mRNA_H-paniculata_contig17700.4224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17700.4224.1
Unique NamemRNA_H-paniculata_contig17700.4224.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 3.490e-94
Identity = 151/272 (55.51%), Postives = 197/272 (72.43%), Query Frame = 2
Query:  131 SSMTILAAVGSML--TTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDD-NCGVLLDSLCMEGAG-GCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYT---EDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVLPMGE------GIW 907
            SS+  L A+  +L  TT+T+T+AL+V TP+   +VV+G  Y + W GAS+D RFEIDL YCGSYS+CF++  CG  L ++C EG G GC   ++    V  PEPLGG S  GY++RIAEVG   D+ RCSDDFYL++S D P VG  G P+I VV+PTA+++AI+GE YTVEFDY+NGFG  +GRFKIDLY    EDG GDCG W+ S+CDKPD+GC DS G+Y+VV+P+ ++ GMYKIRVGLFG+D +YACS +FEV+          G+W
Sbjct:    3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAGLW 272          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 4.730e-91
Identity = 142/269 (52.79%), Postives = 190/269 (70.63%), Query Frame = 2
Query:  131 SSMTILAAVGSML-TTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDD--NCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFE-------VLPMGEGIW 907
            SS+  L A+  +L  T+T+T+ALRV TP+   SV +G  Y + W GA +D RFE+DL YCGSYSFCF +  +CG  + ++C E    C +  +    V  PEP+ G S +GY+VRI+EVG   D+ RCS+DFYLVAS DV   G  G P++ VV+P A ++A++GE YTVEFDY+NGFG  +GRFKIDLY  +G GDCG W+ S+CDKPD+GC+DS G+YDVV+P+ ++ GMYKIRVGLFG+D++YACS +FE       VL  G G+W
Sbjct:    3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLW 269          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 1.080e-84
Identity = 136/261 (52.11%), Postives = 185/261 (70.88%), Query Frame = 2
Query:  131 SSMTILAAVGSML-TTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFD--DNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVLPMGEGI 904
            SS+  +AA+  ML   +T T+ALRV TP+   +VV+   Y + W GAS D RFEIDL YCGSYSFCF+  D CG  + +LC EG   C    +    V +PEP+ G S SGY+VRI +VG   ++ RCSD+FYL++S D     G   P++ VV+P++ ++A++G  YTVEFDY+NGFG   GRFKIDLY  +GTGDCG W+ S+CDKPD+GC D+ G+YD+V+P  ++ GMYKIRVGLFG+D+V+ACS +FEV+P  +G+
Sbjct:    3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 4.160e-80
Identity = 128/232 (55.17%), Postives = 165/232 (71.12%), Query Frame = 2
Query:  191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
            AL V TP+EG  VVA  +Y +EWTG  S+ R+EIDL YCGS   C +D CG  + +LC  G  GC  D+ G +D++MPEP+ G SGSGYKVR+A+V    DS  CSD+FYL+A  + P  G  G P + V SP++   A +GEEYTVEFDY+NG G++VGRF IDLY+  G+GDCG ++ ++CDKP IGCKDS G+YDV +P  A+AGMY IRVG F +D+VY CS  FE+L
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.120e-77
Identity = 125/231 (54.11%), Postives = 166/231 (71.86%), Query Frame = 2
Query:  191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEV 883
            AL+V+TPS+G++V+A  +Y +EWTG SSD RFEIDL YCGS   C +D+CG  + +LC  G  GC  D+ G +D++MPEP+ G SGSGYKVR+ ++    D+  CSD+FYL+AS + P VG    P++ V SP +  +A +  EYTVEFDY+NG G++V RF IDLY  DG GDCG ++ SICDKP IGCKDS G+YDV +P   DAG YKIRV  F +D++Y+CS TF +
