mRNA_H-paniculata_contig1779.4252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1779.4252.1
Unique NamemRNA_H-paniculata_contig1779.4252.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: C5LKK9_PERM5 (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LKK9_PERM5)

HSP 1 Score: 61.2 bits (147), Expect = 4.910e-9
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = -1
Query:   19 EVYNNHAYDLLFEGDQVRARA-----LKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQVSDEG 282
            EVYN +AYDLL E    R        + + +D  G   +  LS HT LT + AL++       R  S+T  N  SSR HT++ +E+EQVSDEG
Sbjct:   98 EVYNENAYDLLCESVNPRTPIEHWPKVSLLEDENGEIVLRNLSLHTTLTEDDALDMFMLGNVNRMVSSTAANMASSRSHTVFTLEVEQVSDEG 190          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A1E4RSJ7_9ASCO (Kinesin-like protein (Fragment) n=1 Tax=Hyphopichia burtonii NRRL Y-1933 TaxID=984485 RepID=A0A1E4RSJ7_9ASCO)

HSP 1 Score: 57.8 bits (138), Expect = 3.020e-7
Identity = 35/111 (31.53%), Postives = 61/111 (54.95%), Query Frame = -1
Query:   31 RMENSVREVEAAGVDDKPRFCLHMRVAEVYNNHAYDLLFEGDQVRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQV 363
            ++ENSV          K ++ +++   E+YN    DLL E     ++ LK+R D    +R+ G++  T  T    L+L++   ++R+TSAT  NA+SSR H+I  ++L  +
Sbjct:  217 KIENSVD-------SSKKQYTINLSYLEIYNEKIIDLLSEVSSNSSQDLKIRDDPVYGTRIIGITSPTISTKSQMLDLIKNGDNKRKTSATDFNARSSRSHSILQVKLNTI 320          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A3P3XZZ1_PLABS (Kinesin-like protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3XZZ1_PLABS)

HSP 1 Score: 57.4 bits (137), Expect = 4.140e-7
Identity = 39/95 (41.05%), Postives = 51/95 (53.68%), Query Frame = -1
Query:   37 DDKPRFCLHMRVAEVYNNHAYDLLFEGDQVRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELE 321
            D   RF +     E+YN+   DLL  G      +L++R D      V GLSRH   T +  L L  RA   RQTS+T LN +SSR H+I M++LE
Sbjct:  329 DVSERFSVSASFVEIYNDTLRDLL--GGSAETSSLRIRGDNEN-IHVAGLSRHRVSTPDEVLVLCDRAAAARQTSSTALNQRSSRSHSIVMLQLE 420          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A1V9X3Z5_9ACAR (Kinesin-like protein n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X3Z5_9ACAR)

HSP 1 Score: 55.5 bits (132), Expect = 1.970e-6
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = -1
Query:   40 EVYNNHAYDLLFEGDQVRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMEL 282
            E+YN +  DLL  G    A++L +R+ G     + GLS H   TME  LEL+   + RR  S T+ NAKSSR H I+ + L
Sbjct:  231 EIYNENILDLLRPGKS-EAKSLDIRESGKNVF-ISGLSYHAVTTMEQILELIEEGSKRRSQSETQANAKSSRSHAIFQINL 309          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A6G1LM73_9PEZI (Kinesin-domain-containing protein n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LM73_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 2.680e-6
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = -1
Query:   22 MRVAEVYNNHAYDLLFEGDQVRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQVSDE 294
            M   E+YN+  +DL    D+  A  L +R  GTG+++V GL+     T++   +   +A   R TSAT+LNA SSR H I  +++ Q + E
Sbjct:  142 MSYYEIYNDRVFDLFEPPDKRTAAGLPIRDVGTGKTQVVGLTERPCTTLKEFEQAYDQANVNRSTSATKLNAHSSRSHAILCVKVIQTTGE 232          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A4P9WPI8_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WPI8_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 3.280e-6
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = -1
Query:    7 ERMENSVREVEAAGVDDKPRFCLHMRVAEVYNNHAYDLLFEGDQVRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQVSDEGGPEK 366
            +RM  S+ E +  GV+ +  F +     E+YN   YDLL   +     AL+VR        VEGL      T +    LV R T  R  ++T++NA SSR HTI +++  Q+S  G  EK
Sbjct:  126 DRMFTSMAEAKDPGVELQLTFSM----LEIYNEKVYDLL---NPAAGDALRVRNTTNTAFYVEGLKPFPVTTYQEIESLVDRGTRNRTVASTKMNASSSRSHTILILQFIQISKVGRTEK 238          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A167R973_PHYB8 (Kinesin-like protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167R973_PHYB8)

HSP 1 Score: 53.9 bits (128), Expect = 5.610e-6
Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = -1
Query:   34 PRFCLHMRVAEVYNNHAYDLLFEGDQVRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQ 312
            PR  +H+   E+YN    DLL +       ++ +R+D  G     G+      + E  L+ ++  T  R TSAT +NAKSSR H I+ + L+Q
Sbjct:   90 PRQTVHVSFVEIYNEELIDLLNQAPASERPSVTIREDTKGHIVCTGIKEMAVTSTEDVLKYLQMGTQNRATSATDMNAKSSRSHAIFTVLLKQ 182          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: W9YPZ5_9EURO (Kinesin motor domain-containing protein n=1 Tax=Capronia epimyces CBS 606.96 TaxID=1182542 RepID=W9YPZ5_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 7.170e-6
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = -1
Query:   19 EVYNNHAYDLLFEGDQ--VRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQVSDEG 282
            E+YN H  DLL   D        +++R+D  GR  VEGL+     T E  + ++   +  RQT AT +NA+SSR H ++ + L Q   +G
Sbjct:  250 EIYNEHPRDLLLPEDAPFTERANVQIREDPRGRIFVEGLNSVRVSTFEELIRVLNHGSAIRQTDATAINARSSRSHAVFTINLRQTKAQG 339          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A7S1YCY0_9EUKA (Kinesin-like protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1YCY0_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 8.170e-6
Identity = 36/101 (35.64%), Postives = 51/101 (50.50%), Query Frame = -1
Query:   19 DDKPRFCLHMRVAEVYNNHAYDLLFEGDQVRARALKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQVSDEG 321
            D    F +    AE+Y     DLL         +LKVR+D +    VEGL+ H+  +     EL+      R TSAT +NA SSR H+++M+ L Q S +G
Sbjct:  152 DPDVEFTIKASFAEIYLEKVKDLLNPRGAASGASLKVREDPSRGVWVEGLTEHSVQSANEIFELLALGEKCRATSATAMNAVSSRSHSVFMITLVQKSADG 252          
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Match: A0A150V537_9PEZI (Kinesin motor domain-containing protein n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150V537_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-5
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = -1
Query:   28 MRVAEVYNNHAYDLLFEGDQVRARA-LKVRQDGTGRSRVEGLSRHTPLTMEGALELVRRATDRRQTSATRLNAKSSRGHTIWMMELEQVS 294
            M   E+YN+  YDL FE  + R  A L +R  G G+++V GL+     T++   +L  +A   R TSAT+LNA SSR H I  +++ Q +
Sbjct:  142 MSYYEIYNDRVYDL-FEPPEKRTPAGLPIRDIGNGKTQVVGLTERPCTTLKEFEQLYDQANINRSTSATKLNAHSSRSHAILCVKIAQTT 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1779.4252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C5LKK9_PERM54.910e-940.86Kinesin motor domain-containing protein (Fragment)... [more]
A0A1E4RSJ7_9ASCO3.020e-731.53Kinesin-like protein (Fragment) n=1 Tax=Hyphopichi... [more]
A0A3P3XZZ1_PLABS4.140e-741.05Kinesin-like protein n=2 Tax=Plasmodiophora brassi... [more]
A0A1V9X3Z5_9ACAR1.970e-641.98Kinesin-like protein n=1 Tax=Tropilaelaps mercedes... [more]
A0A6G1LM73_9PEZI2.680e-636.26Kinesin-domain-containing protein n=1 Tax=Teratosp... [more]
A0A4P9WPI8_9FUNG3.280e-635.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A167R973_PHYB85.610e-633.33Kinesin-like protein (Fragment) n=1 Tax=Phycomyces... [more]
W9YPZ5_9EURO7.170e-635.56Kinesin motor domain-containing protein n=1 Tax=Ca... [more]
A0A7S1YCY0_9EUKA8.170e-635.64Kinesin-like protein (Fragment) n=1 Tax=Sexangular... [more]
A0A150V537_9PEZI1.270e-538.89Kinesin motor domain-containing protein n=1 Tax=Ac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1779contigH-paniculata_contig1779:14536..14901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929389.2943425-CDS-H-paniculata_contig1779:14535..149011622929389.2943425-CDS-H-paniculata_contig1779:14535..14901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1779 14536..14901 +
1691480841.6480563-CDS-H-paniculata_contig1779:14535..149011691480841.6480563-CDS-H-paniculata_contig1779:14535..14901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1779 14536..14901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1779.4252.1prot_H-paniculata_contig1779.4252.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1779 14536..14901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1779.4252.1

>prot_H-paniculata_contig1779.4252.1 ID=prot_H-paniculata_contig1779.4252.1|Name=mRNA_H-paniculata_contig1779.4252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
FFLLRPSLIGDLFQLHHPDCVPSARFRVEPCGRGLPAIRRPTNQLEGALH
SQGGVPAQSFHPAPPGAILSHFQRSCAHLIALEEQIISMVIVHLSDAHVE
AEARFVIHSCCLDLPYAVLHPF
back to top

mRNA from alignment at H-paniculata_contig1779:14536..14901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1779.4252.1 ID=mRNA_H-paniculata_contig1779.4252.1|Name=mRNA_H-paniculata_contig1779.4252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig1779:14536..14901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTCCTTCTCCGGCCCTCCCTCATCGGAGACTTGTTCCAGCTCCATCA TCCAGATTGTGTGCCCTCTGCTCGATTTCGCGTTGAGCCTTGTGGCAGAG GTTTGCCTGCGATCCGTCGCCCGACGAACCAGCTCGAGGGCGCCCTCCAT AGTCAGGGGGGTGTGCCGGCTCAATCCTTCCACCCGGCTCCTCCCGGTGC CATCCTGTCGCACTTTCAGCGCTCTTGCGCGCACCTGATCGCCCTCGAAG AGCAAATCATAAGCATGGTTATTGTACACCTCAGCGACGCGCATGTGGAG GCAGAAGCGCGGTTTGTCATCCACTCCTGCTGCCTCGACCTCCCGTACGC TGTTCTCCATCCTTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1779:14536..14901+

>mRNA_H-paniculata_contig1779.4252.1 ID=mRNA_H-paniculata_contig1779.4252.1|Name=mRNA_H-paniculata_contig1779.4252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig1779:14536..14901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTCCTTCTCCGGCCCTCCCTCATCGGAGACTTGTTCCAGCTCCATCA
TCCAGATTGTGTGCCCTCTGCTCGATTTCGCGTTGAGCCTTGTGGCAGAG
GTTTGCCTGCGATCCGTCGCCCGACGAACCAGCTCGAGGGCGCCCTCCAT
AGTCAGGGGGGTGTGCCGGCTCAATCCTTCCACCCGGCTCCTCCCGGTGC
CATCCTGTCGCACTTTCAGCGCTCTTGCGCGCACCTGATCGCCCTCGAAG
AGCAAATCATAAGCATGGTTATTGTACACCTCAGCGACGCGCATGTGGAG
GCAGAAGCGCGGTTTGTCATCCACTCCTGCTGCCTCGACCTCCCGTACGC
TGTTCTCCATCCTTTCTTCTTCCTTCTCCGGCCCTCCCTCATCGGAGACT
TGTTCCAGCTCCATCATCCAGATTGTGTGCCCTCTGCTCGATTTCGCGTT
GAGCCTTGTGGCAGAGGTTTGCCTGCGATCCGTCGCCCGACGAACCAGCT
CGAGGGCGCCCTCCATAGTCAGGGGGGTGTGCCGGCTCAATCCTTCCACC
CGGCTCCTCCCGGTGCCATCCTGTCGCACTTTCAGCGCTCTTGCGCGCAC
CTGATCGCCCTCGAAGAGCAAATCATAAGCATGGTTATTGTACACCTCAG
CGACGCGCATGTGGAGGCAGAAGCGCGGTTTGTCATCCACTCCTGCTGCC
TCGACCTCCCGTACGCTGTTCTCCATCCTTTC
back to top