mRNA_H-paniculata_contig17932.4310.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17932.4310.1
Unique NamemRNA_H-paniculata_contig17932.4310.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17932.4310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17932contigH-paniculata_contig17932:1209..1820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17932.4310.1prot_H-paniculata_contig17932.4310.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17932 1369..1716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.4399335-UTR-H-paniculata_contig17932:1208..13681622929400.4399335-UTR-H-paniculata_contig17932:1208..1368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17932 1209..1368 +
1691480844.6775534-UTR-H-paniculata_contig17932:1208..13681691480844.6775534-UTR-H-paniculata_contig17932:1208..1368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17932 1209..1368 +
1622929400.4738934-UTR-H-paniculata_contig17932:1716..18201622929400.4738934-UTR-H-paniculata_contig17932:1716..1820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17932 1717..1820 +
1691480844.6971555-UTR-H-paniculata_contig17932:1716..18201691480844.6971555-UTR-H-paniculata_contig17932:1716..1820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17932 1717..1820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.4554315-CDS-H-paniculata_contig17932:1368..17161622929400.4554315-CDS-H-paniculata_contig17932:1368..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17932 1369..1716 +
1691480844.6865482-CDS-H-paniculata_contig17932:1368..17161691480844.6865482-CDS-H-paniculata_contig17932:1368..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17932 1369..1716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17932.4310.1

>prot_H-paniculata_contig17932.4310.1 ID=prot_H-paniculata_contig17932.4310.1|Name=mRNA_H-paniculata_contig17932.4310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MNRFNLVSQRLMKPIVSSTPEGFLSNYTDGQLRLSLHSFTFVYTRSTFTC
FFHTREHCVNQDLSSDCHFRSLFGRMFIISVRYYYYYFLPSHKHILTLFK
FPSVAKAMGRLITAL*
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mRNA from alignment at H-paniculata_contig17932:1209..1820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17932.4310.1 ID=mRNA_H-paniculata_contig17932.4310.1|Name=mRNA_H-paniculata_contig17932.4310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig17932:1209..1820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAATGGTATGCAATAATGGACGTTAAACCGAACGTTCACTCTAGTGTA
CCTGTATATGAACCCTAAGTGGATCATGCTCAGGAGCTACAAGTACAAGG
TAAATGGCATTGCATGGGCGTCTAATGTCTGACTAATCTGGTACGTGATT
TTCAAGTTAGATGAACCGCTTCAATCTGGTCAGTCAGCGCCTGATGAAGC
CGATTGTAAGCTCCACCCCTGAAGGATTCCTATCTAATTATACGGATGGT
CAACTTCGCTTGTCGTTGCACTCTTTCACCTTTGTATACACACGTAGCAC
TTTCACGTGTTTTTTTCACACACGAGAACATTGTGTCAATCAAGATTTAT
CAAGTGACTGTCACTTCCGCTCTCTTTTCGGACGCATGTTCATTATCTCC
GTACGTTATTATTATTATTATTTTTTACCGTCCCATAAACATATTCTCAC
TTTATTCAAATTTCCGTCGGTCGCGAAGGCGATGGGTCGATTGATCACAG
CCCTCTAAATAATAAATTTCACCTCTGCTATACCACGCACAGAGATATGT
TTCAACGACCCTGAGAAATTATATTCGAGCAGCACCCGTAACTAGCAACT
AATACTAGTATC
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Coding sequence (CDS) from alignment at H-paniculata_contig17932:1209..1820+

>mRNA_H-paniculata_contig17932.4310.1 ID=mRNA_H-paniculata_contig17932.4310.1|Name=mRNA_H-paniculata_contig17932.4310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig17932:1209..1820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCGCTTCAATCTGGTCAGTCAGCGCCTGATGAAGCCGATTGTAAG
CTCCACCCCTGAAGGATTCCTATCTAATTATACGGATGGTCAACTTCGCT
TGTCGTTGCACTCTTTCACCTTTGTATACACACGTAGCACTTTCACGTGT
TTTTTTCACACACGAGAACATTGTGTCAATCAAGATTTATCAAGTGACTG
TCACTTCCGCTCTCTTTTCGGACGCATGTTCATTATCTCCGTACGTTATT
ATTATTATTATTTTTTACCGTCCCATAAACATATTCTCACTTTATTCAAA
TTTCCGTCGGTCGCGAAGGCGATGGGTCGATTGATCACAGCCCTCTAAAT
GAACCGCTTCAATCTGGTCAGTCAGCGCCTGATGAAGCCGATTGTAAGCT
CCACCCCTGAAGGATTCCTATCTAATTATACGGATGGTCAACTTCGCTTG
TCGTTGCACTCTTTCACCTTTGTATACACACGTAGCACTTTCACGTGTTT
TTTTCACACACGAGAACATTGTGTCAATCAAGATTTATCAAGTGACTGTC
ACTTCCGCTCTCTTTTCGGACGCATGTTCATTATCTCCGTACGTTATTAT
TATTATTATTTTTTACCGTCCCATAAACATATTCTCACTTTATTCAAATT
TCCGTCGGTCGCGAAGGCGATGGGTCGATTGATCACAGCCCTCTAA
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