mRNA_H-paniculata_contig17688.4215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
VS+ + KT +DGK+EK+K RLVA G QI ++D+ S P P++AS K+ML+V
Sbjct: 45 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 100
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5JSU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU1_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.300e-7 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
VS+ + KT +DGK+EK+K RLVA G QI ++D+ S P P++AS K+ML+V
Sbjct: 352 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 407
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.320e-7 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
VS+ + KT +DGK+EK+K RLVA G QI ++D+ S P P++AS K+ML+V
Sbjct: 1434 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 1489
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7 Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 3
Query: 9 LVVSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
L VS+ Y KT ++GKV+K+K RL+A G QI ++D+ S P P++AS K+ML+V
Sbjct: 342 LPVSSKWCYSWKTNKEGKVDKFKARLLARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 399
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV5_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 1.790e-7 Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
VS + KT ++GK++K+K RLVA G QI ++D+ S P P++ASTK+ML+V
Sbjct: 741 VSPKWCFSWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASTKLMLAV 796
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 4.170e-7 Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
VS+ + KT +DGK+EK+K RLVA G +I ++D+ S P P++AS K+ML+V
Sbjct: 163 VSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAV 218
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 4.490e-7 Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
VS+ + KT ++GK+EK+K RLVA G QI ++D+ S P P++AS K+ML+V
Sbjct: 163 VSSKCRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 218
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 1.570e-6 Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
VS+ + KT ++GK++K+K RLVA G QI ++D+ S P P++AS K+ML+V
Sbjct: 123 VSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 178
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD) HSP 1 Score: 52.4 bits (124), Expect = 2.950e-6 Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 3
Query: 3 NTLVVSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSVVAIQD 197
NT ++ +M LYK K +G++ +YK RLVANGN Q+ +D E P A+ + +L V D
Sbjct: 445 NTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVLHVATAYD 509
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: T1IMU7_STRMM (Integrase catalytic domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IMU7_STRMM) HSP 1 Score: 52.4 bits (124), Expect = 2.960e-6 Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 3
Query: 12 VVSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSVVAI 191
V+ +YKRKT G + KYK RLVA G +QIK ID++E P + +++L++ AI
Sbjct: 500 VIGCKWIYKRKTDPAGHIIKYKARLVAQGFKQIKGIDYEESYSPVVRLTTIRVILALAAI 559 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17688.4215.1 >prot_H-paniculata_contig17688.4215.1 ID=prot_H-paniculata_contig17688.4215.1|Name=mRNA_H-paniculata_contig17688.4215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp MMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMback to top mRNA from alignment at H-paniculata_contig17688:2590..2786+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17688.4215.1 ID=mRNA_H-paniculata_contig17688.4215.1|Name=mRNA_H-paniculata_contig17688.4215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=197bp|location=Sequence derived from alignment at H-paniculata_contig17688:2590..2786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17688:2590..2786+ >mRNA_H-paniculata_contig17688.4215.1 ID=mRNA_H-paniculata_contig17688.4215.1|Name=mRNA_H-paniculata_contig17688.4215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig17688:2590..2786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |