mRNA_H-paniculata_contig17991.4338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17991.4338.1
Unique NamemRNA_H-paniculata_contig17991.4338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 218 bits (555), Expect = 2.440e-63
Identity = 139/447 (31.10%), Postives = 205/447 (45.86%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLN------------------------WNNTLDDFLVEIGLQRSIIDHAYTSRDEMGKTGLLVAVYVDDLVIASHRKEVD---------------------------------------------------------------------------------EFKGMVGPLMYASTGTRPDITYEVNQAACRMENQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQ-EGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +L  +  WE  D   LP G++ I  KW+FK K ++ GN+  YKARLVA+GFSQ++G D+ +T APV R  T+R +F++   ++  +  +DV  AYLN  ++E LF++ PP  +                        WN    D L ++G + +  D    SR E   T   V +YVDDL+IA    E+                                                                                  E++  +G L+Y +T TRPDI++ V Q    ME+  ++D+   KR+ RYL   P   + F   +NG  +  GFV ADWA D  DRKST+GY FK+   T++W SRKQ  V  SS EAEY+AA EA ++ +++R +L  IG      T  +E N+  I +++      RTKHI +R+H
Sbjct:    2 SLERHKVWEIAD---LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDKTFAPVVRHETVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTGGKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCLFSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREEDGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYH 443          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 217 bits (552), Expect = 2.670e-62
Identity = 146/454 (32.16%), Postives = 206/454 (45.37%), Query Frame = 1
Query:    1 MGALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDL------------------------NWNNTLDDFLVEIGLQRSIIDHAYTSRDEMGKTGLLVAVYVDDLVIA-------SHRK---------------------------------------------------------------------------EVDEFKGM-----VGPLMYASTGTRPDITYEVNQAACRMENQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQEGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +G + + GTWE  +    P G   + + W+FK K +  G +A+YKARLVAQGFSQ+ G D+ +T APVA+LS++R + +LA   D+EL  MDV  AYLN  +EE +F++ PP                           W   L    +++G  RS +DH+   R        +VAV VDDL IA       SH K                                                                           + D+ + +     +G LMYA+ GTRPD++Y V   +  M+N     +   KR+ RYL    +  + +GG  N +G EGF  ADW      R+S +GY+F ++GG +SW S+KQ +V  SS EAEYVA   A KE ++ R  LG I       TT +  N+SAI L+K    H RTKHI +R+H
Sbjct:   53 LGRMKKMGTWELAEK---PPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFH 501          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR)

HSP 1 Score: 222 bits (565), Expect = 4.760e-62
Identity = 142/447 (31.77%), Postives = 208/447 (46.53%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLN------------------------WNNTLDDFLVEIGLQRSIIDHAYTSRDEMGKTGLLVAVYVDDLVIASHRKEVD---------------------------------------------------------------------------------EFKGMVGPLMYASTGTRPDITYEVNQAACRMENQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQ-EGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +L ++  WE  D   LP G++ I  KW+FK K ++ GN+  YKARLVA+GFSQ++G D+ ET APV R  T+R +F++A  ++  +  +DV  AYLN  ++E LF++ PP  +                        WN    D L ++G + +  D    SR+E   T   V +YVDDL+IA    E+                                                                                  E++  +G L+Y +T TRPDI++ V Q    ME+  ++D+   KR+ RYL   P   + F   +NG  +  GFV ADWA D  DRKST+GY FK+   T++W SRKQ  V  SS EAEYVAA EA ++ +++R +L  IG      T  +E N+  I +++      RTKHI +R+H
