mRNA_H-paniculata_contig1809.4371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1809.4371.1 vs. uniprot
Match: A0A6H5L576_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L576_9PHAE) HSP 1 Score: 501 bits (1291), Expect = 5.200e-168 Identity = 322/651 (49.46%), Postives = 402/651 (61.75%), Query Frame = 1
Query: 7 SWTKGDRKARRELERALACDNDDHVTRFALLRLLANKGEWVAAEDLLSGPEVEAKLLADPTTHVACLSSLGEAYLVLWKARGQY------SQGENGQGGGTNNACELEWRLDVSGDRREILHKAQGFLEEALTAPENVNDPVLRAQV-------------------------------------------AFCKEARGDCSGALSIYAGIITDCPLSPGTSAVIFRTSVLLAHVGRFDECVRYLEFIEGDPPRGCSQLLLEALHYICNVTIGLELKVSKRIPALREAYHNEFDAGRMGTGFDREKVPWDRLPAWPCMWQELGERSLRRGDYYLGVMMSSQALLIKEDASTLVSTGEMLWVLGDVKRALEYCERAYAADASYAGAKRRLAGWAPEKWKERIAKEEDRRRAVAEMQRLAARSGKKADAMIARRGQREKARVFKMWRRLHYKFKHMAYRRASAADEGAVTA----------------QHTRKRQNEGVTNSTGXXXXXXXXXXXXXXXXXXVSVSTLSSESTQSQKHTTGRLGGAARWSPAVAPSGGTVTTGFPGSTTSQQEKVHFPTPSAEQAEQAGRANFQACFRMERAKLLGMDKGVNNGGVGVGRVGGVAATDNN------MAPVEAGATAVREAMMGGG 1746
+WTKGD +A+++LE++L+ D DDHVTRFAL+RLLA+K E AAE+LL GP VE +LLADP T VA LSSLG AYL+LW+ARG+ S+ GQG T E+ RLDVS +R ++LH+AQ FLEEAL +PEN+NDP +RAQV AFCKEARGD AL++YA II+D LSPG SAVIFRTSVLLA+VGR DECVRYLEFIEG PP+GCS LL++AL Y C V++GLE+KVS+R+ LREAY++E+ AGRMG GF R+++PWDRLP W MW+ELG S+R G+YY G+ M SQA L ++D T+V T EMLWVLG+ KRAL CERAYAAD + GA+RRL+GWAP+KWKERI KEE+RR A+ EM+RLA S KKADAM+ARR +REKAR + WRRLH K KH R S E A T + + + + S+ XXXXXXXXXXXXXXXXXX SS S + Q + +A +P P FP PSA +A +AGR+NF ACFR E + + + AT+++ MA V+ A A+ EAM GGG
Sbjct: 4 AWTKGDWRAKKQLEKSLSSDQDDHVTRFALVRLLASKAEPAAAEELLRGPGVEDRLLADPNTRVAMLSSLGGAYLMLWRARGETTSESTGSRAGGGQGKDTREVVEI--RLDVSSERTDLLHRAQHFLEEALMSPENLNDPAIRAQVGERGKWKSVLRLPGLARLPPSRLSLFRPDIRSLLHPDCCAFKKAFCKEARGDYKEALTLYASIISDSALSPGASAVIFRTSVLLAYVGRLDECVRYLEFIEGQPPKGCSMLLVQALLYTCYVSLGLEVKVSRRLITLREAYNDEYTAGRMGRGFSRDEIPWDRLPGWFYMWRELGVESIRAGNYYAGIQMFSQATLQRQDPETMVCTAEMLWVLGEPKRALALCERAYAADPLHIGAQRRLSGWAPQKWKERIVKEEERREAITEMRRLADLSDKKADAMLARRRRREKARFLRAWRRLHDKHKHR--RSTSTEGEEAQTGXXXXXXXXXXXXXGSDKFSWSDSSSSRSGSSSXXXXXXXXXXXXXXXXXXXXXXFASSLSAKEQVERSVDEKSSASSAPVPEP---------------------FPVPSAAEAAEAGRSNFSACFRAETERAMRRKR---------------EATEHHGEMPMDMASVKVAAEAIHEAMRGGG 614 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1809.4371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1809.4371.1 >prot_H-paniculata_contig1809.4371.1 ID=prot_H-paniculata_contig1809.4371.1|Name=mRNA_H-paniculata_contig1809.4371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=582bp MSSWTKGDRKARRELERALACDNDDHVTRFALLRLLANKGEWVAAEDLLSback to top mRNA from alignment at H-paniculata_contig1809:7625..13621- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1809.4371.1 ID=mRNA_H-paniculata_contig1809.4371.1|Name=mRNA_H-paniculata_contig1809.4371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5997bp|location=Sequence derived from alignment at H-paniculata_contig1809:7625..13621- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1809:7625..13621- >mRNA_H-paniculata_contig1809.4371.1 ID=mRNA_H-paniculata_contig1809.4371.1|Name=mRNA_H-paniculata_contig1809.4371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3492bp|location=Sequence derived from alignment at H-paniculata_contig1809:7625..13621- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |