mRNA_H-paniculata_contig17560.4171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 192 bits (487), Expect = 2.010e-51 Identity = 117/293 (39.93%), Postives = 162/293 (55.29%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQ--RGTSRMFGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDH----EESRLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGRVSESQ 852
WLA++L+P+LNH+ E RG + GD +T E H S RL G+LE LA+ LWP ++ YVL L +GL +PL D LVV LRL E RP V +EL D LSV WK+ GVPPGAIE++++ CC LGT + +WRFGVLV L ++YS DK EV + V+G ++ A WA + +V + M +FPGLRW A+L CP H Q++ R GD+ + C+ C G G A LLE+ D+++ + Q V GR+ ++Q
Sbjct: 630 WLAQILKPLLNHRDDEDPLRGDVSL-GDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWPDGLSNYVLPALDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDHTAVLSVKWKVFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQGSLGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHEQDMQISKAATRPGDKSLFGAT-CSLCDSKTGGLGAAAMSLLEIVDVHECVDKIFQEVAGRLVQAQ 920
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE) HSP 1 Score: 189 bits (479), Expect = 2.400e-50 Identity = 108/292 (36.99%), Postives = 159/292 (54.45%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQRGTSRMFGDAELTEPWHSH--SLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEES----RLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGRVSESQR 855
WLAK+L+P+LNH+ E S GD +T H S +R + G+L+ LA LWP + +YVL L+ +GLA L G LVV LRLG+ RP V +EL D + SV WK+ GVPPGA+E++++ CC +G + +WRFGVLV + + + ++YS E+ + V+G++ WA + + VR M FPGLRW ASL CP+H Q++ + R GD+ + + CT C G G A+ELL++ D+ + + V GR + QR
Sbjct: 733 WLAKILKPLLNHREDEDFFGSLSLGDTGITLDGHKDKVSWQRFKQTGVLKPELAGLLWPGDLCDYVLRTLESLGLAHQLDDRFAGGLVVLLRLGKERPASVGKELDDFRRDHEAIFSVTWKISMGVPPGAVEKVLTRCCSIGELRTFWRFGVLVQGNMGGVTAGKTFAMLVEYSHKGSEIDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEHKQDMPISNTATRPGDKLLLEHG-CTLCSSETGGVGAAATELLQMVDVLQNRDKMFREVHGRFVDLQR 1023
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 187 bits (475), Expect = 8.000e-50 Identity = 118/293 (40.27%), Postives = 159/293 (54.27%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQ--RGTSRMFGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDH----EESRLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGRVSESQ 852
WLA++L+P+LNH+ E RG + GD +T E H S RL G+LE LA LWP ++ YVL L +GL +PL D LVV LRL E RP V +EL D LSV WK+ GVPPGAIE++++ CC LGT + +WRFGVLV + L ++YS D EV + V+G + A WA + +V + M +FPGLRW ASL CP H Q++ RRGD+ + C C G G A +LLE+ DI G ++ V R+ ++Q
Sbjct: 594 WLAQILKPLLNHRDDEDPLRGDVSL-GDTGITLKEDKHIASWNRLKGHGVLEPELAGVLWPDGLSNYVLPTLDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDHTAVLSVKWKIFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQGSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHEQDMQISRTATRRGDKLLHGAT-CNLCDSETGGLGAAAIDLLEMVDIRRSRGDLVRAVNRRLVKAQ 884
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 183 bits (464), Expect = 8.740e-49 Identity = 99/275 (36.00%), Postives = 149/275 (54.18%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQRGTSRMFGDA-----ELTEPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
WLA++L+P+LNHK E GD L +P S RL ++G+LE RLA +WP ++EYVL L +G FPL D LVV LRL RP V + + + S WK+ GVPPGA+E++++ CC LG + +WR+GVLVH ++ R + L+YS+ E+ ++GD++ AW + V + V+ M + FPGLRW SL CP+H ++ + + +R GD+ ++ C C + G G A +L+ DI
Sbjct: 229 WLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDIKSWDRLKKEGVLEPRLAYAMWPDGLSEYVLPTLASLGFTFPLENDPDEGLVVLLRLTPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKLLEGSR-CPQCSVDTGGLGAAAIDLVRFVDI 502
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 181 bits (459), Expect = 9.830e-48 Identity = 109/296 (36.82%), Postives = 159/296 (53.72%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKG---VEQRGTSRMFGDAELTEPWHSH--SLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGR--VSESQ 852
WLA++L+P+LNHK + R GDA +T S S RL +G+LE RLA +WP ++EYVL L +GL FPL GD LVV LRL RP V + + + S W++ GVPPGAIE++++ CC LG + +WR+GVLVH + R + +YS+ E+ ++GD++ + W + V + V M + FPGLRW+ SL CP H + ++V GD+F+++R C C +G G A +L+ + DI G + V R V ESQ
Sbjct: 463 WLARILKPLLNHKDQRTFDGRVNLGDTGDARITLDDSSDIASWGRLKNEGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLEGDPDNGLVVLLRLEPNRPASVGEAIDTFCSKYTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQHGYEMPFATKVNCAGDKFLERR--CPRCSPQTRGLGAAAIDLIRMVDIRLDRGVIDREVKARFDVLESQ 756
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.240e-47 Identity = 100/275 (36.36%), Postives = 148/275 (53.82%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQRGTSRMFGDA-----ELTEPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
