig18139:959..11031622929411.5156176-CDS-H-paniculata_contig18139:959..1103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18139 960..1103 -
1691480849.742029-CDS-H-paniculata_contig18139:959..11031691480849.742029-CDS-H-paniculata_contig18139:959..1103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18139 960..1103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18139.4400.1prot_H-paniculata_contig18139.4400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18139 421..1103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18139.4400.1

>prot_H-paniculata_contig18139.4400.1 ID=prot_H-paniculata_contig18139.4400.1|Name=mRNA_H-paniculata_contig18139.4400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MCRKLAQIGDRQVNVRSYTAAFNLRGSAQEKRVGDMSGGERNRVHLAKVL
KEGHNVLLLDEPTNDLDVDTLRSLEDAIQDFVGCVLIVSHDRWFLDRVCS
HTIAFEEE
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mRNA from alignment at H-paniculata_contig18139:421..1103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18139.4400.1 ID=mRNA_H-paniculata_contig18139.4400.1|Name=mRNA_H-paniculata_contig18139.4400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=683bp|location=Sequence derived from alignment at H-paniculata_contig18139:421..1103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCGGAAACTCGCCCAGATCGGGGATCGCCAAGTGAACGTTCGGTC GTACACGGCGGCATTTAACCTGCGCGGATCGGCGCAGGAAAAGCGCGTGG GAGACATGAGTGGTGGAGAGCGTAATCGAGTTCATCTTGCCAAGGTAAAC AAATCCAAAATGATCTAAATTAGTATGGACTGTGTGGGAAAATGAGGCTT ACTGTCCTCTACAGACGTTAGGTGATTATTGCCCGTTTCGGGGCGTTAGT ACCTTGTCCCCACATTGCCCCGCATTCCTCCGAGATTACTTTGGAAGACC GCAGTTTAGGGGTGACCGGAAACCGACTGGCGCGCGGCGAGGTATTGCGA TGTGGTTCTTTACATGAGTTCTGAACCTGTTGCTGTTATTCCCCACCATA GTTGCAACTTTTTGGTATGTCGATGCTGGGGTGGTGGTGATAGTGATGGC GATGATGATGATGCATGCATGAATGCGTGCGTGCGTGCACTATCTGCTTG CAGGTGCTGAAAGAAGGCCACAACGTCCTGTTGCTGGATGAGCCCACGAA CGATCTCGACGTGGACACGCTCCGGTCTTTAGAAGACGCTATCCAAGACT TCGTGGGTTGCGTTCTCATTGTCTCCCACGACCGCTGGTTCCTGGACCGA GTGTGCTCTCACACGATAGCTTTCGAGGAAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18139:421..1103-

>mRNA_H-paniculata_contig18139.4400.1 ID=mRNA_H-paniculata_contig18139.4400.1|Name=mRNA_H-paniculata_contig18139.4400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig18139:421..1103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCGGAAACTCGCCCAGATCGGGGATCGCCAAGTGAACGTTCGGTC
GTACACGGCGGCATTTAACCTGCGCGGATCGGCGCAGGAAAAGCGCGTGG
GAGACATGAGTGGTGGAGAGCGTAATCGAGTTCATCTTGCCAAGATGTGC
CGGAAACTCGCCCAGATCGGGGATCGCCAAGTGAACGTTCGGTCGTACAC
GGCGGCATTTAACCTGCGCGGATCGGCGCAGGAAAAGCGCGTGGGAGACA
TGAGTGGTGGAGAGCGTAATCGAGTTCATCTTGCCAAGGTGCTGAAAGAA
GGCCACAACGTCCTGTTGCTGGATGAGCCCACGAACGATCTCGACGTGGA
CACGCTCCGGTCTTTAGAAGACGCTATCCAAGACTTCGTGGGTTGCGTTC
TCATTGTCTCCCACGACCGCTGGTTCCTGGACCGAGTGTGCTCTCACACG
ATAGCTTTCGAGGAAGAAGTGCTGAAAGAAGGCCACAACGTCCTGTTGCT
GGATGAGCCCACGAACGATCTCGACGTGGACACGCTCCGGTCTTTAGAAG
ACGCTATCCAAGACTTCGTGGGTTGCGTTCTCATTGTCTCCCACGACCGC
TGGTTCCTGGACCGAGTGTGCTCTCACACGATAGCTTTCGAGGAAGAA
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