Sbjct:  382 SLEKHKVWEIAD---LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTDGKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCLFSRNEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREEDGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDHADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYVAASEACRDLLWIRQVLEDIGIKQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYH 823          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: A0A0J7K6W1_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K6W1_LASNI)

HSP 1 Score: 221 bits (563), Expect = 5.810e-61
Identity = 144/448 (32.14%), Postives = 199/448 (44.42%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLN------------------------WNNTLDDFLVEIGLQRSIIDHAYTSRDEMGKTGLLVAVYVDDLVIASHRKEV---------------------------------------------------------------------------------DEFKGMVGPLMYASTGTRPDITYEVNQAACRMENQCRKDFSTCKRIFRYLTTVPDPGIMFG--GKSNGHGQEGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +L E+ TWE  D   LP G+K I  KW+FK KL+ +G V  YKARLVA+GFSQ  GED+ ET APV +  T+R +  +A  +   +  +DV +AYLN  +EE +F++ PP                           WN   ++ L ++G Q    D    +R E G     V +YVDDL++A    EV                                                                                  +++  +G L+Y +T +RPDI   V      +EN   +D+   KR+ RYL +  D  +     GK+     E FV ADWA D  DRKST+GY+F+L  GT++W SRKQ  V  SS EAEY+AA  A KE ++LR LL  +     G T   E N+  I+L +      RTKHI VR+H
Sbjct:  833 SLNEHQTWELTD---LPPGKKAITCKWVFKAKLDSEGQVHTYKARLVARGFSQRYGEDYDETFAPVVKHETIRILLLVAAHKGLHVRHLDVKSAYLNGKLEEEIFLEQPPGFQKRGHESKVLRLLKSLYGLKQSARAWNKRANEALAQLGFQSKNADQCLYTRKEKGNNTTYVLLYVDDLLVAGTSAEVTQKVSKDLQRHFNIKDLGNVNHYLGIQIEREADGSFLLSQKGKISKMLEEYGLLEPKPMATPMETGFLSSEADDSIKLPNNSQYRKAIGSLLYIATVSRPDIALAVGILCRCVENPTERDWKAVKRVMRYLASTIDKKLQLSSFGKTE---LECFVDADWAGDKTDRKSTSGYVFRLGNGTVAWSSRKQTTVAMSSTEAEYIAASYASKELLWLRQLLKDMNIPAEGPTIINEDNQGCIHLIESDRCEARTKHIHVRYH 1274          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: A0A2N9G4M2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G4M2_FAGSY)

HSP 1 Score: 218 bits (554), Expect = 6.570e-60
Identity = 133/367 (36.24%), Postives = 201/367 (54.77%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLPAGRKKIRTKWIFKRK-LNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLN------------------------WNNTLDDFLVEIGLQRSIIDHAYTSRDEMGKTGLLVAVYVDDLVIASHRK-EVDEFKGMVGPLMYASTGTRPDITYEVNQAACRMENQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQEGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +L +N TWE  +   LP G+K I  KW+FK+K    +    R+KARLVA+G+SQ  G D+ E  +PV R +++R V +L  +QD ELE +DV  A+L+  +EE +F++ P                            W    D ++++IG  R   D     R     + + + +YVDD++IA+    E  E +   G L   ++G RPD+ + V+  +  M N  R+ ++  K IFRYL    + GI+F  +   +   G+V AD+A +V DR+STTGY+F L+GG I W S  Q +V  S+ EAEY+A  EA KEA++L+GL+  +G   +G       ++SAI L+K    H RTKHI VR+H
Sbjct:  708 SLSKNKTWELTE---LPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQWYKRFDSYMIQIGYTRCEYDCCVYVRILEDGSYIFLLLYVDDMLIAAKSMCERTEGQESCGCLRKTTSG-RPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFH 1069          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: X1WUQ9_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WUQ9_ACYPI)

HSP 1 Score: 215 bits (547), Expect = 3.720e-59
Identity = 132/402 (32.84%), Postives = 212/402 (52.74%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLN----------------------WNNTLDDFLVEIGLQRSIIDHAYTSRDE----------------MGKTGLLVAVYVDDL---------------------VIASHRKEVDE-FKGMVGPLMYASTGTRPDITYEVNQAACRMENQCRK-DFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQEGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +L +N TW       LP GRK + TKW+FK K +  G+V +YKARLVAQGFSQ EG D+++T +PVA+L+TLRT+ ++A ++++ L+ +DV  A+L   + E ++++ P  LN                      W+   D+++ ++ + +S +   +   D                 +GK  +    Y++D+                     +   +++E ++ ++ +VG LMYA  G+RPD++Y +N   CR +++  K  ++  KR+ RY+    + G+ F  +SN     GFV ADWA    DRKSTTGY+FK+    +SW +++Q  V  SS EAEY+A   A  EAI++R LL  +     G    FE N+ AI+LS     H R+KHI  + H
Sbjct:  543 SLKKNNTWTL---SHLPKGRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMILKLNKSLYGLKQASKCWHERFDNYIAKLEI-KSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIQEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALN-FFCRYQSKPNKCHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHH 939          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 212 bits (539), Expect = 9.190e-58
Identity = 141/446 (31.61%), Postives = 214/446 (47.98%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLN----------------------WNNTLDDFLVEIGLQRSIIDHA-YTSRDEMGKTGLLVAVYVDDLVIA-----------SHRKEVDE--------------------------------------------------------------------FKGMVGPLMYASTGTRPDITYEVNQAACRME---NQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQEGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +L +N TW       LP GRK + TKW+FK K +  G+V +YKARLVAQGFSQ EG D+++T +PVA+L+TLRT+ ++A ++++ L+ +DV  A+L   + E ++++ P  LN                      W+   D+++ ++GL++S  D   Y   +      + + +YVDD++IA           S+ KE  E                                                                    ++ +VG LMYA  G+RPD++Y +N   CR +   N+C   ++  KR+ RY+    + G+ F  +SN     GFV ADWA    DRKSTTGY+FK+    +SW +++Q  V  SS EAEY+A   A  EAI++R LL  +     G    FE N+ AI+LS     H R+KHI  + H
Sbjct:  796 SLKKNNTWTL---SHLPKGRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMIFKLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALN-FFCRYQSKPNECH--WNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHH 1235          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: A0A0J7KDE2_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDE2_LASNI)

HSP 1 Score: 212 bits (539), Expect = 9.210e-58
Identity = 134/368 (36.41%), Postives = 200/368 (54.35%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLP--AGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLNWNNTLDD---FLVE----IGLQRS---------IIDHAYTSR-----DEMGKTGLLVAVYVDDLV--IASHRKEVDE--FKGMVGPLMYASTGTRPDITYEVNQAACRMENQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQEGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            A  +N TW+      +P  +G K I +KW+FK   +EDG++ R+KARL A+GF Q  G D+ ET +PV R  +LRT+ ++ T+ D E    DV  A+L+  + E +++++P  LN N  + D    + E    +GLQ S         +   AYT R           GL V      L+  +  +R EV +  ++  VG L++ +  +RPDI+Y VN  +  + N     +   KRI  YL      GI +    +G    GF  AD+A D++ R+STTGY F +  G +SW S++QKLV+ S+ E+EY+AA  A +EAI+LR LL  IG  C+ +T     N+SAI L K    H RTKH+ +R+H
Sbjct:  870 AHEKNNTWKL-----VPRVSGTKTIDSKWVFKVIQSEDGSIRRFKARLCARGFQQRRGIDYGETFSPVVRYDSLRTLLAIITQDDLEALQFDVRTAFLHGELSENIWMEVPVGLNINKEVGDRETLVCECSCFVGLQISRDRINKTMFVHQTAYTRRLINNFGMQNAKGLSVPADPHTLLYPVTENRTEVCKIPYREAVGSLIFLAVVSRPDISYAVNNVSKFLNNHDTSHWQAVKRIIAYLVNTIGYGIEYRRNESGCELIGFSDADFASDIETRRSTTGYAFLIANGLVSWSSQRQKLVSLSTTESEYIAASSATREAIWLRNLLHDIGHKCKNATLIHIDNQSAIRLVKNPEFHKRTKHVDIRYH 1232          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: J9M5U1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M5U1_ACYPI)

HSP 1 Score: 211 bits (537), Expect = 1.900e-57
Identity = 141/446 (31.61%), Postives = 213/446 (47.76%), Query Frame = 1
Query:    7 ALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDLN----------------------WNNTLDDFLVEIGLQRSIIDHA-YTSRDEMGKTGLLVAVYVDDLVIA-----------SHRKEVDE--------------------------------------------------------------------FKGMVGPLMYASTGTRPDITYEVNQAACRME---NQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQEGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            +L +N TW       LP GRK + TKW+FK K +  G+V +YKARLVAQGFSQ EG D+++T +PVA+L+TLRT+ ++A ++++ L+ +DV  A+L   + E ++++ P  LN                      W+   D+++ ++GL++S  D   Y   +      + + +YVDD++IA           S+ KE  E                                                                    ++ +VG LMYA  G+RPD++Y +N   CR +   N+C   ++  KR+ RY     + G+ F  +SN     GFV ADWA    DRKSTTGY+FK+    +SW +++Q  V  SS EAEY+A   A  EAI++R LL  +     G    FE N+ AI+LS     H R+KHI  + H
Sbjct: 1505 SLKKNNTWTL---SHLPKGRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMILKLNKSLYGLKQASKCWHERFDNYIAKLGLKQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALN-FFCRYQSKPNECH--WNHLKRVLRYFKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHH 1944          
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Match: A0A2K3M4Z2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M4Z2_TRIPR)

HSP 1 Score: 202 bits (514), Expect = 2.110e-57
Identity = 132/404 (32.67%), Postives = 202/404 (50.00%), Query Frame = 1
Query:    1 MGALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVAQGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNAPVEETLFVQLPPDL------------------------NWNNTLDDFLVEIGLQRSIIDHAYTSRDEMGKTGLLVAVYVDDLVIASHRKEV-DEFK-GMVGPLMYASTGT--------------------RPDITYEVNQAACRMENQCRKDFST-CK-------------RIFRYLTTVPDPGIMFGGKSNGHGQ-EGFVGADWAEDVKDRKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRGLLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWH 1029
            M A+ +N TWE  D   LP G K I  KWIFK KLNE+G V +YKARLVA+G+SQ  G D+ E  APVAR  T+R V +LA ++ + +  +DV +A+L+  + E +FV  P                            W + ++ + ++ G ++   +H    +   G   L++++YVDDL+   + + + +EFK  M      +  G                     R  +   + +      N  R   +  CK             ++ RYL    D GI++  K NG+ + E +  +D+A D+ DRKST+GY+F  + G +SW S+KQ +VT S+ EAE++AA     + I++R +L  +G    GSTT +  N SAI LSK    H R+KHI VR+H
Sbjct:   28 MEAIEKNNTWELTD---LPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWSVYQLDVKSAFLHGELNEAVFVDQPQGYVKKGDTVKVYRLKKALYGLKQAPRAWYSRIEAYFIKEGFEKCPYEHTLFVKLSEGGNILIISLYVDDLIFTGNDENMFEEFKKSMENEFNMSDLGKMHYFLGVEVIQNEKGIYICQRKYVRELLERFGMEKSNLSRNPIAPGCKLVKDEEGVKVDATKVLRYLNGTIDLGILY--KRNGNEKLEAYTDSDYAGDLDDRKSTSGYVFMFSSGAVSWSSKKQPVVTLSTTEAEFIAAASCACQGIWMRRILEKLGHTQLGSTTVYCDNSSAIKLSKNPVLHGRSKHIDVRFH 426          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17991.4338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S6QJX2_TRIMR2.440e-6331.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZVS1_9AGAM2.670e-6232.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QN85_TRIMR4.760e-6231.77Integrase catalytic domain-containing protein n=2 ... [more]
A0A0J7K6W1_LASNI5.810e-6132.14Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A2N9G4M2_FAGSY6.570e-6036.24Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
X1WUQ9_ACYPI3.720e-5932.84Integrase catalytic domain-containing protein n=1 ... [more]
J9KJ72_ACYPI9.190e-5831.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A0J7KDE2_LASNI9.210e-5836.41Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
J9M5U1_ACYPI1.900e-5731.61Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
A0A2K3M4Z2_TRIPR2.110e-5732.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17991contigH-paniculata_contig17991:648..2077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue6.9e-54
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1038
Cds size1038
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17991.4338.1prot_H-paniculata_contig17991.4338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17991 648..2077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.6803508-CDS-H-paniculata_contig17991:647..11731622929403.6803508-CDS-H-paniculata_contig17991:647..1173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17991 648..1173 -
1691480846.105942-CDS-H-paniculata_contig17991:647..11731691480846.105942-CDS-H-paniculata_contig17991:647..1173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17991 648..1173 -
1622929403.6919794-CDS-H-paniculata_contig17991:1490..16641622929403.6919794-CDS-H-paniculata_contig17991:1490..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17991 1491..1664 -
1691480846.116373-CDS-H-paniculata_contig17991:1490..16641691480846.116373-CDS-H-paniculata_contig17991:1490..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17991 1491..1664 -
1622929403.7249475-CDS-H-paniculata_contig17991:1739..20771622929403.7249475-CDS-H-paniculata_contig17991:1739..2077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17991 1740..2077 -
1691480846.1272748-CDS-H-paniculata_contig17991:1739..20771691480846.1272748-CDS-H-paniculata_contig17991:1739..2077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17991 1740..2077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17991.4338.1

>prot_H-paniculata_contig17991.4338.1 ID=prot_H-paniculata_contig17991.4338.1|Name=mRNA_H-paniculata_contig17991.4338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=346bp
MGALVENGTWESKDPGRLPAGRKKIRTKWIFKRKLNEDGNVARYKARLVA
QGFSQVEGEDFFETGAPVARLSTLRTVFSLATEQDFELESMDVNAAYLNA
PVEETLFVQLPPDLNWNNTLDDFLVEIGLQRSIIDHAYTSRDEMGKTGLL
VAVYVDDLVIASHRKEVDEFKGMVGPLMYASTGTRPDITYEVNQAACRME
NQCRKDFSTCKRIFRYLTTVPDPGIMFGGKSNGHGQEGFVGADWAEDVKD
RKSTTGYIFKLNGGTISWCSRKQKLVTWSSKEAEYVAAGEARKEAIYLRG
LLGSIGFGCRGSTTKFEGNESAINLSKGTGAHCRTKHIGVRWHGT*
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mRNA from alignment at H-paniculata_contig17991:648..2077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17991.4338.1 ID=mRNA_H-paniculata_contig17991.4338.1|Name=mRNA_H-paniculata_contig17991.4338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1430bp|location=Sequence derived from alignment at H-paniculata_contig17991:648..2077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCGTTGGTGGAAAATGGAACGTGGGAAAGCAAAGACCCGGGGAG GTTACCGGCAGGTCGGAAGAAGATTCGTACGAAATGGATTTTCAAGCGGA AACTGAACGAGGACGGTAACGTGGCACGCTACAAAGCGCGACTGGTGGCT CAAGGTTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAACCGGTGCCCC CGTAGCTCGCTTGTCGACCTTACGTACTGTTTTTAGCCTGGCCACCGAAC AAGATTTCGAATTAGAAAGCATGGACGTAAATGCGGCGTATTTGAACGCC CCTGTAGAAGAAACGTTATTTGTTCAGCTACCCCCAGAGTTTTTCCCTTT TTCCTGAGACATTCCGTTTGTGCGCCGCCTGCCTAAAAGCCTGTACGACC TCAAGCAGAGCAGCCTAAATTGGAATAACACTCTTGACGATTTTCTTGTT GAGATAGGACTCCAACGTTCCATTATCGACCATGCTTATACTTCTCGCGA CGAAATGGGAAAGACAGGCCTTCTGGTAGCCGTCTACGTTGACGACCTGG TCATTGCTAGCCATCGTAAGGAAGTAGACGAGTTCAAGTATAACATAAGT TAGCGTTTTAGGATTAAAGACTTAGGCTCTCTCTCGCGCGTGTTGTGAAT AGAAGTACGACGTGACCGCCGTAATGGTACCATACCAATATCCCAAAGTG GCTACATCCGCGAGGTACTGAAAAGATAGGGTTTGACGAGTGTCGAGGCG TGCCCACTCCCGTAGAGGGAAAAGTGAAGATTTTGGCACCCGAGTCGGTC GACAAGCCCTCCGAACCGAAGTCACATGGGGCTGCACTGTCGGACATAGG CGTAGGAATACAAGAAAGCAGCAGAGGGAGAAGTGCCAATTCATCTTAAT ACAGAGGCATGGTAGGACCACTCATGTACGCCTCGACAGGAACTAGACCT GATATAACATACGAGGTAAACCAAGCAGCATGTCGTATGGAAAACCAATG TCGGAAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCACTACTG TGCCTGACCCCGGCATTATGTTTGGCGGTAAGAGTAATGGTCACGGTCAG GAAGGATTCGTTGGTGCCGATTGGGCGGAAGATGTCAAGGACCGAAAGTC CACAACAGGATACATATTCAAGCTGAACGGTGGTACGATAAGTTGGTGCT CTAGGAAGCAAAAGTTAGTCACGTGGTCCAGCAAAGAGGCAGAGTACGTT GCTGCAGGAGAAGCGAGAAAGGAGGCGATATATCTTAGGGGGTTACTGGG ATCGATAGGTTTCGGATGCAGGGGGAGCACGACAAAGTTCGAGGGCAATG AATCAGCTATTAATCTCAGTAAGGGAACTGGCGCACACTGCAGGACAAAA CACATCGGAGTGCGCTGGCACGGAACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17991:648..2077-

>mRNA_H-paniculata_contig17991.4338.1 ID=mRNA_H-paniculata_contig17991.4338.1|Name=mRNA_H-paniculata_contig17991.4338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at H-paniculata_contig17991:648..2077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCGTTGGTGGAAAATGGAACGTGGGAAAGCAAAGACCCGGGGAG
GTTACCGGCAGGTCGGAAGAAGATTCGTACGAAATGGATTTTCAAGCGGA
AACTGAACGAGGACGGTAACGTGGCACGCTACAAAGCGCGACTGGTGGCT
CAAGGTTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAACCGGTGCCCC
CGTAGCTCGCTTGTCGACCTTACGTACTGTTTTTAGCCTGGCCACCGAAC
AAGATTTCGAATTAGAAAGCATGGACGTAAATGCGGCGTATTTGAACGCC
CCTGTAGAAGAAACGTTATTTGTTCAGCTACCCCCAGAATGGGGGCGTTG
GTGGAAAATGGAACGTGGGAAAGCAAAGACCCGGGGAGGTTACCGGCAGG
TCGGAAGAAGATTCGTACGAAATGGATTTTCAAGCGGAAACTGAACGAGG
ACGGTAACGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCA
CAGGTGGAGGGTGAAGATTTCTTTGAAACCGGTGCCCCCGTAGCTCGCTT
GTCGACCTTACGTACTGTTTTTAGCCTGGCCACCGAACAAGATTTCGAAT
TAGAAAGCATGGACGTAAATGCGGCGTATTTGAACGCCCCTGTAGAAGAA
ACGTTATTTGTTCAGCTACCCCCAGACCTAAATTGGAATAACACTCTTGA
CGATTTTCTTGTTGAGATAGGACTCCAACGTTCCATTATCGACCATGCTT
ATACTTCTCGCGACGAAATGGGAAAGACAGGCCTTCTGGTAGCCGTCTAC
GTTGACGACCTGGTCATTGCTAGCCATCGTAAGGAAGTAGACGAGTTCAA
CCTAAATTGGAATAACACTCTTGACGATTTTCTTGTTGAGATAGGACTCC
AACGTTCCATTATCGACCATGCTTATACTTCTCGCGACGAAATGGGAAAG
ACAGGCCTTCTGGTAGCCGTCTACGTTGACGACCTGGTCATTGCTAGCCA
TCGTAAGGAAGTAGACGAGTTCAAAGGCATGGTAGGACCACTCATGTACG
CCTCGACAGGAACTAGACCTGATATAACATACGAGGTAAACCAAGCAGCA
TGTCGTATGGAAAACCAATGTCGGAAAGACTTCAGTACATGCAAGCGCAT
TTTTCGTTATCTCACTACTGTGCCTGACCCCGGCATTATGTTTGGCGGTA
AGAGTAATGGTCACGGTCAGGAAGGATTCGTTGGTGCCGATTGGGCGGAA
GATGTCAAGGACCGAAAGTCCACAACAGGATACATATTCAAGCTGAACGG
TGGTACGATAAGTTGGTGCTCTAGGAAGCAAAAGTTAGTCACGTGGTCCA
GCAAAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGAGAAAGGAGGCGATA
TATCTTAGGGGGTTACTGGGATCGATAGGTTTCGGATGCAGGGGGAGCAC
GACAAAGTTCGAGGGCAATGAATCAGCTATTAATCTCAGTAAGGGAACTG
GCGCACACTGCAGGACAAAACACATCGGAGTGCGCTGGCACGGAACTTGA
AGGCATGGTAGGACCACTCATGTACGCCTCGACAGGAACTAGACCTGATA
TAACATACGAGGTAAACCAAGCAGCATGTCGTATGGAAAACCAATGTCGG
AAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCACTACTGTGCC
TGACCCCGGCATTATGTTTGGCGGTAAGAGTAATGGTCACGGTCAGGAAG
GATTCGTTGGTGCCGATTGGGCGGAAGATGTCAAGGACCGAAAGTCCACA
ACAGGATACATATTCAAGCTGAACGGTGGTACGATAAGTTGGTGCTCTAG
GAAGCAAAAGTTAGTCACGTGGTCCAGCAAAGAGGCAGAGTACGTTGCTG
CAGGAGAAGCGAGAAAGGAGGCGATATATCTTAGGGGGTTACTGGGATCG
ATAGGTTTCGGATGCAGGGGGAGCACGACAAAGTTCGAGGGCAATGAATC
AGCTATTAATCTCAGTAAGGGAACTGGCGCACACTGCAGGACAAAACACA
TCGGAGTGCGCTGGCACGGAACTTGA
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