mRNA_H-paniculata_contig17910.4304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: D8LGM6_ECTSI (RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM6_ECTSI) HSP 1 Score: 128 bits (321), Expect = 5.620e-35 Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 1
Query: 1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKV 228
ESL V AK TMV +N+RMVI+IA++YQHLGVPLTDLIQEGS+GL+RAVEKFDPERGFKLSTYSAWWIQQA+FKV
Sbjct: 74 ESLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKV 149
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A6H5LBV0_9PHAE (RNA_pol_sigma70 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE) HSP 1 Score: 131 bits (330), Expect = 6.800e-34 Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1
Query: 1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVI 231
ESL VC AK TMV +N+RMVI+IA++YQHLGVPLTDLIQEGS+GL+RAVEKFDPERGFKLSTYSAWWIQQA+FK I
Sbjct: 332 ESLKVCGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKGI 408
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A835YXH6_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.810e-28 Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1
Query: 16 CRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
C AK MV SN+R+VIA+AKRY +GVPL+DL+QEGS+GLIRA EK+DP +GFK STY+AWWIQQA+FK I + R I L +
Sbjct: 142 CLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKAIAYHSRTIRLPV 224
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A835ZEC7_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.070e-27 Identity = 50/80 (62.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query: 25 AKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
AK MV SN+R+VIA+AKRY +GVPL+DL+QEGS+GLIRA EK+DP++GF+ STY+AWWIQQA++K I + R I L +
Sbjct: 123 AKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPV 202
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2AXT5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXT5_9STRA) HSP 1 Score: 112 bits (281), Expect = 4.000e-27 Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1
Query: 19 RTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISL 258
R AK M+ SN+R+VI+IA+RYQHLGV L DLIQEGS+GLIRA EKFDP RGF+ STY++WWIQQAVF+ I F R I L
Sbjct: 259 RHAKDVMINSNMRLVISIARRYQHLGVSLQDLIQEGSLGLIRASEKFDPSRGFRFSTYASWWIQQAVFRSIAFHSRIIRL 338
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2Y444_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y444_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.140e-26 Identity = 48/80 (60.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query: 25 AKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
AK TMV+SN+R+V++IA++Y ++GV L DL+QEGS+GL RA EKFDP +GFK STY++WWIQQAVF+ I + R I L +
Sbjct: 8 AKQTMVQSNMRLVVSIARKYMNVGVSLHDLVQEGSLGLSRAAEKFDPLKGFKFSTYASWWIQQAVFRSIAYQSRTIRLPV 87
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2XUY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUY2_9STRA) HSP 1 Score: 108 bits (270), Expect = 4.340e-26 Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = 1
Query: 1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAV 219
+ LI+C A++TMV N+R+VI+IAK+YQ+LGV L DLIQEG+MGL+RA EKFDP+RGFK STY+AWWI+ AV
Sbjct: 158 DELILCHEARSTMVEHNMRLVISIAKKYQNLGVSLQDLIQEGAMGLVRATEKFDPKRGFKFSTYAAWWIRHAV 230
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A1Z5JZN1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZN1_FISSO) HSP 1 Score: 109 bits (273), Expect = 4.740e-26 Identity = 51/88 (57.95%), Postives = 70/88 (79.55%), Query Frame = 1
Query: 1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
E ++ CR AK MV+SN+R+V++IA++Y ++GV L DLIQEGS+GL RA EKFDP++GFK STY++WWIQQAVF+ I + R I L +
Sbjct: 375 ELMMTCREAKQKMVQSNMRLVVSIARKYSNVGVGLQDLIQEGSLGLSRAAEKFDPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPV 462
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.480e-25 Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 19 RTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVI 231
++AK M+ SNLR+VI+IAKRYQ G+ LTDLIQEGS+GL+RAVEKFDPE+GFK STYS WWI+QA+ + I
Sbjct: 230 QSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAI 300
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A2G9YNV6_9BACT (RNA_pol_sigma70 domain-containing protein (Fragment) n=1 Tax=Candidatus Omnitrophica bacterium CG23_combo_of_CG06-09_8_20_14_all_40_11 TaxID=1974756 RepID=A0A2G9YNV6_9BACT) HSP 1 Score: 103 bits (256), Expect = 1.610e-25 Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 25 AKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIF 234
A+ TM+R+NLR+VI IAKRY HLG P DLI+EG++GL++AV+KFDP +GF+ STY+AWW++QA+ + IF
Sbjct: 36 ARKTMIRANLRLVINIAKRYMHLGTPFLDLIEEGNLGLMKAVDKFDPRKGFRFSTYAAWWVRQAITRAIF 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17910.4304.1 >prot_H-paniculata_contig17910.4304.1 ID=prot_H-paniculata_contig17910.4304.1|Name=mRNA_H-paniculata_contig17910.4304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVback to top mRNA from alignment at H-paniculata_contig17910:4696..4959+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17910.4304.1 ID=mRNA_H-paniculata_contig17910.4304.1|Name=mRNA_H-paniculata_contig17910.4304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig17910:4696..4959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17910:4696..4959+ >mRNA_H-paniculata_contig17910.4304.1 ID=mRNA_H-paniculata_contig17910.4304.1|Name=mRNA_H-paniculata_contig17910.4304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig17910:4696..4959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |