mRNA_H-paniculata_contig1795.4319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1795.4319.1
Unique NamemRNA_H-paniculata_contig1795.4319.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: D8LH69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH69_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 3.160e-98
Identity = 199/235 (84.68%), Postives = 206/235 (87.66%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQ-NTSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTAHRPTW  AQ AASD GNWSTGGQASQAVS+ DLPSQT LKFR+TGQNSE ELRKRD RAEVEDSERRA D KP   +RRYDEGG GRGR+RLQLLLKEQ +VNLDDVKKYDD  XXXXXXXXXXXXXXXXXXXXXX LEKELEKIR    XXXXXXXXXX      RK+EAAMTGNILLTQ N+SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK
Sbjct:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 235          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A8K1CHA0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA0_PYTOL)

HSP 1 Score: 152 bits (385), Expect = 1.400e-41
Identity = 131/241 (54.36%), Postives = 160/241 (66.39%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNTSS---QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTAHRPTW AA G  ++ G W +GGQ SQ  S+ DLP  TKLK RQ GQ +  E+  RD RAE+E  E++  + K   ++   D+       ++L LL   + +     +K    KYDDA   XXXXXXXXXXXXXXXXXXX  L +ELEKI+  XXXXXXXXXXXX E  EK  RE  + GN L    ++S   ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTWHAAVGQKNE-GGWQSGGQVSQQFSARDLPGHTKLKIRQVGQGTANEIELRDLRAELEGREQQYEEEKGKSNNTAQDKLRRLEENKKLLLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXAELMRELEKIKKEXXXXXXXXXXXXREAAEKMAREEILQGNPLTQAASASGTAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYVQ 240          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A7S2FJV3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJV3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.520e-40
Identity = 126/239 (52.72%), Postives = 149/239 (62.34%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGR---GRERLQLLLKEQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXL-EKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGN-ILLTQNTSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTAHRPTWVA +G ASD GNWS GG+ S   S  D+P  TKLK RQ  Q  +   R      E+E +E +A D K     R   E        G  +  +L  E+V+    + +KYDD  XXXXXXXXXXXXXXXXXXXXXX L ++ELEKI+              A + EK   +AA+ GN ++L    SSQVKR+WNDDVVFK QARTEPE KKRFVNDTIRNDFHRRFL K+ K
Sbjct:    1 MTTAHRPTWVAGKGEASDYGNWSLGGKVSGQFSVKDMPGHTKLKMRQGEQIPDFVTRD-----ELESAEDKALDEKLKAKKRSALEDSSSSTVLGGAKPLMLKAEEVDTERIN-RKYDDGDXXXXXXXXXXXXXXXXXXXXXXELLQRELEKIKAEREKVRLEKEAEEAAIAEKTASDAALLGNPLMLGATKSSQVKRKWNDDVVFKNQARTEPEAKKRFVNDTIRNDFHRRFLAKFAK 233          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A836C8J3_9STRA (Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J3_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.050e-39
Identity = 134/236 (56.78%), Postives = 156/236 (66.10%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRR-YDEGGGGRGRERLQLLLKEQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQ-NTSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTAHRPTW  A G ++  GNW+TGG + Q  S+ D P   KLKFRQ GQNSE EL++RD +  +E  E  A + K  G     + +  GG                           XXXXXXXXXXXXXXXXXXXXXX  L+KELEKIR XXXXXXXXXXXXX        +EAAM+GN+LL+   ++SQVKRRWNDDVVFKGQARTEP+ KKRFVNDTIR+DFHR FL KY+K
Sbjct:    1 MTTAHRPTWTPAVGTSNARGNWATGGLSWQ-FSAKDEPGHKKLKFRQLGQNSEAELKRRDLKTVLEAKEENAKEEKRTGRPAAVHGDAKGGDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALQKELEKIRRXXXXXXXXXXXXXXXXXXXXXQEAAMSGNVLLSMAQSTSQVKRRWNDDVVFKGQARTEPQVKKRFVNDTIRSDFHRSFLKKYVK 235          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: K3WMS3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMS3_GLOUD)

HSP 1 Score: 146 bits (369), Expect = 3.280e-39
Identity = 124/240 (51.67%), Postives = 154/240 (64.17%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT--SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTAHRPTW AA G A++ G W  GG  S+  S+ DLP+  KLK+RQ GQ +  E+   D RAE+E  E +  + K        D+       ++L LL   + +     +K    KYDDA          XXXXXXXXXXXXXXL +ELEKI+ XXXXXXXXXXXXX    E+  R   + GN LL Q++  S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL+KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGALSEQFSARDLPAHKKLKYRQVGQGTANEVELLDLRAELEGKEEKYEEEKGKKKDTALDKLRRLEENKKLLLLGDSEADARESQLKSIASKYDDADEIGDSDDSSXXXXXXXXXXXXXXLMRELEKIKRXXXXXXXXXXXXXXXASEQESRVEILQGNPLLQQSSGGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLSKYIQ 239          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A3F2RN91_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RN91_9STRA)

HSP 1 Score: 145 bits (367), Expect = 6.500e-39
Identity = 128/249 (51.41%), Postives = 154/249 (61.85%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK-------------KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT--SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTAHRPTW AA G A++ G W  GGQ S  VS+ DLP    LK RQ GQ +  E+   D R E+E  E    ++  +   R+ D        E+L+ L K +  + L DV+             KYDDA        XXXXXXXXXXXXXX  L +ELEKI+  XXXXXXXXXXXX  V E++ RE  + GN L  Q T  S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGQLSDQVSARDLPGHKHLKMRQVGQGTANEVELLDLRTELERKE----ETYEVEKGRKKDT-----ALEKLRRLEKNKKILLLGDVETDARESQLKNVASKYDDADDGGDSDGXXXXXXXXXXXXXXAELMRELEKIKQEXXXXXXXXXXXXXXVAEQQSREEVLQGNPLTQQQTAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYIQ 239          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A2D4BX11_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX11_PYTIN)

HSP 1 Score: 144 bits (362), Expect = 3.790e-38
Identity = 133/248 (53.63%), Postives = 158/248 (63.71%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSS------RRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXX-LEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNTSS---QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTAHRPTW AA G  S+ G W TGGQ SQ  S+ DLP  TKLK RQ GQ +  E+  RD RAE+E  E++  + K   S       RR +E       +++ LL   + +     +K    KYDDA   XXXXXXXXXXXXXXXXXXX   L +ELEKI+  XXXXXXXXXXXX        RE  + GN L    T+S   ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTWHAAVGQKSE-GGWQTGGQVSQQFSARDLPGHTKLKLRQVGQGTANEVEARDLRAELEGREQQYEEEKSKNSDSVQARLRRLEEN------KKILLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXEAELMRELEKIKKEXXXXXXXXXXXXXXXXXXXXREEILQGNPLTAAQTASANAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYVQ 241          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A485KPE0_9STRA (Aste57867_10048 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPE0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.690e-37
Identity = 124/243 (51.03%), Postives = 151/243 (62.14%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLK--EQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXX-LEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT------SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTA RPTW AA G  ++ G W+ GGQ S   S+ DLP QTKLK RQ GQ +  EL  +D + E+ + ER+  + K  G      +    R +E   LLLK  E  +   D V KYDDA        XXXXXXXXXXXXXXXX L +ELEKI+  XXXXX X      EVEE +++E  + GN L +         S+ +KR+WNDDVVFK Q+R EPETKKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTWHAAVGQKNE-GGWNAGGQVSMQFSARDLPGQTKLKTRQIGQGTVDELGMKDLKGELSERERKYEEEK--GKEVDTAQQKMLRLKENKMLLLKGDEWEDRAKDVVAKYDDADDDTRQDSXXXXXXXXXXXXXXXXXLMRELEKIKKEXXXXXLXKEMVDREVEENQRKEEILLGNPLTSAQARNIPSGSATIKRKWNDDVVFKNQSRNEPETKKRFINDTIRNDFHRRFLKTYIQ 240          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: D0NV69_PHYIT (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=D0NV69_PHYIT)

HSP 1 Score: 136 bits (343), Expect = 2.360e-35
Identity = 109/239 (45.61%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT--SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYI 699
            MTTAHRPTW AA G  S+ G W  GG+ S  VS+ DLP+  +LK RQ GQ +  E+   D R E+E  E +    K        D+       +++ LL   + +     +K    KY+DA        XXXXXXXXXXXXXXX L +ELEKI+               +  E + RE  + GN L  Q    S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI
Sbjct:    1 MTTAHRPTWHAAVGQ-SNEGGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEVEKGRKKDTAQDKLRRLEENKKILLLGDAEADAKESQLKEVASKYNDADDGAGSEAXXXXXXXXXXXXXXXELMRELEKIKQEREEERLRKEEEARKTVELQSREEILQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238          
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A067BVG0_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BVG0_SAPPC)

HSP 1 Score: 135 bits (341), Expect = 4.320e-35
Identity = 114/239 (47.70%), Postives = 145/239 (60.67%), Query Frame = 1
Query:    1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLK-EQVEVNLDDVK-KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT---SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
            MTTA RPT+ AA G  ++ G W++GGQ S   S+ DLP  TKLK RQ GQ +  EL +RD   E+ D ER+  + K       + +    R ++   LLLK ++ E    DV+ KYDDA      XXXXXXXXXXXXXXX   L +ELEKI+             X + EEKR ++  + GN L +      S+ +KR+WNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTFNAAMGKKNE-GGWNSGGQISMQFSARDLPGHTKLKTRQLGQGTSDELAERDLIGELTDRERKYEEDKLKEVD--FAQQKIMRLKDNKTLLLKGDEWEDRAKDVQTKYDDADDDVGDXXXXXXXXXXXXXXXEAELMRELEKIKREREEERLRKEQAXXDEEEKRAKDEVLMGNPLTSAMAPAGSATIKRKWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLKAYIQ 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH69_ECTSI3.160e-9884.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CHA0_PYTOL1.400e-4154.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2FJV3_9STRA2.520e-4052.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836C8J3_9STRA1.050e-3956.78Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribo... [more]
K3WMS3_GLOUD3.280e-3951.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3F2RN91_9STRA6.500e-3951.41Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
