mRNA_H-paniculata_contig17525.4153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17525.4153.1
Unique NamemRNA_H-paniculata_contig17525.4153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17525.4153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17525contigH-paniculata_contig17525:4051..4505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17525.4153.1prot_H-paniculata_contig17525.4153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17525 4074..4445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.3561141-UTR-H-paniculata_contig17525:4050..40731622929375.3561141-UTR-H-paniculata_contig17525:4050..4073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17525 4051..4073 +
1691480836.3137846-UTR-H-paniculata_contig17525:4050..40731691480836.3137846-UTR-H-paniculata_contig17525:4050..4073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17525 4051..4073 +
1622929375.388618-UTR-H-paniculata_contig17525:4445..45051622929375.388618-UTR-H-paniculata_contig17525:4445..4505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17525 4446..4505 +
1691480836.3404953-UTR-H-paniculata_contig17525:4445..45051691480836.3404953-UTR-H-paniculata_contig17525:4445..4505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17525 4446..4505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.3732321-CDS-H-paniculata_contig17525:4073..44451622929375.3732321-CDS-H-paniculata_contig17525:4073..4445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17525 4074..4445 +
1691480836.3281364-CDS-H-paniculata_contig17525:4073..44451691480836.3281364-CDS-H-paniculata_contig17525:4073..4445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17525 4074..4445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17525.4153.1

>prot_H-paniculata_contig17525.4153.1 ID=prot_H-paniculata_contig17525.4153.1|Name=mRNA_H-paniculata_contig17525.4153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
METCRAPHTTRSRRRGDVNHRPVAKHRMRQVARRRRSNPSRGKGVSSTSL
LPTFATGGKETSAKRHRRLVLERCSRLESYRRSPSPHQHRVQQPCTHPNL
RVTPMVSEQLGTIEASHQGSTGM*
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mRNA from alignment at H-paniculata_contig17525:4051..4505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17525.4153.1 ID=mRNA_H-paniculata_contig17525.4153.1|Name=mRNA_H-paniculata_contig17525.4153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at H-paniculata_contig17525:4051..4505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATGGAATGCTGCTCGCGTAGATGGAAACCTGCCGTGCACCGCACACG
ACAAGGAGCCGCCGCCGGGGTGATGTCAATCACCGGCCAGTTGCCAAGCA
TCGCATGCGACAAGTAGCCCGCCGACGCCGAAGTAATCCCAGCCGTGGGA
AAGGTGTATCATCTACCTCTCTCCTCCCCACCTTTGCAACGGGTGGGAAG
GAAACCTCGGCAAAGCGGCATCGTCGGCTTGTTCTCGAGCGTTGCAGCAG
ACTCGAGTCTTATCGTAGGTCACCGTCACCGCATCAACATCGCGTTCAAC
AACCATGTACACATCCCAATCTCAGGGTTACACCTATGGTAAGCGAACAG
TTGGGGACAATAGAAGCCTCGCACCAAGGCTCGACGGGGATGTAAAAGGC
AGAGGGAATTCAAAGGATGGATCAGTATCTGCGTCATTCTTGAAACATGT
AAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig17525:4051..4505+

>mRNA_H-paniculata_contig17525.4153.1 ID=mRNA_H-paniculata_contig17525.4153.1|Name=mRNA_H-paniculata_contig17525.4153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig17525:4051..4505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAACCTGCCGTGCACCGCACACGACAAGGAGCCGCCGCCGGGGTGA
TGTCAATCACCGGCCAGTTGCCAAGCATCGCATGCGACAAGTAGCCCGCC
GACGCCGAAGTAATCCCAGCCGTGGGAAAGGTGTATCATCTACCTCTCTC
CTCCCCACCTTTGCAACGGGTGGGAAGGAAACCTCGGCAAAGCGGCATCG
TCGGCTTGTTCTCGAGCGTTGCAGCAGACTCGAGTCTTATCGTAGGTCAC
CGTCACCGCATCAACATCGCGTTCAACAACCATGTACACATCCCAATCTC
AGGGTTACACCTATGGTAAGCGAACAGTTGGGGACAATAGAAGCCTCGCA
CCAAGGCTCGACGGGGATGTAAATGGAAACCTGCCGTGCACCGCACACGA
CAAGGAGCCGCCGCCGGGGTGATGTCAATCACCGGCCAGTTGCCAAGCAT
CGCATGCGACAAGTAGCCCGCCGACGCCGAAGTAATCCCAGCCGTGGGAA
AGGTGTATCATCTACCTCTCTCCTCCCCACCTTTGCAACGGGTGGGAAGG
AAACCTCGGCAAAGCGGCATCGTCGGCTTGTTCTCGAGCGTTGCAGCAGA
CTCGAGTCTTATCGTAGGTCACCGTCACCGCATCAACATCGCGTTCAACA
ACCATGTACACATCCCAATCTCAGGGTTACACCTATGGTAAGCGAACAGT
TGGGGACAATAGAAGCCTCGCACCAAGGCTCGACGGGGATGTAA
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