mRNA_H-paniculata_contig17560.4171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17560.4171.1
Unique NamemRNA_H-paniculata_contig17560.4171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.010e-51
Identity = 117/293 (39.93%), Postives = 162/293 (55.29%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQ--RGTSRMFGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDH----EESRLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGRVSESQ 852
            WLA++L+P+LNH+  E   RG   + GD  +T  E  H  S  RL   G+LE  LA+ LWP  ++ YVL  L  +GL +PL  D    LVV LRL E RP  V +EL     D    LSV WK+  GVPPGAIE++++ CC LGT + +WRFGVLV              L ++YS DK EV + V+G ++ A  WA +    +V + M  +FPGLRW A+L CP H Q++       R GD+ +     C+ C     G G  A  LLE+ D+++   +  Q V GR+ ++Q
Sbjct:  630 WLAQILKPLLNHRDDEDPLRGDVSL-GDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWPDGLSNYVLPALDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDHTAVLSVKWKVFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQGSLGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHEQDMQISKAATRPGDKSLFGAT-CSLCDSKTGGLGAAAMSLLEIVDVHECVDKIFQEVAGRLVQAQ 920          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.400e-50
Identity = 108/292 (36.99%), Postives = 159/292 (54.45%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQRGTSRMFGDAELTEPWHSH--SLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEES----RLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGRVSESQR 855
            WLAK+L+P+LNH+  E    S   GD  +T   H    S +R  + G+L+  LA  LWP  + +YVL  L+ +GLA  L     G LVV LRLG+ RP  V +EL     D +   SV WK+  GVPPGA+E++++ CC +G  + +WRFGVLV  +     +     + ++YS    E+ + V+G++     WA +    + VR M   FPGLRW ASL CP+H Q++   +   R GD+ + +   CT C     G G  A+ELL++ D+     +  + V GR  + QR
Sbjct:  733 WLAKILKPLLNHREDEDFFGSLSLGDTGITLDGHKDKVSWQRFKQTGVLKPELAGLLWPGDLCDYVLRTLESLGLAHQLDDRFAGGLVVLLRLGKERPASVGKELDDFRRDHEAIFSVTWKISMGVPPGAVEKVLTRCCSIGELRTFWRFGVLVQGNMGGVTAGKTFAMLVEYSHKGSEIDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEHKQDMPISNTATRPGDKLLLEHG-CTLCSSETGGVGAAATELLQMVDVLQNRDKMFREVHGRFVDLQR 1023          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 8.000e-50
Identity = 118/293 (40.27%), Postives = 159/293 (54.27%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQ--RGTSRMFGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDH----EESRLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGRVSESQ 852
            WLA++L+P+LNH+  E   RG   + GD  +T  E  H  S  RL   G+LE  LA  LWP  ++ YVL  L  +GL +PL  D    LVV LRL E RP  V +EL     D    LSV WK+  GVPPGAIE++++ CC LGT + +WRFGVLV          +   L ++YS D  EV + V+G +  A  WA +    +V + M  +FPGLRW ASL CP H Q++       RRGD+ +     C  C     G G  A +LLE+ DI    G  ++ V  R+ ++Q
Sbjct:  594 WLAQILKPLLNHRDDEDPLRGDVSL-GDTGITLKEDKHIASWNRLKGHGVLEPELAGVLWPDGLSNYVLPTLDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDHTAVLSVKWKIFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQGSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHEQDMQISRTATRRGDKLLHGAT-CNLCDSETGGLGAAAIDLLEMVDIRRSRGDLVRAVNRRLVKAQ 884          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 8.740e-49
Identity = 99/275 (36.00%), Postives = 149/275 (54.18%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQRGTSRMFGDA-----ELTEPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
            WLA++L+P+LNHK  E        GD       L +P    S  RL ++G+LE RLA  +WP  ++EYVL  L  +G  FPL  D    LVV LRL   RP  V + +         + S  WK+  GVPPGA+E++++ CC LG  + +WR+GVLVH     ++ R    + L+YS+   E+   ++GD++   AW  +  V + V+ M + FPGLRW  SL CP+H   ++ + + +R GD+ ++    C  C +   G G  A +L+   DI
Sbjct:  229 WLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDIKSWDRLKKEGVLEPRLAYAMWPDGLSEYVLPTLASLGFTFPLENDPDEGLVVLLRLTPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKLLEGSR-CPQCSVDTGGLGAAAIDLVRFVDI 502          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 9.830e-48
Identity = 109/296 (36.82%), Postives = 159/296 (53.72%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKG---VEQRGTSRMFGDAELTEPWHSH--SLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGR--VSESQ 852
            WLA++L+P+LNHK     + R      GDA +T    S   S  RL  +G+LE RLA  +WP  ++EYVL  L  +GL FPL GD    LVV LRL   RP  V + +         + S  W++  GVPPGAIE++++ CC LG  + +WR+GVLVH      + R    +  +YS+   E+   ++GD++ +  W  +  V + V  M + FPGLRW+ SL CP H   +   ++V   GD+F+++R  C  C    +G G  A +L+ + DI    G   + V  R  V ESQ
Sbjct:  463 WLARILKPLLNHKDQRTFDGRVNLGDTGDARITLDDSSDIASWGRLKNEGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLEGDPDNGLVVLLRLEPNRPASVGEAIDTFCSKYTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQHGYEMPFATKVNCAGDKFLERR--CPRCSPQTRGLGAAAIDLIRMVDIRLDRGVIDREVKARFDVLESQ 756          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.240e-47
Identity = 100/275 (36.36%), Postives = 148/275 (53.82%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQRGTSRMFGDA-----ELTEPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
            WLA++L+P+LNHK  E        GD       L +P    S  RL ++G+LE +LA  +WP  ++EYVL  L  +GL FPL  D    LVV LRL   RP  V + +         + S  WK+  GVPPGA+E++++ CC LG  + +WR+GVLVH     ++ R    + L+YS+   E+   ++GD++   AW  +  V + VR M + FPGLRW  SL CP H   ++ +   +R GD+ ++    C  C +   G G  A +L+   DI
Sbjct:  368 WLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDITSWDRLKKEGVLEPKLAYAMWPDGLSEYVLPTLASLGLTFPLENDPDEGLVVLLRLKPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGGVRTFWRYGVLVHGSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKLLEGSR-CPQCSVDTGGLGAAAIDLVRFVDI 641          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.220e-46
Identity = 106/289 (36.68%), Postives = 154/289 (53.29%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQ---RGTSRMFGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDIYDPTGQALQRVVGR 837
            WLA++L+P+LNHK  E    R      GDA +T  +P +  S  RL  +G+LE RLA  +WP  ++EYVL  L  +GL FPL GD     VV LRL   RP  V + +         +LS  W +  GVPPGAIE++++ CC LG  + +WR+GVLVH        R    + L+YS+   ++   ++GD+     W  +  V + V  M + FPGLRW  +L CP H   ++  ++V + G+ F+ +R  C  C    KG G  A +LL + DI    G+    V+ R
Sbjct:  483 WLARILKPLLNHKDQETFDGRVNLGDTGDARITLDDPLYIASWGRLKNEGVLEPRLAYAMWPGGLSEYVLPTLASLGLTFPLEGDLDEGQVVLLRLKPERPDSVGEVIDTFCSRHTPALSASWNIFLGVPPGAIEKVLTRCCGLGAVQTFWRYGVLVHGGLGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAMLMANKVTQAGETFLKRR--CPRCSTETKGLGAAAIDLLRMVDIRMDRGEIFDEVMER 769          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5KHN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN7_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.350e-46