A0A2D4BX11_PYTIN3.790e-3853.63Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A485KPE0_9STRA5.690e-3751.03Aste57867_10048 protein n=1 Tax=Aphanomyces stella... [more]
D0NV69_PHYIT2.360e-3545.61Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]
A0A067BVG0_SAPPC4.320e-3547.70Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1795contigH-paniculata_contig1795:14123..17268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.0
Seed ortholog evalue2.5e-79
Seed eggNOG ortholog2880.D8LH69
Preferred nameCWC15
KEGG koko:K09191,ko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG3228@1,KOG3228@2759
Ec32 ortholog descriptionPre-mRNA-splicing factor Cwf15/Cwc15
Ec32 orthologEc-24_000770.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03021,ko03041
Exons6
Model size875
Cds size705
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.4844198-UTR-H-paniculata_contig1795:14122..142921622929401.4844198-UTR-H-paniculata_contig1795:14122..14292Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1795 14123..14292 -
1691480845.041337-UTR-H-paniculata_contig1795:14122..142921691480845.041337-UTR-H-paniculata_contig1795:14122..14292Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1795 14123..14292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.4971879-CDS-H-paniculata_contig1795:14292..144161622929401.4971879-CDS-H-paniculata_contig1795:14292..14416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 14293..14416 -
1691480845.0549939-CDS-H-paniculata_contig1795:14292..144161691480845.0549939-CDS-H-paniculata_contig1795:14292..14416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 14293..14416 -
1622929401.5138319-CDS-H-paniculata_contig1795:15487..155491622929401.5138319-CDS-H-paniculata_contig1795:15487..15549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 15488..15549 -
1691480845.063119-CDS-H-paniculata_contig1795:15487..155491691480845.063119-CDS-H-paniculata_contig1795:15487..15549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 15488..15549 -
1622929401.5287611-CDS-H-paniculata_contig1795:15731..157701622929401.5287611-CDS-H-paniculata_contig1795:15731..15770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 15732..15770 -
1691480845.0708919-CDS-H-paniculata_contig1795:15731..157701691480845.0708919-CDS-H-paniculata_contig1795:15731..15770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 15732..15770 -
1622929401.539679-CDS-H-paniculata_contig1795:16161..163881622929401.539679-CDS-H-paniculata_contig1795:16161..16388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 16162..16388 -
1691480845.0787008-CDS-H-paniculata_contig1795:16161..163881691480845.0787008-CDS-H-paniculata_contig1795:16161..16388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 16162..16388 -
1622929401.5568807-CDS-H-paniculata_contig1795:16576..167531622929401.5568807-CDS-H-paniculata_contig1795:16576..16753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 16577..16753 -
1691480845.086675-CDS-H-paniculata_contig1795:16576..167531691480845.086675-CDS-H-paniculata_contig1795:16576..16753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 16577..16753 -