Sbjct:   19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 3.310e-77
Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 2
Query:  191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
            AL V TP+ G  VV+  +Y +EW+G  S+ RFEIDL YC S   C +D CG  + +LC  G  GC  D+ G +D++MPEP+ G SGSGYKVR+A+V    DS  CSD+FYL+A  D P     G P + V SP+    A +GEEYTVEFDY+NG G++VGRF IDLY   G+GDCG ++ ++CDKP IGCKDS G+YDV +P  A+AGMY IRVG F +++VY CS  FE+L
Sbjct:   20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.860e-72
Identity = 124/232 (53.45%), Postives = 156/232 (67.24%), Query Frame = 2
Query:  191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
            AL V TPS  + VVA  +Y +EWTGA S  RFEIDL +CGS   C +D+CG  + +LC  G  GC  D+ G +D++MPEP+ G S SGYKVR+ +V    DS+ CSD FYL+AS D P  G      + V SP     A +GEEYTVEFDY+NG G+ V RF IDLY  DG GDCG ++ SICDKP IGCKDS G+YDV +P+  +AG YKIRVG F ++ +Y CS TF ++
Sbjct:   19 ALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 3.430e-68
Identity = 120/232 (51.72%), Postives = 160/232 (68.97%), Query Frame = 2
Query:  191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
            AL V +P+ G  VVA S+Y +EWTGA+S  R++IDL YCGS   C +D CG  + +LC  G  GC  D+ G +DV+MPEP+ G S SGYKV + +     D   CS DF L+AS + P     GA  ++V SP+    A++G EYTVEFDY+NG G++V RF IDLY+  G+GDCG ++ +ICDKP IGCKDS G+YDVV+PS  ++GMY IRVG+F +D VY CS +FE++
Sbjct:   19 ALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.020e-67
Identity = 121/231 (52.38%), Postives = 155/231 (67.10%), Query Frame = 2
Query:  191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEV 883
            AL V +P  G+SV+A  +Y +EWTG ++  RFEIDL YC S  FC DD CG  + +LC  GA GC  DS G +D+IMPEP+ G S SGYKV +       D + CSDDF L+AS D P  G  G  S+ V SP+    A++GE YTVE+DY NGFG++  RF +DLY   GTGDCG ++ ++CD+P IGC DS G+YDV +PS   AGMY IRVG+F ++ +Y CS TFEV
Sbjct:   19 ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.120e-66
Identity = 118/233 (50.64%), Postives = 158/233 (67.81%), Query Frame = 2
Query:  191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTED-GTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
            AL V +P+ G+SV+A  +Y +EWTG S D+RFEIDL YCGS  FC +D CG  + +LC  GA GC  D+ G +D++MPEP+ G S SGYKV + +      S+ CS DF LVAS D P  G  G  S+ V SP+    A++G  YTVE+DY NG G++  RF IDLY+   GTGDCG ++ ++CDKP IGC DS G+YDV +PS   AGMY +RVG+F +D ++ CS+ FE++
Sbjct:   19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTS-SGYKVVVTD-SNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI3.490e-9455.51EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE4.730e-9152.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI1.080e-8452.11EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI4.160e-8055.17EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE1.120e-7754.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE3.310e-7753.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI1.860e-7253.45EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI3.430e-6851.72Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE1.020e-6752.38GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3F0_ECTSI1.120e-6650.64EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17700contigH-paniculata_contig17700:1026..4006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1490
Cds size792
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929383.9143708-UTR-H-paniculata_contig17700:1025..16021622929383.9143708-UTR-H-paniculata_contig17700:1025..1602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17700 1026..1602 -
1691480839.79476-UTR-H-paniculata_contig17700:1025..16021691480839.79476-UTR-H-paniculata_contig17700:1025..1602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17700 1026..1602 -
1622929384.0058918-UTR-H-paniculata_contig17700:3885..40061622929384.0058918-UTR-H-paniculata_contig17700:3885..4006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17700 3886..4006 -
1691480839.8605416-UTR-H-paniculata_contig17700:3885..40061691480839.8605416-UTR-H-paniculata_contig17700:3885..4006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17700 3886..4006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929383.929691-CDS-H-paniculata_contig17700:1602..17451622929383.929691-CDS-H-paniculata_contig17700:1602..1745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 1603..1745 -
1691480839.8065572-CDS-H-paniculata_contig17700:1602..17451691480839.8065572-CDS-H-paniculata_contig17700:1602..1745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 1603..1745 -
1622929383.94762-CDS-H-paniculata_contig17700:1927..20631622929383.94762-CDS-H-paniculata_contig17700:1927..2063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 1928..2063 -
1691480839.819442-CDS-H-paniculata_contig17700:1927..20631691480839.819442-CDS-H-paniculata_contig17700:1927..2063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 1928..2063 -
1622929383.9642947-CDS-H-paniculata_contig17700:2286..25891622929383.9642947-CDS-H-paniculata_contig17700:2286..2589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 2287..2589 -
1691480839.8331807-CDS-H-paniculata_contig17700:2286..25891691480839.8331807-CDS-H-paniculata_contig17700:2286..2589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 2287..2589 -
1622929383.9762359-CDS-H-paniculata_contig17700:2878..29691622929383.9762359-CDS-H-paniculata_contig17700:2878..2969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 2879..2969 -
1691480839.8426294-CDS-H-paniculata_contig17700:2878..29691691480839.8426294-CDS-H-paniculata_contig17700:2878..2969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 2879..2969 -
1622929383.9911747-CDS-H-paniculata_contig17700:3766..38851622929383.9911747-CDS-H-paniculata_contig17700:3766..3885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 3767..3885 -
1691480839.8520067-CDS-H-paniculata_contig17700:3766..38851691480839.8520067-CDS-H-paniculata_contig17700:3766..3885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17700 3767..3885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17700.4224.1prot_H-paniculata_contig17700.4224.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17700 1603..3885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17700.4224.1