Identity = 96/232 (41.38%), Postives = 132/232 (56.90%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQ-RGTSRMFGDAE----LTEPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHV---DHDHEES-----RLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDH 654
            WLAK+L+P+LNHK  E   G  ++ G  +    L +P    S  RL  +G+LE RLA+ +W   ++EYVL  L  +GLAFPL  D  G LVV LRL   RP  V + +   + D   +L+  WKM  GVPPGAIE++++ CC LG   V+WR GVLVH    D D +E       + L+YS+   E+   V+GD++    W ++    + VR M + FPGLR   SL CP H
Sbjct:   84 WLAKILKPLLNHKDEETFEGLVKLGGTGDMCLTLEDPLDIISWFRLKREGVLEPRLARTMWSNGLSEYVLPTLTTLGLAFPLEADPAGGLVVLLRLTPGRPERVGKVMDTFYLDQTPALNASWKMFLGVPPGAIEKVLTRCCSLGGVTVFWRSGVLVHSALRDEDGDEDGSDIFAVVLEYSSSDNELTAQVFGDISTQAPWTVLSYAASAVRLMLMDFPGLRSRGSLKCPQH 315          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.160e-46
Identity = 103/275 (37.45%), Postives = 150/275 (54.55%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQ-RGTSRM--FGDAELT--EPWHSHSLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
            WLA++L+P+LNHK  E   G   +   GDA +T  +P    S  RL  +G+LE RLA  +WP  ++EYVL  L  +GL FPL  D    LVV LRL  TRP  V + +         + S  WK+  GVPPGAIE++++ CC LG  + +WR+GVLVH     ++ R    + L+YS+   E+   ++G ++   AW  +  V + VR M + FPGLRW  SL CP H   +  ++  +  GD+ ++    C  C     G G  A +L+ + DI
Sbjct:  195 WLARILKPLLNHKDQENFDGCVNLGDTGDARITLDDPLDIASWDRLKREGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLENDPAEGLVVLLRLKPTRPGSVGKVIETFCSGLTPAFSASWKIFLGVPPGAIEKVLTRCCGLGRVRTFWRYGVLVHGGLGVQDGRSTFAVVLEYSSAGNELTAQIFGGISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMPFVNMARSDGDKLLEGSR-CPHCSEDTGGLGEAAIDLVRLVDI 468          
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.780e-45
Identity = 101/277 (36.46%), Postives = 153/277 (55.23%), Query Frame = 1
Query:    1 WLAKVLEPVLNHKGVEQR---GTSRM--FGDAELTEPWHSH--SLRRLIEDGILEQRLAQFLWPR-ITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVLVHVDHDHEESR----LRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGKGPGILASELLEVDDI 795
            WL+++L+P+LNHK  +QR   G  ++   GD  +T    S   S  RL  +G+LE RLA  +WP  ++EYVL  L  +GL FPL GD    LVV LRL   RP  V + +         + S  W++  GVPPGAIE++++ CC LG  + +WR+GVLVH      + R    + ++YS+   E+   ++GD++    W  +  V + V  M + FPGLRW   L CP H   +   ++V R GD+F++++  C  C    +G G  A +L+ + DI
Sbjct:  747 WLSRILKPLLNHK--DQRTFDGRVKLGDTGDTRITLHDQSDIDSWDRLKSEGVLEPRLANAMWPHGLSEYVLPTLVSVGLTFPLEGDPDAGLVVLLRLEPHRPESVGEVIDTFCSKHTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVVEYSSTDNELTAQIFGDISTPAPWVALSYVMSAVSLMLVDFPGLRWKGCLKCPQHGNEMPFANKVNRAGDKFLERK--CPRCSPETRGLGAAAIDLVCLVDI 1019          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17560.4171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FL98_ECTSI2.010e-5139.93LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JME6_9PHAE2.400e-5036.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL89_ECTSI8.000e-5040.27LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE8.740e-4936.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI9.830e-4836.82LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5K1K4_9PHAE2.240e-4736.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI1.220e-4636.68LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5KHN7_9PHAE1.350e-4641.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H4_9PHAE3.160e-4637.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF46_ECTSI2.780e-4536.46LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17560contigH-paniculata_contig17560:950..2575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue9.3e-47