1622929401.5731034-CDS-H-paniculata_contig1795:17192..172681622929401.5731034-CDS-H-paniculata_contig1795:17192..17268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 17193..17268 -
1691480845.0948265-CDS-H-paniculata_contig1795:17192..172681691480845.0948265-CDS-H-paniculata_contig1795:17192..17268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 17193..17268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1795.4319.1prot_H-paniculata_contig1795.4319.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1795 14293..17268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1795.4319.1

>prot_H-paniculata_contig1795.4319.1 ID=prot_H-paniculata_contig1795.4319.1|Name=mRNA_H-paniculata_contig1795.4319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=235bp
MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQ
NSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLL
KEQVEVNLDDVKKYDDADDADSGDNLDSSDSDDDSDDDEEALEKELEKIR
KEREEARKKKEREDAEVEEKRKREAAMTGNILLTQNTSSQVKRRWNDDVV
FKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK*
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mRNA from alignment at H-paniculata_contig1795:14123..17268-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1795.4319.1 ID=mRNA_H-paniculata_contig1795.4319.1|Name=mRNA_H-paniculata_contig1795.4319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3146bp|location=Sequence derived from alignment at H-paniculata_contig1795:14123..17268- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACAGCGCACAGGCCTACATGGGTCGCTGCTCAGGGTGCCGCATC TGATTCTGGGAATTGGTCAACCGGAGGTGAGAGGCTTTCCTTTCGTATTT TTTTCTTATAATAGTATTAATTGAGTTCAAGATTGAGACAGTTAGGTAAC TCCTTCACCAAAGGCTATTTCGGAACAAAAATGAATACAATTGTGCAGGA CGGTAGTTGTTGTGCGCAAACCAGTGCCAACTCCTTGTGTGTGCTGTGTG TATTGTGTATACTTACTTTGGATAGGCTTTTTGGGCGGCGGCAATTTCCG AAATCGGTAAATTTTTCATCTGGTGTTGTCGGGGACTTAGAGACTGGCGT CCAAAGGTCAACCATACTGGTAACATGTGTAGATGTTATGAATGTGTTTG TGTGTACCATGACTGTCCTATAGTGTAGCTCAATCCTCTCTTTCTCACAC CTGGCCCAGTAAGGTGACCTGAAGCGGCTCACTGTTTAGCGCTTGTTTTT CTTGTTTATGGGCAGGCCAAGCAAGCCAGGCAGTTTCATCGTGGGATTTG CCAAGCCAAACCAAGCTCAAGTTCAGACAAACAGGTCAAAACAGCGAGAG AGAGCTTCGAAAGCGGGATGCGCGGGCAGAAGTGGAAGACAGCGAGCGTC GTGCGTTCGATAGCAAACCAATTGGGAGCAGCCGACGCTACGGTATGAAA AAGTACAAGAGGTGAACGGTTCACCTCTTGGGGCAATCTGGTTCCATCGC TGAAGAAACATGTTTTCGTCAAGAGTAATGGATTGTGCATCAAAGTATAA ATGGCATTACAACGGGGCCGCACAGCACACGATCGATTTCATTCTCCAAC ATGGGCTCATTCTGTTGTTATTTGTCACAGACGAAGGAGGGGGCGGTCGA GGGCGGGAGCGCCTACAGCTTTTACTGAAAGAACAGGTTGAGGTTAATTT GGATGACGTTAAAAAATATGACGATGCTGATGATGCGGACAGTGGTGACA ACCTGGATAGCAGCGACTCGGATGACGATTCTGACGATGATGAGGAGGCG CTGGAGAAGGAGCTGGAAAAGATCAGGAAGGAGCGTGAGGAAGCCCGTAA AAAGAAGGTGCATTTGTGTCTCATTTCTTCTCCTGGCCTGGGGACATGTA CGCGAAGACCTTATTATTGTCTGTTTGCGTTGAGAGTTGAAAATACACTT GTGAGCCGGCGTTGGTGTGACTGGCAGTCAATTCGATGATACTTGCTGCT TTCGTTCTCTACATCGCAAATGCCCAGTGGCTATTGTCTGAGATCCGGCG ACCATACGGAAGTATCATACGTAGTGCTAGAATCAAGGAAGGACATGCTA TTTTCTTACACATACCCTGATTGAGATACGGTTCTAGTATCATCAAGATG CTATCCTGCTCCCTTCTCTGTTATTTGTACCTCAGCCTAACGCCGACGCG ATCACAGGTTGTTGCCGCCTTGCGCATTTGTTCCCCGTGTTATGACAGGA ACGCGAGGATGCTGAGGTGGAAGAGAAGAGAAAGCGGGTGAGAAATATTG AAACAGCAATAGACAGGAATGAGAAATCTTGTGTAGGATATGACATGATC ACCCATCAGCGTTCAGGAATGGTAGGTTGTAGCCATCCATAATTTTGCTT ATGCCAACACATTCTGTCCGGCACAATAACACACTTGAAAATCGCACTCC GCTGACGTTTTGCGTGCAGGAAGCCGCGATGACTGGCAACATTTTGCTGA CTCAAAACACCAGTTCGCAGGTCAAAAGAAGGTGAGCAGTTCGTTCGCGC CCCCCTCTGTTTCGATGCTGTTCAACCCTGTTTGTACGGGCAATCGTTTG TTTAACGTCATCCGCTTGTGCGCACGGTAATCCTTCGACAATTGCCACAA AAGGGTTCTTAGTCCACTTTTTATCGTGGGAGTTTCTTCCAGAGATTTTT CTTTTCACTTTTGTTCGAAAAACAAATCGCGGAAAAAGCCCATCTGTAAG TTATAGCCGAGCCCGAACAAAATATGTCAGTCATAATTGTATTGACAGTG GAGGAGCATCGTACTATATTCATTCAAATGTCACGCATGTTCCACCACGA TGAGGTAGGTCTTCGCGTACGCCGACTGTTTTTTAGTGCTGTTGCGAAAG AACTTTAACATATAACACTTATTCTCCAGAGTGAACACCACATACGTCAG CATTATGTATGTGATCATTTTTCCATGGGAACGACGGTAATATATTTGCA GTTGTGTATAACGGTTGCATACTGTATAACGTGAGACGGTTTGGTGCTCT AATCGTGGGAAAGTCTGCACGTATACATAAAACTCTGAAAAATAAATATA ACTTGTTTATCTTCAGTGTCGTATGTGTCTTTCGTCCCATGGCAGGATCG TCTGTTTCGGCTGTATTCGTAAACTAGGTGATCTTTTCAAAATGGACACT AAGCACAAAAATCGCCTCTGCACAGTTAAAATGACCCTGGTGGAATTGAG GGTTGTCTCAGAAAGTAGTGTAAGGCCTACTATCAGCACGTGTTCCAATC TGCGCGGAGAATACCTCGGGGTAAAATTTTAAAAAGAAATGCAAACCAGG ATCATAACTTGTCATTTCCTGTCCAAATACAACATGCAATGAATTCGGGG AACGAGAAGAAAGATTGGGGTGGGCATCGCCCTACTCTGTTTTGAATTGT TAGGTGACAGCGAAAGTTTTTTCCCATCGCTGCTTTTTATTTCACGATGA AAAATTATATATCTTGTGACAAACATATCGAAAAAAATGCGACGTTGGGT ATATTTGTATTTTGCACCCAAGACGCCATATCAAAACCCATATGCGCGGC AGGTGGAACGATGATGTGGTCTTCAAAGGTCAAGCAAGAACGGAGCCCGA GACCAAGAAGCGATTCGTTAACGACACCATTCGCAACGACTTCCACCGGC GTTTCCTTACGAAGTATATCAAGTAGAACAGCTGCGGCAGTGGCACCACT AATCTCGTGGGCATATTGATGGAAAGGCACTGAAATCACCATTGAATGCA ATGGGACTCTGTGAAGAGATGGTATGCTTGCGTAAATGTTTTGGGCTTGT AACAATGGAAAAATCTTTTTGGGAGGAACTTATCCTTACACAATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1795:14123..17268-

>mRNA_H-paniculata_contig1795.4319.1 ID=mRNA_H-paniculata_contig1795.4319.1|Name=mRNA_H-paniculata_contig1795.4319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig1795:14123..17268- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACAGCGCACAGGCCTACATGGGTCGCTGCTCAGGGTGCCGCATC
TGATTCTGGGAATTGGTCAACCGGAGATGACGACAGCGCACAGGCCTACA
TGGGTCGCTGCTCAGGGTGCCGCATCTGATTCTGGGAATTGGTCAACCGG
AGGCCAAGCAAGCCAGGCAGTTTCATCGTGGGATTTGCCAAGCCAAACCA
AGCTCAAGTTCAGACAAACAGGTCAAAACAGCGAGAGAGAGCTTCGAAAG
CGGGATGCGCGGGCAGAAGTGGAAGACAGCGAGCGTCGTGCGTTCGATAG
CAAACCAATTGGGAGCAGCCGACGCTACGGCCAAGCAAGCCAGGCAGTTT
CATCGTGGGATTTGCCAAGCCAAACCAAGCTCAAGTTCAGACAAACAGGT
CAAAACAGCGAGAGAGAGCTTCGAAAGCGGGATGCGCGGGCAGAAGTGGA
AGACAGCGAGCGTCGTGCGTTCGATAGCAAACCAATTGGGAGCAGCCGAC
GCTACGACGAAGGAGGGGGCGGTCGAGGGCGGGAGCGCCTACAGCTTTTA
CTGAAAGAACAGGTTGAGGTTAATTTGGATGACGTTAAAAAATATGACGA
TGCTGATGATGCGGACAGTGGTGACAACCTGGATAGCAGCGACTCGGATG
ACGATTCTGACGATGATGAGGAGGCGCTGGAGAAGGAGCTGGAAAAGATC
AGGAAGGAGCGTGAGGAAGCCCGTAAAAAGAAGACGAAGGAGGGGGCGGT
CGAGGGCGGGAGCGCCTACAGCTTTTACTGAAAGAACAGGTTGAGGTTAA
TTTGGATGACGTTAAAAAATATGACGATGCTGATGATGCGGACAGTGGTG
ACAACCTGGATAGCAGCGACTCGGATGACGATTCTGACGATGATGAGGAG
GCGCTGGAGAAGGAGCTGGAAAAGATCAGGAAGGAGCGTGAGGAAGCCCG
TAAAAAGAAGGAACGCGAGGATGCTGAGGTGGAAGAGAAGAGAAAGCGGG
AACGCGAGGATGCTGAGGTGGAAGAGAAGAGAAAGCGGGAAGCCGCGATG
ACTGGCAACATTTTGCTGACTCAAAACACCAGTTCGCAGGTCAAAAGAAG
GAAGCCGCGATGACTGGCAACATTTTGCTGACTCAAAACACCAGTTCGCA
GGTCAAAAGAAGGTGGAACGATGATGTGGTCTTCAAAGGTCAAGCAAGAA
CGGAGCCCGAGACCAAGAAGCGATTCGTTAACGACACCATTCGCAACGAC
TTCCACCGGCGTTTCCTTACGAAGTATATCAAGTAGGTGGAACGATGATG
TGGTCTTCAAAGGTCAAGCAAGAACGGAGCCCGAGACCAAGAAGCGATTC
GTTAACGACACCATTCGCAACGACTTCCACCGGCGTTTCCTTACGAAGTA
TATCAAGTAG
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