>prot_H-paniculata_contig17700.4224.1 ID=prot_H-paniculata_contig17700.4224.1|Name=mRNA_H-paniculata_contig17700.4224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MSFSSMTILAAVGSMLTTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGAS
SDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIM
PEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPS
IAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGG
WIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQ
TFEVLPMGEGIWT*
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mRNA from alignment at H-paniculata_contig17700:1026..4006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17700.4224.1 ID=mRNA_H-paniculata_contig17700.4224.1|Name=mRNA_H-paniculata_contig17700.4224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2981bp|location=Sequence derived from alignment at H-paniculata_contig17700:1026..4006- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCCCCTCCCCATTCGTCTTCTCCTCTTTAGATAGTACGGAAGGTAGT ACAGCACTTCAGCAGGCCCAAGAATTGCACTGCACACCTACTCTTGTTCG TCAACCTCAGGTCATAGAATCATGAGCTTCTCAAGCATGACGATCCTGGC TGCTGTAGGGAGCATGCTCACAACAGTAACAACTACCCAGGCGCTGAGAG TCACCACGCCGTCAGAGGGCATGAGTGTGGTTGCTGGCAGGTCAGTACAA AGGATGTTCTCCCAGCCGTGGTCTATGTATGTACACTTGCGCGCGTATCA ACACTCCTTGTCGTAGTTGAGTATTGGGCTTGGTGTTTGCGTGGTATGTT GATTAGGAATCTACACCCCGCATGGCAAGGGGACGCCGGGTGCGCGCGGG GCAGGTGAATAAAATGAAGTATCACGATTGGTTTGAGGTCGTGGCGTTTA GGACGACATGACAACATGTCGACATATTAATCTAGACTCCAATCAAGGTT CGCGATATCTGTCGCGGCGATTAGCCTGTGTTTTAATCTTCTTGGCCCGC TAAGGTGGTGAAAGTGATTTTTGGTTCAACGACGATGGATTTTCTACTGT GTATTCTTCGATTGAATGTCGTTTGGCAATCGATATTGGTTGGTGACTAC ATCTAGGAGCTGTAACGGAATCGTTCGCTTTTTGCACCCAATACAGGGTA CGCTGTCGAGTGCAGCAAAAACCCTGCGTTATCATCATTGCGAGGTTACT TCAGTGGCTAATACGTGCGGTGTTGGCTCCCCATTCATGGAGAAAATTAG GAGACATTTCAACGGGTCAGAGTGGAAAATAGTGTATCACCGATTTTTCC TTTACAAACTCGCCCAAGCTCTTGACGAACAGTGGGGATGCTATTTCGGC GTCGTTCTGAGATTTTTCTGCCCCCCTAGAGCTCCGAGTGCTACGGTTGA TGGCTGATTCACGTATGACCTCTTCAGTTGATGTATCTTCCTCTCCTGTG CATCGCGTGGTTTTATTTAAATTGCTCTGTTTCGCAGCTCTTACCCCATT GAGTGGACGGGCGCCTCGTCGGACGCACGATTCGAAATCGACCTTACCTA CTGTGGCTCCTACTCGTTCTGCTTTGATGTGAGTATTACGTCGAACAGTG TAGAGCTCTAGTACAGTATTAATGGCATGAGCGGCGTAGGATCCCGCTGG GCAACGTAGTCATTACCGCCAGCGGCCCGATTCCAGCCGTACTGTACTTG CCCACATTGATATCAAGGACAAACACATCGTCTTGATTAACCCTCCACAA TGTACCCTCTACGTCACTGTACTGTCTTGTGATCATGTCTTGCCCTGGGC CCTCCGTGAGGATACGTGTTCATTCGCCACTTCGTCCGCACGAACTATGC CTCGTGCTCATTCACAGGATAACTGCGGTGTCCTCCTCGACAGCTTGTGC ATGGAGGGAGCTGGGGGTTGTGCTCTGGATTCAAATGGGGGTCATGATGT AATCATGCCAGAGCCACTAGGAGGGTTATCAGGTAGCGGCTACAAGGTAC GAATCGCAGAGGTTGGAGGGGGCTTTGACAGTGTCCGGTGCTCGGACGAC TTCTACTTGGTAGCGTCCAGAGACGTGCCCATGGTCGGGGGAGGTGGAGC TCCGTCCATCGCTGTGGTGTCTCCGACGGCCGAGTCCGTTGCTATTTCTG GGGAGGAGTACACAGTGGAGGTGAGCCGATAGGGGCTGACCTAGTGGTTG CTGTACCCGACCAATCTTGAAATTGTCTCAGCGGTGGTTTTTATGAAGAG AGCTATGGCGGCCCGTCAAATGTTCAGCTCTACTTATGAATCAGCCTGCC GTGGTGTAATGTATCTGTACTTTTTTTGAAACCCCAATTGGATATGAATC GTGCCCAACTCTGCTGCCATGATCGCTTCGTAATTCTGTTCAGTTTGATT ACAACAATGGGTTCGGCAACACGGTGGGACGGTTCAAAATCGATCTGTAC ACCGAAGACGGCACCGGTGACTGTGGAGGCTGGATTGGTTCCATCTGCGA CAAGCCTGACATCGGCTGCAAAGACTCGAGTGAGTTGTCATCCGTGCTAG ACGAAGCTGTAGCTTCGTGTTTGGTTGGATTTGCATGACACCCAGAAAAG GATGAATATTTCGATTTTGGAATGTTGAACCGATTTTTGTCTAGGTGTAT TAATAGCTTTGTGCTTCACTATTTTCTTCCCTTTTCCGCTTATAACGAAT TTTGTTTTCAGCTGGAAACTACGACGTGGTGATGCCGTCAGTGGCCGATG CCGGCATGTACAAGATCCGCGTGGGTCTGTTCGGCAACGACGCTGTGTAC GCTTGCTCCCAGACGTTTGAGGTCTTGCCGATGGGCGAGGGCATCTGGAC CTAAGTTTTTGACACTCTTTCATCATTTCTGATTTTGGCGATGAGGGCTG ATAAGTGTGTATCTGCATTTGGCCATTCAGCAATGGTATGAGACCAGTGC CAGTTGACGTACGGTGCGTTTCTCGCACGTAGTCAATACTTGTACATAAT TGTTCTAAGTTGCAATTCATTCGCAGTGTCTAGTGTGCGAGAGCATGTAG CAGAGAATGTTCTTTTCGTTATACGTCGCTAACACAAACTGTTGGTGCGT AATATTGTATGTGGCACTTACCCTTGGGTGAGTCGGTGCAGGTGTTGAAT TAATTAGGCGTACGTTTCAAGAAGGGATTCTTCTAGCGCAGTAAGTGCTC CGTGCGTCTAGTGGCTGTGATGAATATAAAAAATGGGACCCTTGGGTACC TGAAATTGCGAAGGTTATGGGTTCGTGAGCGGTGGTGGGGAATTTTGGAG AGTCCGGGAGTAGTAGTTTTACGATTCCAGGATATCGTGTTGAACAAACG GAATGTGTGGAGAAAATGACCAGTGGCCCTGTGATCAAATCAAGAAATGG AATCTTTATTTCCCTGTACATGCTAGTGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig17700:1026..4006-

>mRNA_H-paniculata_contig17700.4224.1 ID=mRNA_H-paniculata_contig17700.4224.1|Name=mRNA_H-paniculata_contig17700.4224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig17700:1026..4006- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTTCTCAAGCATGACGATCCTGGCTGCTGTAGGGAGCATGCTCAC
AACAGTAACAACTACCCAGGCGCTGAGAGTCACCACGCCGTCAGAGGGCA
TGAGTGTGGTTGCTGGCAGATGAGCTTCTCAAGCATGACGATCCTGGCTG
CTGTAGGGAGCATGCTCACAACAGTAACAACTACCCAGGCGCTGAGAGTC
ACCACGCCGTCAGAGGGCATGAGTGTGGTTGCTGGCAGCTCTTACCCCAT
TGAGTGGACGGGCGCCTCGTCGGACGCACGATTCGAAATCGACCTTACCT
ACTGTGGCTCCTACTCGTTCTGCTTTGATCTCTTACCCCATTGAGTGGAC
GGGCGCCTCGTCGGACGCACGATTCGAAATCGACCTTACCTACTGTGGCT
CCTACTCGTTCTGCTTTGATGATAACTGCGGTGTCCTCCTCGACAGCTTG
TGCATGGAGGGAGCTGGGGGTTGTGCTCTGGATTCAAATGGGGGTCATGA
TGTAATCATGCCAGAGCCACTAGGAGGGTTATCAGGTAGCGGCTACAAGG
TACGAATCGCAGAGGTTGGAGGGGGCTTTGACAGTGTCCGGTGCTCGGAC
GACTTCTACTTGGTAGCGTCCAGAGACGTGCCCATGGTCGGGGGAGGTGG
AGCTCCGTCCATCGCTGTGGTGTCTCCGACGGCCGAGTCCGTTGCTATTT
CTGGGGAGGAGTACACAGTGGAGGATAACTGCGGTGTCCTCCTCGACAGC
TTGTGCATGGAGGGAGCTGGGGGTTGTGCTCTGGATTCAAATGGGGGTCA
TGATGTAATCATGCCAGAGCCACTAGGAGGGTTATCAGGTAGCGGCTACA
AGGTACGAATCGCAGAGGTTGGAGGGGGCTTTGACAGTGTCCGGTGCTCG
GACGACTTCTACTTGGTAGCGTCCAGAGACGTGCCCATGGTCGGGGGAGG
TGGAGCTCCGTCCATCGCTGTGGTGTCTCCGACGGCCGAGTCCGTTGCTA
TTTCTGGGGAGGAGTACACAGTGGAGTTTGATTACAACAATGGGTTCGGC
AACACGGTGGGACGGTTCAAAATCGATCTGTACACCGAAGACGGCACCGG
TGACTGTGGAGGCTGGATTGGTTCCATCTGCGACAAGCCTGACATCGGCT
GCAAAGACTCGATTTGATTACAACAATGGGTTCGGCAACACGGTGGGACG
GTTCAAAATCGATCTGTACACCGAAGACGGCACCGGTGACTGTGGAGGCT
GGATTGGTTCCATCTGCGACAAGCCTGACATCGGCTGCAAAGACTCGACT
GGAAACTACGACGTGGTGATGCCGTCAGTGGCCGATGCCGGCATGTACAA
GATCCGCGTGGGTCTGTTCGGCAACGACGCTGTGTACGCTTGCTCCCAGA
CGTTTGAGGTCTTGCCGATGGGCGAGGGCATCTGGACCTAACTGGAAACT
ACGACGTGGTGATGCCGTCAGTGGCCGATGCCGGCATGTACAAGATCCGC
GTGGGTCTGTTCGGCAACGACGCTGTGTACGCTTGCTCCCAGACGTTTGA
GGTCTTGCCGATGGGCGAGGGCATCTGGACCTAA
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