mRNA_H-paniculata_contig1755.4163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1755.4163.1 vs. uniprot
Match: A0A6H5K7Y3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y3_9PHAE) HSP 1 Score: 300 bits (767), Expect = 7.140e-79 Identity = 449/1523 (29.48%), Postives = 606/1523 (39.79%), Query Frame = 3
Query: 273 SVRGALKR--PVRATSCRNNEEILWAPALLCLCLDDSPGVRAEALKAARRALRC--LQGQPGISAWVLGRLDDGSLYTGLDRILYHHREVLPASSATGDSSRLTATSTAMPSXXXXXXXXXXXGGNKEMGTVGARTPMEGPSSARVKHAVLAWAVHLSLTDADTLMDNRYSP--HNTFDRAMTKLLKLTNRFKDPRPSVRMVTVDAWELFVSTCLANVSPHKAAKVSELVLKPFANRLPGERDPAVREALLSSLQRCVGSFPSQLLRYLWTFSKKSQRLREEGKGKNGGLADLLTRMSAGAGGGEDARHCAAFILAALLPCSQSQSAE-HPSLRHAELYVSLEVSKVLPILHTLMLAFPAPSSEISASSIGALATTLSDDGISAR------CFVPVALLAGLPTSGLILRAWCGLALWAITTVRGGDAHVAEGFPIG--GDSEPTTPVDVQVSGSAAPPSARAAAGDQSGKENGSGDIQGGEEYP--------SGPLRAILGSVLQGVLPAGGAGHGAGDSPTTTNSNSGAAETSGV-TAAETLAARRRKERMAEWNSALFPSLVRVLSMASANGINRTEEGHHSRQNVGTRAEPHNWLHTSVSLLEPPITPPRFSIAQPSHLSAEESQVTVSFNANDRSGG-HACSKCRSVQDVVGVLLRERGVGGSGRGSGDVSKSGTGKAKGSRKHAESNPQENLPLWIWLLVRGLRDPCD------------------------CH---PASSTSIATVAAQRKNDA-----------SLLCEILDLSPKGGLGQVLAALSQGAAALTGNGVRSDGSHSPIAETTVRVIREKKQQQREEMSVARIRDSCIHTLAEIWGAEASRNLCAWGTFREHFPLRDVTGGNGLLAVEFDISTKRSKHGG---QGSTNALH---------------------------QPNALLVGETDDSLRAPLKLAL-LLSHLPEMPSATVTAGEPGSATGSFAHWKSRERSVDDEPMIDEEPAVQSNFDQDSLVNSLPAAGGKPWGSLGSLG--AVFGPEAASLWSKLFAARQGHSA---GFAKGLLRRLSKDCASLAFSAPQASSVPSYIPVGAXXXXXXXXASDVENRNGQLRCDVQPDPLSSGGWGLAFSQTQ----------LTQTGAQ--------------GAAAADREGNSRNASQTPGSAQKGSIPKGLRSELGPSPPSSAMPLLATVTLSLLRASTHETGV-TRIRAWGAGLSSLAWLLASPVSVQSEPRPLPPPPSSPKVALPERCAEGSTEHFASSGGRRGNVAGSPAVATGTVCATELGDCLDAVHR--SVASWSPFGRQLGKGVDVDGGGG--GVPFDKESLAPLCRFLASGVGR-WSIAGVGAVS----DAGRVSCEAACL---FSVSP-------------LRHKTRAVTLSLLSAVKGLAKEALASSDVLGALSPLLIAILDLPRSR-EADRLQSSLLDTWNSTFGILPVTL--TASLKVAFPAQLLANLAAMSGRAEVKMPPGIVL 4385
SV GA+ R P RA E+ W LL LC DD+ VRA+ALKAA RA+ L+G GI+AWV+ L DG L G++R+L++ +S+ ++ A A P G+ +T + RVKHA+ WAVHLSL D +L+ R + D L + D R V++ V++WE+F + +A + +A KV+ + L+ + + E+ VRE +SSL R V SFPS L+ LWT + K + K+ GL ++L R AG GE ARH +A +LAALLPC + AE HP LR A L + E+ +L +L TLM AFP+P E +AS++ A A S+R C V L LPT+GLI AWCGLA WA+ V EG G G ++ GS AAA KE GSG P S PL+ +L L GV G A + T + G + G AA A+ +R+A W AL +L+R LS N E G + + WL V + S V F+ +G AC++C V+ + SRK +S PLW+ LL LR C CH P + AT + ++ S L L LSP G Q+LA+L GA + G Q EE D + +W AEA+RNL W PL G FD + GG +G A H QP+ L +T ++LR L A L SH PE + + + EP ATG +SR + E A ++ D + A+GG G S+ + FG EAA LW LF AR+ A GF+K L++ LSKDC + AF A S+ P+G + G+ P P G WGL FSQTQ +TG + AAA R N G Q G L P P A+P+LA L+LL A+ E R RAW AG ++LAW L + + A P + + + AG A G E+ CL AVH VA+ ++ G G P D +SLAP+CR LA V +S A DAG S + + FS S +R + R + LSA + +A AS +L ALSPLL A+LD+P S +AD LQSSLLD WN+TFG L + + K AF LL L+ +S RAEV+MPPGI L