WLA++L+P+LNHK E GD L +P S RL ++G+LE +LA +WP ++EYVL L +GL FPL D LVV LRL RP V + + + S WK+ GVPPGA+E++++ CC LG + +WR+GVLVH ++ R + L+YS+ E+ ++GD++ AW + V + VR M + FPGLRW SL CP H ++ + +R GD+ ++ C C + G G A +L+ DI
Sbjct: 368 WLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDITSWDRLKKEGVLEPKLAYAMWPDGLSEYVLPTLASLGLTFPLENDPDEGLVVLLRLKPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGGVRTFWRYGVLVHGSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKLLEGSR-CPQCSVDTGGLGAAAIDLVRFVDI 641
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.220e-46 Identity = 106/289 (36.68%), Postives = 154/289 (53.29%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQ---RGTSRMFGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGR 837
WLA++L+P+LNHK E R GDA +T +P + S RL +G+LE RLA +WP ++EYVL L +GL FPL GD VV LRL RP V + + +LS W + GVPPGAIE++++ CC LG + +WR+GVLVH R + L+YS+ ++ ++GD+ W + V + V M + FPGLRW +L CP H ++ ++V + G+ F+ +R C C KG G A +LL + DI G+ V+ R
Sbjct: 483 WLARILKPLLNHKDQETFDGRVNLGDTGDARITLDDPLYIASWGRLKNEGVLEPRLAYAMWPGGLSEYVLPTLASLGLTFPLEGDLDEGQVVLLRLKPERPDSVGEVIDTFCSRHTPALSASWNIFLGVPPGAIEKVLTRCCGLGAVQTFWRYGVLVHGGLGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAMLMANKVTQAGETFLKRR--CPRCSTETKGLGAAAIDLLRMVDIRMDRGEIFDEVMER 769
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5KHN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN7_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.350e-46 Identity = 96/232 (41.38%), Postives = 132/232 (56.90%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQ-RGTSRMFGDAE----LTEPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHV---DHDHEES-----RLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDH 654
WLAK+L+P+LNHK E G ++ G + L +P S RL +G+LE RLA+ +W ++EYVL L +GLAFPL D G LVV LRL RP V + + + D +L+ WKM GVPPGAIE++++ CC LG V+WR GVLVH D D +E + L+YS+ E+ V+GD++ W ++ + VR M + FPGLR SL CP H
Sbjct: 84 WLAKILKPLLNHKDEETFEGLVKLGGTGDMCLTLEDPLDIISWFRLKREGVLEPRLARTMWSNGLSEYVLPTLTTLGLAFPLEADPAGGLVVLLRLTPGRPERVGKVMDTFYLDQTPALNASWKMFLGVPPGAIEKVLTRCCSLGGVTVFWRSGVLVHSALRDEDGDEDGSDIFAVVLEYSSSDNELTAQVFGDISTQAPWTVLSYAASAVRLMLMDFPGLRSRGSLKCPQH 315
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 175 bits (444), Expect = 3.160e-46 Identity = 103/275 (37.45%), Postives = 150/275 (54.55%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQ-RGTSRM--FGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
WLA++L+P+LNHK E G + GDA +T +P S RL +G+LE RLA +WP ++EYVL L +GL FPL D LVV LRL TRP V + + + S WK+ GVPPGAIE++++ CC LG + +WR+GVLVH ++ R + L+YS+ E+ ++G ++ AW + V + VR M + FPGLRW SL CP H + ++ + GD+ ++ C C G G A +L+ + DI
Sbjct: 195 WLARILKPLLNHKDQENFDGCVNLGDTGDARITLDDPLDIASWDRLKREGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLENDPAEGLVVLLRLKPTRPGSVGKVIETFCSGLTPAFSASWKIFLGVPPGAIEKVLTRCCGLGRVRTFWRYGVLVHGGLGVQDGRSTFAVVLEYSSAGNELTAQIFGGISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMPFVNMARSDGDKLLEGSR-CPHCSEDTGGLGEAAIDLVRLVDI 468
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.780e-45 Identity = 101/277 (36.46%), Postives = 153/277 (55.23%), Query Frame = 1
Query: 1 WLAKVLEPVLNHKGVEQR---GTSRM--FGDAELTEPWHSH--SLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
WL+++L+P+LNHK +QR G ++ GD +T S S RL +G+LE RLA +WP ++EYVL L +GL FPL GD LVV LRL RP V + + + S W++ GVPPGAIE++++ CC LG + +WR+GVLVH + R + ++YS+ E+ ++GD++ W + V + V M + FPGLRW L CP H + ++V R GD+F++++ C C +G G A +L+ + DI
Sbjct: 747 WLSRILKPLLNHK--DQRTFDGRVKLGDTGDTRITLHDQSDIDSWDRLKSEGVLEPRLANAMWPHGLSEYVLPTLVSVGLTFPLEGDPDAGLVVLLRLEPHRPESVGEVIDTFCSKHTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVVEYSSTDNELTAQIFGDISTPAPWVALSYVMSAVSLMLVDFPGLRWKGCLKCPQHGNEMPFANKVNRAGDKFLERK--CPRCSPETRGLGAAAIDLVCLVDI 1019 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17560.4171.1 >prot_H-paniculata_contig17560.4171.1 ID=prot_H-paniculata_contig17560.4171.1|Name=mRNA_H-paniculata_contig17560.4171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp WLAKVLEPVLNHKGVEQRGTSRMFGDAELTEPWHSHSLRRLIEDGILEQRback to top mRNA from alignment at H-paniculata_contig17560:950..2575- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17560.4171.1 ID=mRNA_H-paniculata_contig17560.4171.1|Name=mRNA_H-paniculata_contig17560.4171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig17560:950..2575- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17560:950..2575- >mRNA_H-paniculata_contig17560.4171.1 ID=mRNA_H-paniculata_contig17560.4171.1|Name=mRNA_H-paniculata_contig17560.4171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig17560:950..2575- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |