mRNA_H-paniculata_contig17698.4217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17698.4217.1
Unique NamemRNA_H-paniculata_contig17698.4217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17698.4217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17698contigH-paniculata_contig17698:1159..3870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.5616386-CDS-H-paniculata_contig17698:1160..13721622929382.5616386-CDS-H-paniculata_contig17698:1160..1372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17698 1161..1372 -
1691480839.1986248-CDS-H-paniculata_contig17698:1160..13721691480839.1986248-CDS-H-paniculata_contig17698:1160..1372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17698 1161..1372 -
1622929382.57829-CDS-H-paniculata_contig17698:3656..38701622929382.57829-CDS-H-paniculata_contig17698:3656..3870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17698 3657..3870 -
1691480839.2064712-CDS-H-paniculata_contig17698:3656..38701691480839.2064712-CDS-H-paniculata_contig17698:3656..3870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17698 3657..3870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17698.4217.1prot_H-paniculata_contig17698.4217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17698 1161..3870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17698.4217.1

>prot_H-paniculata_contig17698.4217.1 ID=prot_H-paniculata_contig17698.4217.1|Name=mRNA_H-paniculata_contig17698.4217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
SKRQRLCLAPSRPNPRSLRLMMVSRKRAAAIVCILGGGGGGCAPCSGFVV
GPPAPRQQVSRAAASWHTGVDYGVSSAGARRSAAGLRTTRMQSACGGGGN
GGGDSGVSRAGGPSGIGSSGQRAGKRRSLERLLMANAGGVEE
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mRNA from alignment at H-paniculata_contig17698:1159..3870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17698.4217.1 ID=mRNA_H-paniculata_contig17698.4217.1|Name=mRNA_H-paniculata_contig17698.4217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2712bp|location=Sequence derived from alignment at H-paniculata_contig17698:1159..3870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAAAAGGCAGCGATTGTGCCTTGCACCTAGCCGACCAAACCCCCGGTC
TTTACGTCTCATGATGGTGTCGAGAAAAAGGGCTGCTGCTATTGTATGCA
TACTTGGTGGGGGCGGAGGAGGGTGCGCACCATGCTCTGGATTTGTGGTA
GGCCCACCTGCTCCGCGCCAACAGGTCTCTCGAGCTGCTGCCAGCTGGCA
CACAGGTGTCGACTGTAAGTAGTCTAGTGAGGTAGTCATCTCTCTCTATC
ATGCTGCTTTCTGCTGTGTAATGGTACTGCAATATGCCCTCCCCTTACAC
GATAGACCCGCGTAATGCGCGAGCTAGATACATTCAGTTATCACCCTGTC
CAAGCGTTCAAAGTTTTTCTCTGCGCCCTGCCGTGTTGTGATGGAGGGGG
GGGGGCTGTACATTTTGTTCACTCATATTGAAGTACGGTCAGTGCAAGTC
AGTGATGTGTGTGTGCCTGTGTGTGTGTGCTGTATTGTGTACGCTTGTTT
TCGCCTGCCGAACACTTTGCTGTACATGCATACATGCGTTGATTGGAGAT
TACACCAACCTCGTGTACAACAGAAAAGTGTGCGAAAGAGTAGTTGGGTT
GTAAGGCAGGTGTGTGCTGATTGCGATGGGTTCGCTGCAGACTCATCAAA
CCGCGTGTAGCTGAAACAGGCTTCGGCAGCAGCCCCAGACTTCAGTATGC
TCCATGTATGTCGCAGGACTCCTTAATTGTGTAATTGTGTTAGAGGGGCG
ATACACGGGATATGCCCTCTATGTACAAGAGTCGGTGAGTGCCACGAGGA
CTGAGGTTTTGTATAGATTACTTCGCTGCTGTAGTAGAAAAAATGCCACG
TTGCAATGCAGGGTACGCCAATCTGGAGCCGCCCCATGCACTGCACGTGC
GTGTATGTAGTGAAGATCTTTGCACAGTACCAAGCTGCAGGATCCCTTCG
CCGCTCCGTATTTCTGTCACATAGTGCACGATAAAAAGACGTACAGTAAG
ACAATAGACTATTGTAGTCTGCTATACCGTACAAACAGTAAGTATGTTTT
CTATCTCTCCGCTAAATACCTCGGCCACTCTCTCTTTTCCTACAGCTAGG
AGAACACGGTATTCGTTCGTTGTGGCAGCAAGCGCTACACACCGGAGACG
TGTTTGCAGGCCATCGTGTGAGATTTGGGGACAGCTACTACTTGTAGTGT
ACTGTTTGTTGTTGCTGGCTTATCTTGCATGCAGTTCACACGAGTCTTGC
AACTTGCAACCAACACTTTCCCGCAACTTGCAACTTGCAACTTGTTGTAC
CTGTCAGCTTGAATAAATGTTATTGATACCAATGCAGTAGATACGGTAGC
GTACAAGTAGATGACAAAGAACACCTGGCGTGATCTAAATGGTTATCCGA
ACTAGATTTTCTCGAAACACAAAGTCAACCCCCCATATATCCAATGACAA
ATAGGTACTCACGAGAGTAGTCCAACGAAACAACTTGTGGCGTCACGATC
GTCGCCCACAGGTTTCGAGAAAATTGAGCTTGAAAAAACGAAGAATTGCC
GTACGAGGTGTTGATCCTTCGAGCGAAAACACTGACGGTTCGATGGGTGA
AGCTGGCTGCACCGAGTATATTTTGGGGGGGGGGGGGGGGGTACAGAAAG
TTACACCAAGGCTTGTTACCTGGACCTGACAACAACATTAATCCGATCAT
GGTTGACCTTTTTATCAGAGGGGCGTTACGTTTTGTTTTTTCGTTCAGAC
TTCGGACTTGTTCCCCCCTCCTCCATTTTTTTGTTCATCACACTTGGAAA
CCCTTGCTGGCTTTCACCAACGCACGATCTTCGCCACAACTCTGTACGGT
CTTCTTGTAGCAGCTATTTTAGGCCCGTATTGATCAATCGCTCTCTCTAC
TAAAATGGGAAAAAATCGAAAACGGCTTTGATATCCACAGCTCTTATTAT
CTCATTTCGGGCTTGTTTTATCTCTCGCCCACTCAACACAACAGACAGTG
AGTACTATGTTGTGTACACATGGTAAACACATTTTCTCTCACAGGGCGGT
TGTACTGGTCAATGTAGATGTGACTTGAGCTACCCCTCCTCTAATTTTTA
ATCATTAAAGGTACCCCTAGTATATTCCAATCTTGCTTTTATGGGTATTG
TCATGTTTCAATGTACATTTTCTGCTTTTCCGACCAAAATCTCCCAATGC
TCCCAAACCGCGTTCCTTGTTGAATCATTTTCGAAGCCACATAACGTCAG
CTTGGCACCCCGTGGCCTGGAACATGACTATTTTCAAGCAAAGGGGGGCG
CGCACAACTGCCGCCAACAAAATTCTCACAGCAGCAAACAATCGCAACTT
ACAATGGGCTACGGATTGTGGTCTCTCGCTCTTGCTCTCCCTCTCTCTTT
CTGTCCATCGAGTGCATTAGTCTTCCGTTGTATGCCTTTCTAGATCGAGT
ACCCATAACCTGGACTCTAACTATCTAAAACTCCTTATTGCACCCTAGAC
GGCGTATCGTCCGCGGGAGCACGGCGTTCCGCGGCAGGCTTGAGAACAAC
CCGGATGCAAAGTGCTTGCGGCGGTGGTGGTAACGGGGGCGGCGACAGCG
GCGTGAGCCGCGCGGGTGGGCCTTCAGGAATCGGCTCTTCCGGGCAGCGG
GCTGGGAAGAGGCGATCGCTGGAGCGGCTGCTGATGGCGAATGCCGGTGG
GGTCGAGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17698:1159..3870-

>mRNA_H-paniculata_contig17698.4217.1 ID=mRNA_H-paniculata_contig17698.4217.1|Name=mRNA_H-paniculata_contig17698.4217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig17698:1159..3870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAAAAGGCAGCGATTGTGCCTTGCACCTAGCCGACCAAACCCCCGGTC
TTTACGTCTCATGATGGTGTCGAGAAAAAGGGCTGCTGCTATTGTATGCA
TACTTGGTGGGGGCGGAGGAGGGTGCGCACCATGCTCTGGATTTGTGGTA
GGCCCACCTGCTCCGCGCCAACAGGTCTCTCGAGCTGCTGCCAGCTGGCA
CACAGGTGTCGACTAGCAAAAGGCAGCGATTGTGCCTTGCACCTAGCCGA
CCAAACCCCCGGTCTTTACGTCTCATGATGGTGTCGAGAAAAAGGGCTGC
TGCTATTGTATGCATACTTGGTGGGGGCGGAGGAGGGTGCGCACCATGCT
CTGGATTTGTGGTAGGCCCACCTGCTCCGCGCCAACAGGTCTCTCGAGCT
GCTGCCAGCTGGCACACAGGTGTCGACTACGGCGTATCGTCCGCGGGAGC
ACGGCGTTCCGCGGCAGGCTTGAGAACAACCCGGATGCAAAGTGCTTGCG
GCGGTGGTGGTAACGGGGGCGGCGACAGCGGCGTGAGCCGCGCGGGTGGG
CCTTCAGGAATCGGCTCTTCCGGGCAGCGGGCTGGGAAGAGGCGATCGCT
GGAGCGGCTGCTGATGGCGAATGCCGGTGGGGTCGAGGAGACGGCGTATC
GTCCGCGGGAGCACGGCGTTCCGCGGCAGGCTTGAGAACAACCCGGATGC
AAAGTGCTTGCGGCGGTGGTGGTAACGGGGGCGGCGACAGCGGCGTGAGC
CGCGCGGGTGGGCCTTCAGGAATCGGCTCTTCCGGGCAGCGGGCTGGGAA
GAGGCGATCGCTGGAGCGGCTGCTGATGGCGAATGCCGGTGGGGTCGAGG
AG
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