Sbjct: 104 SVPGAMARCDPGRADR-PEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLRGNAGIAAWVVEALRDGRLSQGMNRVLFYD------ASSQSQAATTAAAGGADP--------LPHASGSSSPAAASDKTNPRQATPQRVKHAIRVWAVHLSLADPASLLRARDTAGKKRLLDVGTGLFTWLCGKSADGRDDVKVQAVESWEMFAVSMMAQIGRDEAKKVAHMFLRALSRWVLKEKG-VVREVAMSSLMRVVASFPSISLKPLWTTTWKGDK-------KSKGLGEVL-RDVAGGSSGEIARHHSARVLAALLPCFCLRPAEPHPLLRDAGLNLDEELPLLLSMLETLMEAFPSPIPEDAASAVDAAAPXXXPXSXSSRGAEEENCCADVRLEV-LPTTGLIANAWCGLAFWAMEQAAAAGLDV-EGTGKGKSGAADAGEFASDNQDGSGKGHGNTAAAASDCRKE-GSGPSSSSAAPPQENEASETSQPLQVLL-EWLLGVRARPSTGTSAKVTTVTEKAVPGGSTAEGRGKAAANSASSPTTDRLARWKEALLAALIRGLSRRLDVQDNEAEAG---ADDANAKLPGRAWLDAPV----------------------DSSSV---FDGRLCAGDCPACAECLPAGGVIRQSI-------------------------SRKWLKSE----TPLWLVLLTGVLRGRCGLEYRCLDGGXXXXXXXXSRVVREACHKGNPRHESGSATDGTRGGGESACQFSPVFLPQSFLAGALSLSPGGWPAQLLASLLTGARSAKGR------------------------TQEEE-------DLALVVAGRVWRAEAARNLAEWNRC---LPL-STDSYVGAAGAGFDGGVQGVTPGGDRYKGGPVAPHARTVGTSAAGVDVQKXXXXXXXXXXXXQPSKNLRTDTANTLRFSLHAACSLFSHPPEGNTRSQSK-EPKGATGQACDLESRAAGSTG---VQNEGAAIADHDGNLRGG---ASGGWSEGGKRSVAVESFFGAEAARLWLGLFEARRNSPAQPKGFSK-LVKALSKDCGNCAFVA-------SWGPLGGG-----------KGGAGEGGSSAVPPP---GAWGLDFSQTQPPXXXXXXXXXPRTGQRESGDFASSMQGDKTAGAAAMRYDKRSNTDHPEGKKQNGG-----GDALAPPXPFVALPVLAAAALALLTAAPAEADAKARGRAWKAGSATLAWTLTAAAAAPGT------------TAWPPPASXXXXQWS--------SAAGLAAGEEGATVPAEVCQCLCAVHSCLKVAAXXXXXXXXXXXLNRSSSSGTAGFPLDGDSLAPVCRLLAVAVRTSYSTAXXXXXXXXXXDAGPESSSGSLVRASFSSSTASGTEVVVAADPAVRLEIRGLVACALSASRKVA----ASPGLLTALSPLLEAVLDVPSSSCDADSLQSSLLDVWNATFGKLNLKQPPAPAWKAAFSPALLRRLSDLSRRAEVEMPPGITL 1448
BLAST of mRNA_H-paniculata_contig1755.4163.1 vs. uniprot
Match: D8LJ95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ95_ECTSI) HSP 1 Score: 241 bits (615), Expect = 1.500e-60 Identity = 425/1453 (29.25%), Postives = 559/1453 (38.47%), Query Frame = 3
Query: 1005 LSSLQRCVGSFPSQLLRYLWTFSKKSQRLREEGKGKNGGLADLLTRMSAGAGGGEDARHCAAFILAALLPCSQSQSAE-HPSLRHAELYVSLEVSKVLPILHTLMLAFPAPSSEISASSIGALATTLSDDGISAR-------CFVPVALLAGLPTSGLILRAWCGLALWAITTVRGGDAHV-AEGFPIGGDSEPTTPVDVQVSGSAAPPSARAAAGDQSGKENGSGDIQGGEEYPSG--------PLRAILGSVLQGVLPAGGAGHGAGDSPTTTNSNSGAAETSGV-TAAETLAARRRKERMAEWNSALFPSLVRVLSMASANGINRTEEGHHSRQNVGTRAEPHNWLHTSVSLLEPPITPPRFSIAQPSHLSAEESQVTVSFNANDRSGG-HACSKCRSVQDVVGVLLRERGVGGSGRGSGDVSKSGTGKAKGSRKHAESNPQENLPLWIWLLVRGLRDPCD------------------------CH---PASSTSIATVAAQRKNDA-----------SLLCEILDLSPKGGLGQVLAALSQGAAALTGNGVRSDGSHSPIAETTVRVIREKKQQQREEMSVARIRDSCIHTLAEIWGAEASRNLCAWGTFREHFPLRDVTGGNGLLAVEFDISTKRSKHGG---QGSTNALH--------------------QPNALLVGETDDSLRAPLKLALLLSHLPEMPSATVTAGEPGSATGSFAHWKSRERSVDDEPMIDEEPAVQSNFDQDSLVNSLPAAGGKPWGSLGS-LGAVFGPEAASLWSKLFAARQGHSA---GFAKGLLRRLSKDCASLAFSAPQASSVPSYIPVGAXXXXXXXXASDVENRNGQLRCDVQPDPLSSGGWGLAFSQTQ----------------------LTQTGAQGAAAADREGNSRNASQTPGSAQKGSIPKGLRSELGPSPPSSAMPLLATVTLSLLRASTHETGV-TRIRAWGAGLSSLAWLLASPVSVQSEPRPLPPPPSSPKVALPERCAEGSTEHFASSGGRRGNVAGSPAVATGTVCATELGDCLDAVHRSVA-SWSPFGRQLGKGVDVDGGGG--GVPFDKESLAPLCRFLASGVGRWSIAGVGAVSDAGRVSCEAACLFSVSPLRHKTRAVTLSLLSA-------VKGLAKEAL-------ASSDVLGALSPLLIAILDLPRSR-EADRLQSSLLDTWNSTFGILPVTL--TASLKVAFPAQLLANLAAMSGRAEVKMPPGIVLQNXXXXXXXXXXTSPLVTEQTA-GNARKGSDNEEVRVDGEQEAMNE--DILDAQSLLGDNLLGGQTAVRSSGSGSR---SPG--FGAGVAGMLSAACARRSFIPASQSSPANS-----ALPKAKRSPSPSSPSGRPGGSKFVRVLGSGRGNAANRPGNANVRKRAAITTHTSLDGSQ--VDWSDDSQLPDTEPDSGKNL 4937
+SSL R V SFPS L+ LWT + K + K+ GL ++L R AG GE A H +A ILAALLPC AE HP LR A L + E+ +L IL TLM AFP+P E +AS++ A A C V L LPTSGLI AWCGLA WA+ V G G AAA KE GSG P PL+ +L L GV G GA + T + G + G AA A+ +R+A W AL +L+R LS TE G + + WL V + S V F+ +G AC++C V+ + SRK +S PLW+ LL LR C CH P +AT + + S L L LSP G Q+LA+L LTG +R K + +EE +A + +W AEA+RNL W PL G FD + GG +G A H QP+ L T ++LR L A L P + + E A G +R +V + +E + D + + G G + + +VFG E A LW LF AR+ A GF+K L++ L+KDC + AF V S P+G XXXX WGL FSQTQ TQ AAA R N G Q G L P PP A+P+LA L+LL A+ E + RAW AG ++LAW L + VAG A G E+ CL AV + + + G G + G G P D++SLAP+CR LA V R S A G + A E + + + AV + +++A ++GL AL AS +L ALSPLL A+LD+ S +AD LQSSLLD WN+TFG + + + K AF LL L+ +S RAEV+MP GI L T+ + KG++ + V+ +E D +S +G A + G G+R S G + GVAG L A RRSF+ + SP+ S A PK KRSPSP+SP G KF+RV+G+GRG+ NR ++RAA+TTHTSLDGSQ W D SQLPDT PDSG +L
Sbjct: 1 MSSLMRVVASFPSTSLKPLWTTTWKGDK-------KSKGLGEVL-RDVAGGSSGEIAWHHSARILAALLPCFCLPPAEPHPLLRDAGLNLGEELPLLLSILETLMEAFPSPIPEDAASAVDAAAPXXXXXXXXXXXXXXXXXCCADVRLEV-LPTSGLIANAWCGLAFWAMEQAAAAGLDVQGTGKGXSGPXXXXXXXXXXXXXXXXXXXNTAAAARDCRKE-GSGPSSSSAAPPKENEASEAGRPLQVLL-EWLLGVRARPSTGTGAKVTTVTEKAVPGGSTAEGRGKAAANPASSPTTDRLARWKVALLAALIRGLSRRLDVQNAETEAG---ADDADAKLPERAWLDAPV----------------------DSSSV---FDGWSCAGDCPACAECLPAGGVIRQSI-------------------------SRKWLKSE----TPLWLVLLTGVLRGRCGLEYRCLDGSGGGGSGGESRVVREACHKGNPRHEPGVATDGTRGGGGSACQFSPVFLSQSFLGGALSLSPGGWPAQLLASL------LTG-------------------VRSAKGRTQEEEDLALV------VAGRVWRAEAARNLAEWNRC---LPL-STDSYVGAAGAGFDGGAQGVTLGGDRYRGGPVAPHARTVGISVSGADVQQKQQQRQPSENLRTATANTLRFLLHAACSLFSRPPERNTRSQSKESEGAAGQACDPGNR--TVVSTGVQNEAREAVGVAEHDGNLRGEDSRGWSQGGKRSAAVESVFGAETARLWLGLFEARRNSPAQPKGFSK-LVKALAKDCGNCAF-------VVSGGPLGGXXXX--------------XXXXXXXXXXXXAVWGLDFSQTQPPSQXXXXQPRTGQREPGDFASSTQGDKTAGAAATRYDKCSNTDHPEGKKQNGG-----GDTLAPPPPFVALPVLAAAALALLTAAPAEADAKAKGRAWKAGSATLAWTLTAAXXXX--------------XXXXXXXXXXXXXXXXXXXXXXXXVAGVAAGEEGATIPAEVCQCLGAVRSCLTVAVAAAADSAGGGPNRSSSSGTAGFPLDRDSLAPVCRLLAVAV-RTSYATAGGAAAAADAGPEPSPGSLIQAAPSSSTAVGIEVVAADPAVRPEIRGLVACALSASRKVAASPGLLTALSPLLEAVLDVSSSSCDADSLQSSLLDVWNATFGKINLKQPPAPAWKAAFSPSLLRRLSDLSQRAEVEMPRGITLPVLDTVAAPPTATTAQGLRGSGLSEGNKGAEGGGIAVEESARGGSEARDYSQPESAA----VGDLRAAAAGGGGARGRASSGCAWNGGVAGALPAKGGRRSFMKQASRSPSPSQSHPVATPK-KRSPSPTSPDGGGFSGKFIRVVGNGRGSGGNR---GTPKRRAAVTTHTSLDGSQSIAPWEDGSQLPDTNPDSGPDL 1298
BLAST of mRNA_H-paniculata_contig1755.4163.1 vs. uniprot
Match: D8LJ94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ94_ECTSI) HSP 1 Score: 102 bits (253), Expect = 5.850e-19 Identity = 75/232 (32.33%), Postives = 109/232 (46.98%), Query Frame = 3
Query: 273 SVRGALKR--PVRATSCRNNEEILWAPALLCLCLDDSPGVRAEALKAARRALRC--LQGQPGISAWVLGRLDDGSLYTGLDRILYHHREVLPASSATGDSSRLTATSTAMPSXXXXXXXXXXXGGNKEMGTVGARTPMEGPSSARVKHAVLAWAVHLSLTDADTLMDNRYSP--HNTFDRAMTKLLKLTNRFKDPRPSVRMVTVDAWELFVSTCLANVSPHKAAKVSELVLK 950
SV GA+ R P RA E+ W LL LC DD+ VRA+ALKAA RA+ L+G GI+AWVL L DG L G+ R+L++ ++ G + A+ G+ RT + RVKHA+ WAVHLSL D L+ + S D L+ + D R V++ V++WE+F + +A + +A KV+ + L+
Sbjct: 172 SVPGAMARCDPGRADR-PEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLRGNAGIAAWVLEALRDGRLSQGMSRVLFYDASSQSQATVPGAAGEADPLPHAL--------------GSSSTAAAPDRTNPRQATPQRVKHAIRVWAVHLSLADPTRLLRAKDSAGKKRLLDVGTGLFTWLSGKSADGRDDVKVQAVESWEMFAVSMMAQIGREEAKKVAHMFLR 388 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1755.4163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1755.4163.1 >prot_H-paniculata_contig1755.4163.1 ID=prot_H-paniculata_contig1755.4163.1|Name=mRNA_H-paniculata_contig1755.4163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1638bp MVDGGASSSRWIFFSSVNHDCCPLRDIAPDHGTITHGGAGSCASACGCKGback to top mRNA from alignment at H-paniculata_contig1755:10645..23703+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1755.4163.1 ID=mRNA_H-paniculata_contig1755.4163.1|Name=mRNA_H-paniculata_contig1755.4163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13059bp|location=Sequence derived from alignment at H-paniculata_contig1755:10645..23703+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1755:10645..23703+ >mRNA_H-paniculata_contig1755.4163.1 ID=mRNA_H-paniculata_contig1755.4163.1|Name=mRNA_H-paniculata_contig1755.4163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9828bp|location=Sequence derived from alignment at H-paniculata_contig1755:10645..23703+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |