mRNA_H-paniculata_contig17926.4308.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17926.4308.1
Unique NamemRNA_H-paniculata_contig17926.4308.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17926.4308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17926contigH-paniculata_contig17926:3549..4430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size593
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17926.4308.1prot_H-paniculata_contig17926.4308.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17926 3549..3893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.1764576-CDS-H-paniculata_contig17926:3548..38931622929400.1764576-CDS-H-paniculata_contig17926:3548..3893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17926 3549..3893 -
1691480844.5187714-CDS-H-paniculata_contig17926:3548..38931691480844.5187714-CDS-H-paniculata_contig17926:3548..3893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17926 3549..3893 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.1930902-UTR-H-paniculata_contig17926:3893..40951622929400.1930902-UTR-H-paniculata_contig17926:3893..4095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17926 3894..4095 -
1691480844.535205-UTR-H-paniculata_contig17926:3893..40951691480844.535205-UTR-H-paniculata_contig17926:3893..4095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17926 3894..4095 -
1622929400.2044394-UTR-H-paniculata_contig17926:4386..44301622929400.2044394-UTR-H-paniculata_contig17926:4386..4430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17926 4387..4430 -
1691480844.5454175-UTR-H-paniculata_contig17926:4386..44301691480844.5454175-UTR-H-paniculata_contig17926:4386..4430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17926 4387..4430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17926.4308.1

>prot_H-paniculata_contig17926.4308.1 ID=prot_H-paniculata_contig17926.4308.1|Name=mRNA_H-paniculata_contig17926.4308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MQYLSDERTRESEPNILCGFTVRTSGGRESRSETGQNNIGRKSQIPCVPI
NSRTQDPISPVYPRSRCRSIFRNLFIHSVSDVNGTSSTPSLSSTGDRKRA
NVGPKADGHRTASEV
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mRNA from alignment at H-paniculata_contig17926:3549..4430-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17926.4308.1 ID=mRNA_H-paniculata_contig17926.4308.1|Name=mRNA_H-paniculata_contig17926.4308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=882bp|location=Sequence derived from alignment at H-paniculata_contig17926:3549..4430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGGTGCGT
ACGGAACCGCCAGCGTTACTCGCAATCGAAGGGTCAACAACGTGCAGCAT
ATCCCGAACAAAGATGTAGTAGCAGTGTCGGGCCATCGTCGTGCAGTGGC
TCTAGGCGTTTGCGCTCCGACGTGGCTGCATGTATATACACGTAGAAACG
TCGCACACACTCACGATATGCCTCAAGTCGTTATGATTAATAGTCGTACC
CTCGCTTTTCCCCCGTCGCCTCGCCGCCCCGCCCCCGTCGTCTCGCCTGT
CTTTGGACAACTGACACGCCTCCACCTTTCTTTAGAGCCCTTCCCCGAGA
TTCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGAGACCCTCCCAGCA
TGGCCACCTAGGTAAGGTTACTCGGTGATGTAAGGGCGGTGTGGTATAAG
GCGAATTTCCCGCTCGGACTCCGCCACATGCTGGTTTGTCGTGTCGCGTT
CGAGCGGTGCCGTCTAGTAGGGCGAAGATAGTGACAAATGCAGTATCTCT
CCGACGAACGAACAAGAGAGAGTGAACCCAATATCCTGTGTGGATTTACC
GTCAGGACGTCAGGTGGTAGGGAGTCCCGAAGCGAGACAGGGCAGAATAA
TATAGGACGGAAATCGCAGATACCGTGTGTCCCGATAAATTCCCGGACGC
AAGACCCAATATCACCCGTATACCCCCGCTCTCGTTGCCGTTCGATTTTC
CGTAATCTTTTCATACACTCGGTGTCCGACGTCAACGGGACCTCGTCGAC
TCCGAGTCTCTCGTCGACGGGGGACCGCAAGCGGGCAAATGTTGGTCCCA
AGGCCGACGGTCACCGGACGGCGAGCGAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig17926:3549..4430-

>mRNA_H-paniculata_contig17926.4308.1 ID=mRNA_H-paniculata_contig17926.4308.1|Name=mRNA_H-paniculata_contig17926.4308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig17926:3549..4430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTATCTCTCCGACGAACGAACAAGAGAGAGTGAACCCAATATCCT
GTGTGGATTTACCGTCAGGACGTCAGGTGGTAGGGAGTCCCGAAGCGAGA
CAGGGCAGAATAATATAGGACGGAAATCGCAGATACCGTGTGTCCCGATA
AATTCCCGGACGCAAGACCCAATATCACCCGTATACCCCCGCTCTCGTTG
CCGTTCGATTTTCCGTAATCTTTTCATACACTCGGTGTCCGACGTCAACG
GGACCTCGTCGACTCCGAGTCTCTCGTCGACGGGGGACCGCAAGCGGGCA
AATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTCATGCA
GTATCTCTCCGACGAACGAACAAGAGAGAGTGAACCCAATATCCTGTGTG
GATTTACCGTCAGGACGTCAGGTGGTAGGGAGTCCCGAAGCGAGACAGGG
CAGAATAATATAGGACGGAAATCGCAGATACCGTGTGTCCCGATAAATTC
CCGGACGCAAGACCCAATATCACCCGTATACCCCCGCTCTCGTTGCCGTT
CGATTTTCCGTAATCTTTTCATACACTCGGTGTCCGACGTCAACGGGACC
TCGTCGACTCCGAGTCTCTCGTCGACGGGGGACCGCAAGCGGGCAAATGT
TGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTC
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