Seed eggNOG ortholog2880.D7FL98
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size908
Cds size906
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17560.4171.1prot_H-paniculata_contig17560.4171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17560 952..2575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.9610522-CDS-H-paniculata_contig17560:951..10491622929376.9610522-CDS-H-paniculata_contig17560:951..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 952..1049 -
1691480837.0202217-CDS-H-paniculata_contig17560:951..10491691480837.0202217-CDS-H-paniculata_contig17560:951..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 952..1049 -
1622929376.9738393-CDS-H-paniculata_contig17560:1568..16951622929376.9738393-CDS-H-paniculata_contig17560:1568..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 1569..1695 -
1691480837.0382595-CDS-H-paniculata_contig17560:1568..16951691480837.0382595-CDS-H-paniculata_contig17560:1568..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 1569..1695 -
1622929376.9897037-CDS-H-paniculata_contig17560:1894..25751622929376.9897037-CDS-H-paniculata_contig17560:1894..2575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 1895..2575 -
1691480837.0464718-CDS-H-paniculata_contig17560:1894..25751691480837.0464718-CDS-H-paniculata_contig17560:1894..2575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 1895..2575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17560.4171.1

>prot_H-paniculata_contig17560.4171.1 ID=prot_H-paniculata_contig17560.4171.1|Name=mRNA_H-paniculata_contig17560.4171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp
WLAKVLEPVLNHKGVEQRGTSRMFGDAELTEPWHSHSLRRLIEDGILEQR
LAQFLWPRITEYVLAVLKEIGLAFPLPGDEVGTLVVPLRLGETRPLGVDQ
ELAMLFPDDQISLSVIWKMHDGVPPGAIERIMSHCCYLGTAKVYWRFGVL
VHVDHDHEESRLRLDYSTDKKEVVVAVWGDLTKAVAWAIICCVCTVVRKM
TLQFPGLRWDASLGCPDHPQNVMGISEVQRRGDRFIDKRNICTTCRIAGK
GPGILASELLEVDDIYDPTGQALQRVVGRVSESQRARLNSCGNASSSDSQ
VA
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mRNA from alignment at H-paniculata_contig17560:950..2575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17560.4171.1 ID=mRNA_H-paniculata_contig17560.4171.1|Name=mRNA_H-paniculata_contig17560.4171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig17560:950..2575- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTGGCGAAGGTGCTCGAGCCGGTGCTGAATCACAAGGGTGTTGAGCA GAGGGGTACGTCGCGTATGTTCGGAGATGCGGAGCTGACGGAGCCGTGGC ATAGTCACTCCCTACGGAGGCTAATAGAGGATGGCATCCTGGAGCAGCGA CTCGCTCAGTTTTTGTGGCCGCGCATCACGGAATATGTGCTGGCTGTACT GAAGGAAATCGGTCTGGCCTTCCCATTGCCTGGCGACGAAGTCGGCACCC TCGTTGTTCCTCTGCGTCTTGGAGAGACCCGACCGCTTGGTGTTGACCAA GAACTGGCGATGCTGTTCCCCGACGATCAGATATCTCTCTCAGTGATCTG GAAAATGCACGACGGCGTTCCTCCCGGAGCCATCGAGAGGATCATGTCTC ATTGCTGCTATCTTGGGACGGCCAAGGTTTACTGGAGGTTCGGTGTTCTT GTCCATGTAGACCACGATCACGAGGAATCGCGTCTAAGGCTTGATTACAG CACGGATAAGAAGGAGGTGGTGGTGGCGGTTTGGGGAGATCTTACCAAGG CCGTTGCGTGGGCCATCATCTGCTGTGTGTGTACAGTCGTCCGGAAGATG ACCCTGCAATTTCCAGGACTGCGCTGGGATGCGTCCTTGGGCTGCCCAGA TCACCCCCAAAACGTCATGGGCATCTCTGAGGTGCGGGTTATTGTTTCCA CGGGTCGACATGGTGTGTACTATTTGGACGGTCACTCTTGCTGCCACAAC AAGTAACGAGATTTTTCGTAGTGTTCTTCCTTATTCAATAACCGTAAACA GCGACCATGGGTTTTTTCCCATAACTGCATTTTTTTAGTCTCCTATGGTT GGTAATTGCTGGTGCTCCCTTCACGCGCAGGTCCAGAGAAGGGGTGATCG CTTTATAGACAAGAGAAACATCTGTACAACTTGCCGCATAGCGGGCAAGG GACCTGGCATTCTTGCATCAGAGCTGCTTGAGGTGGACGACATCTACGAC CCTACAGGTTAACATCCTCATAGGCAAACATCTGTTCCAGCCAAAATGAC AACAATTTCTTGTTAATTGAGTGGAACTATAGCCAGCATAACAGCGTTGA CTTGGTTTTCATGTTGCTGACTCGTCCTTTATAAAATCACGTAGGACTAG CTGGATAGTGTTCCGATTGGAGAATTTTGGAACTGGTGGATGATCCATGC TCTAGCCTACGACAGTACGTGTTTCGCTGCCGGATGTGGGCAGGGAGTGG TTGCATGACATACACACTGCACATTCGCCGACTGTTAGCCCTGTCAGCTG CCCTCTGATGAGCAGCATGAAGGCGCAAGCTAGATATACTGTAGAACATT TCTTTTCGCCGGGGGTGTCGTTTATTTACCCGATCGATGAAACTCGTCTC AATGTAATACCAGCGAATGGTTGCTACGTCAGTTGTAAACCACCCTCTTT CACACTACTTCGGCGTCCTTGCCTTTCAGTCAACGCGGACACATGTCACG GATGTCCTCCATTTTCGCGCGTCCAGGTCAAGCACTTCAGCGAGTGGTGG GCCGTGTCTCCGAGTCTCAGAGAGCCAGGCTCAACAGCTGCGGGAATGCC AGCAGCTCAGATTCTCAAGTGGCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17560:950..2575-

>mRNA_H-paniculata_contig17560.4171.1 ID=mRNA_H-paniculata_contig17560.4171.1|Name=mRNA_H-paniculata_contig17560.4171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig17560:950..2575- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTGGCGAAGGTGCTCGAGCCGGTGCTGAATCACAAGGGTGTTGAGCA
GAGGGGTACGTCGCGTATGTTCGGAGATGCGGAGCTGACGGAGCCGTGGC
ATAGTCACTCCCTACGGAGGCTAATAGAGGATGGCATCCTGGAGCAGCGA
CTCGCTCAGTTTTTGTGGCCGCGCATCACGGAATATGTGCTGGCTGTACT
GAAGGAAATCGGTCTGGCCTTCCCATTGCCTGGCGACGAAGTCGGCACCC
TCGTTGTTCCTCTGCGTCTTGGAGAGACCCGACCGCTTGGTGTTGACCAA
GAACTGGCGATGCTGTTCCCCGACGATCAGATATCTCTCTCAGTGATCTG
GAAAATGCACGACGGCGTTCCTCCCGGAGCCATCGAGAGGATCATGTCTC
ATTGCTGCTATCTTGGGACGGCCAAGGTTTACTGGAGGTTCGGTGTTCTT
GTCCATGTAGACCACGATCACGAGGAATCGCGTCTAAGGCTTGATTACAG
CACGGATAAGAAGGAGGTGGTGGTGGCGGTTTGGGGAGATCTTACCAAGG
CCGTTGCGTGGGCCATCATCTGCTGTGTGTGTACAGTCGTCCGGAAGATG
ACCCTGCAATTTCCAGGACTGCGCTGGGATGCGTCCTTGGGCTGCCCAGA
TCACCCCCAAAACGTCATGGGCATCTCTGAGTGGTTGGCGAAGGTGCTCG
AGCCGGTGCTGAATCACAAGGGTGTTGAGCAGAGGGGTACGTCGCGTATG
TTCGGAGATGCGGAGCTGACGGAGCCGTGGCATAGTCACTCCCTACGGAG
GCTAATAGAGGATGGCATCCTGGAGCAGCGACTCGCTCAGTTTTTGTGGC
CGCGCATCACGGAATATGTGCTGGCTGTACTGAAGGAAATCGGTCTGGCC
TTCCCATTGCCTGGCGACGAAGTCGGCACCCTCGTTGTTCCTCTGCGTCT
TGGAGAGACCCGACCGCTTGGTGTTGACCAAGAACTGGCGATGCTGTTCC
CCGACGATCAGATATCTCTCTCAGTGATCTGGAAAATGCACGACGGCGTT
CCTCCCGGAGCCATCGAGAGGATCATGTCTCATTGCTGCTATCTTGGGAC
GGCCAAGGTTTACTGGAGGTTCGGTGTTCTTGTCCATGTAGACCACGATC
ACGAGGAATCGCGTCTAAGGCTTGATTACAGCACGGATAAGAAGGAGGTG
GTGGTGGCGGTTTGGGGAGATCTTACCAAGGCCGTTGCGTGGGCCATCAT
CTGCTGTGTGTGTACAGTCGTCCGGAAGATGACCCTGCAATTTCCAGGAC
TGCGCTGGGATGCGTCCTTGGGCTGCCCAGATCACCCCCAAAACGTCATG
GGCATCTCTGAGGTCCAGAGAAGGGGTGATCGCTTTATAGACAAGAGAAA
CATCTGTACAACTTGCCGCATAGCGGGCAAGGGACCTGGCATTCTTGCAT
CAGAGCTGCTTGAGGTGGACGACATCTACGACCCTACAGGTCCAGAGAAG
GGGTGATCGCTTTATAGACAAGAGAAACATCTGTACAACTTGCCGCATAG
CGGGCAAGGGACCTGGCATTCTTGCATCAGAGCTGCTTGAGGTGGACGAC
ATCTACGACCCTACAGGTCAAGCACTTCAGCGAGTGGTGGGCCGTGTCTC
CGAGTCTCAGAGAGCCAGGCTCAACAGCTGCGGGAATGCCAGCAGCTCAG
ATTCTCAAGTGGCGGTCAAGCACTTCAGCGAGTGGTGGGCCGTGTCTCCG
AGTCTCAGAGAGCCAGGCTCAACAGCTGCGGGAATGCCAGCAGCTCAGAT
TCTCAAGTGGCG
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