mRNA_H-paniculata_contig17576.4178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17576.4178.1
Unique NamemRNA_H-paniculata_contig17576.4178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17576.4178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17576contigH-paniculata_contig17576:398..1985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17576.4178.1prot_H-paniculata_contig17576.4178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17576 398..1985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.513574-CDS-H-paniculata_contig17576:397..4841622929377.513574-CDS-H-paniculata_contig17576:397..484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17576 398..484 +
1691480837.276513-CDS-H-paniculata_contig17576:397..4841691480837.276513-CDS-H-paniculata_contig17576:397..484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17576 398..484 +
1622929377.531941-CDS-H-paniculata_contig17576:1387..15641622929377.531941-CDS-H-paniculata_contig17576:1387..1564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17576 1388..1564 +
1691480837.285405-CDS-H-paniculata_contig17576:1387..15641691480837.285405-CDS-H-paniculata_contig17576:1387..1564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17576 1388..1564 +
1622929377.54716-CDS-H-paniculata_contig17576:1895..19851622929377.54716-CDS-H-paniculata_contig17576:1895..1985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17576 1896..1985 +
1691480837.294051-CDS-H-paniculata_contig17576:1895..19851691480837.294051-CDS-H-paniculata_contig17576:1895..1985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17576 1896..1985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17576.4178.1

>prot_H-paniculata_contig17576.4178.1 ID=prot_H-paniculata_contig17576.4178.1|Name=mRNA_H-paniculata_contig17576.4178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MRRSAHRDEKGGLNPQAREIWQHMVSCSLDGSVRIHSLPKAVPLSPLKML
SPWWNLQSTRGAVAVARPSSLSRDTLLEWGIYRDAYTQAAPGIFRVPMRP
QSQQPQPSAAPGAGHGTG
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mRNA from alignment at H-paniculata_contig17576:398..1985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17576.4178.1 ID=mRNA_H-paniculata_contig17576.4178.1|Name=mRNA_H-paniculata_contig17576.4178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1588bp|location=Sequence derived from alignment at H-paniculata_contig17576:398..1985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACGTTCGGCACACCGCGACGAAAAGGGCGGTTTAAATCCACAAGC
GCGGGAGATTTGGCAGCACATGGTGTCCTGCTCACTGGTAAAGCTAATTC
CACTACAGTATGGTAATCGCGCGTGGCGATGTAAGCGTACTGGAAAAAAG
ATTATTTGTCATTGGCCGTATCGCGCTCCAATTGGAATCGAAAAACCACC
GTGCGTTCATATTTTGGCTCGATCGATTCAAAGTGGATGCTTGCTCATCA
CTGCAAAAACAGCCTATGATACTGCATATGCTGGAGTCTGCTTGCAACAC
TCCCCACACCGGCGAAGACTCGCGTCGGCAATATACCAATAGGCGTGTGA
ACTGCCGCACGCTAGTACTGTACTGTCGCACGAGGTGTTGCCGCAGTGTT
GGCATGAGATGGATGCTCCCTTCAATCGTTGACAAACCTACTAGCGTGCT
ACAATTACTGATACCGGCATCTCCGATTCGATACCATAGTGTGTGTGTGT
TGGAGATGTCTGTGTGTGTTACATGTTTGTGCCTTTGGTGTTGCTGGAAA
CTTCTCGGCCCATAAAGGTACACACCAGCTTCTATAATACTCCGTTGATC
GATACCAGTGTTTGCCATGCTCAGCTAGGAAAAAGCATTTTGATCGGTCG
TTACTCCGATGGACACATGCATTGGGTTACACCCACTATGTATCAATACG
CGTGCTGCTAGTTGCTGTTCGCCGTTGGGACTGTGTTTGAACTAAAAGAC
AACAACATTCGGATATAGCGTCAGATAAACCAGACATTCTAGTTATCCTT
CAAGTACACCTTGCCTGGTTGTGCCTGTCCAATGTTGTGCTGGTCGTTAG
ATCCGCTCTTGTTGAATATCTGATCAAAACTTGACTACAACTGTACCACC
GTTTGTCATTGAAACGGATGATTGATAGATCTTCTGCCCCAATTTGCCAT
CCTTGACTGGAACCATCGACACGGTTACGTTAACCCGTAGGACGGTTCGG
TGAGGATACATTCTCTACCCAAGGCTGTTCCGCTGTCGCCTTTGAAGATG
CTGTCCCCGTGGTGGAACCTGCAGAGCACGCGCGGAGCCGTGGCTGTTGC
GAGGCCCAGTAGCCTTTCACGAGACACCTTGTTGGAGTGGGGCATTTATC
GAGATGCGTACACGCAGGTATAGTGGTATTGTGTTGTGGTCAAGTGGGGG
TTGCTATTGTCTCATGATCCATGATGTTTTATGATGACGATTTTTCAGCT
GTATTTTTTTGCCTAGTTATTCATGATCGGGGGCAATGTTAGTATAATGG
GTACAAATATTAAAGCTGTACATTTTGTTGAGAACTCTAGCGAGCGAAGG
CGTCACGATGGTGTTGAAGTATTGACAAGCGCAAACCAGAAATACTAATA
CTTTCTTGTGACTATCTCTAAACGGATATATGTACATATATATATATATA
TAAATGAATTTCATGTGACTATCTCTAAAATATCGATCTGAACTTCAGGC
CGCCCCCGGAATTTTCAGAGTGCCCATGCGACCGCAGTCGCAGCAGCCTC
AACCGTCAGCAGCACCTGGAGCTGGTCATGGAACTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17576:398..1985+

>mRNA_H-paniculata_contig17576.4178.1 ID=mRNA_H-paniculata_contig17576.4178.1|Name=mRNA_H-paniculata_contig17576.4178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig17576:398..1985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACGTTCGGCACACCGCGACGAAAAGGGCGGTTTAAATCCACAAGC
GCGGGAGATTTGGCAGCACATGGTGTCCTGCTCACTGATGCGACGTTCGG
CACACCGCGACGAAAAGGGCGGTTTAAATCCACAAGCGCGGGAGATTTGG
CAGCACATGGTGTCCTGCTCACTGGACGGTTCGGTGAGGATACATTCTCT
ACCCAAGGCTGTTCCGCTGTCGCCTTTGAAGATGCTGTCCCCGTGGTGGA
ACCTGCAGAGCACGCGCGGAGCCGTGGCTGTTGCGAGGCCCAGTAGCCTT
TCACGAGACACCTTGTTGGAGTGGGGCATTTATCGAGATGCGTACACGCA
GGACGGTTCGGTGAGGATACATTCTCTACCCAAGGCTGTTCCGCTGTCGC
CTTTGAAGATGCTGTCCCCGTGGTGGAACCTGCAGAGCACGCGCGGAGCC
GTGGCTGTTGCGAGGCCCAGTAGCCTTTCACGAGACACCTTGTTGGAGTG
GGGCATTTATCGAGATGCGTACACGCAGGCCGCCCCCGGAATTTTCAGAG
TGCCCATGCGACCGCAGTCGCAGCAGCCTCAACCGTCAGCAGCACCTGGA
GCTGGTCATGGAACTGGTGCCGCCCCCGGAATTTTCAGAGTGCCCATGCG
ACCGCAGTCGCAGCAGCCTCAACCGTCAGCAGCACCTGGAGCTGGTCATG
GAACTGGT
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