mRNA_H-paniculata_contig17441.4126.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17441.4126.1
Unique NamemRNA_H-paniculata_contig17441.4126.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: A0A6H5KY80_9PHAE (UBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY80_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.480e-68
Identity = 109/146 (74.66%), Postives = 130/146 (89.04%), Query Frame = 2 
Query:    2 SMGPLVATSISLYRLRVLEPLLGSRKFGALATITGVMSLPFEATAAVYFNTVRLTPGPLPVVFALLVMYYAVVPPLKRRLFGVLGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTLSIQSIRLPNFVYRCCSKL 439
            SMGPL+A+S+SLYRLR LEPLLGS+KFGA A +T  ++LPFEATA VYF TVRLTPGP+P+VFAL+V+YYA+VPP K R FGVLG+DFSDKAFTF VAGMLA CEGW+S+VPAVCGALVGG+YL DT+SIQ++R PN V+RC S+L
Sbjct:   63 SMGPLLASSLSLYRLRALEPLLGSKKFGAFAAVTSALALPFEATAGVYFGTVRLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFVVAGMLASCEGWDSIVPAVCGALVGGLYLTDTMSIQAVRFPNVVHRCFSRL 208
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: A0A068S933_9FUNG (CUE domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S933_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 6.470e-11
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 2 
Query:    8 GPLVATSISLYRLRVLEPLLGSRKFGALATITGVMSLPFEATAAVYFNTV---RLTPGPLPVVFALLVMYYAVVPPLKRRLFGVLGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTLSIQSIRLPNFVYRCCSKL 439
            G L    + LY +RV+E   GS K+ A   +T +++   E  A V    +   ++  GP  ++F+ L  Y+ ++P   R  F + G+ F+DK F F  A  +   + ++++VPAVCG LVG +Y  D  +I+  R P F+    S+L
Sbjct:   66 GELFFGLLLLYSMRVIERQFGSAKYAAFMFVTLLIATFLEIGALVSGARLGFRKIPGGPYAIIFSALYQYHRMIPVTYR--FRIFGVTFNDKTFVFVPAIQMMLSQYFSTLVPAVCGLLVGALYRSDVGNIKQWRFPLFIRSWTSRL 210
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: A0A8H7VUF7_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VUF7_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 1.820e-9
Identity = 43/143 (30.07%), Postives = 76/143 (53.15%), Query Frame = 2 
Query:    2 SMGPLVATSISLYRLRVLEPLLGSRKFGALATITGVMSLPFEATAAV---YFNTVR-LTPGPLPVVFALLVMYYAVVPPLKRRLFGVLGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTLSIQSIRLPNFV 418
            S+G  VA +  +Y+++++E   GS K+ AL  I+ V S   +  A V    F  ++ +  GP  ++F+++  +  +VP       G+LG + +DK+F F     L       S++P +CG +VG MY  D+  I++ R P +V
Sbjct:   63 SIGTTVAGTWLIYKMKIVERRYGSSKYAALIFISFVASTLLQTGALVAGSQFGYIKSIASGPYAIIFSIIYQFQKIVPTSYHV--GMLGFNITDKSFVFIATAQLLLSSSSASIIPCLCGLVVGSMY--DSTGIKAWRFPKWV 201
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: UPI001FB166CF (rhomboid-like protein 20 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB166CF)

HSP 1 Score: 69.3 bits (168), Expect = 1.860e-9
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 2 
Query:   35 LYRLRVLEPLLGSRKFGALATITGVMSLPFEATAAVYFNTVRL---TPGPLPVVFALLVMYYAVVPPLKRRLFGVLGIDFSDKAFTFCVAGMLACCEGWN-SVVPAVCGALVGGMYLVDTLSIQSIRLPNFVYRCCSKLWLPLLGTS 463
            LY  RV E  +GS K+      +   SL FE           L   + GP  V+F+  V ++  +P   R  F V G+ FSDK+F + +AG+      W  S+VP +CG LVG +Y ++ L I+ ++ P+F+    S+L     G++
Sbjct:   73 LYYFRVFERQIGSNKYSVFILFSIFGSLLFEVLTLALLRGSSLNMISSGPYGVLFSSFVPFFLDIPVSTR--FRVFGLHFSDKSFIY-LAGIQLLLSSWKKSIVPGICGILVGSLYRLNILGIRRLKSPDFIASFFSRLSFSSTGST 216
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: A0A1Y2E5W3_9FUNG (UBA domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2E5W3_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 4.410e-8
Identity = 42/164 (25.61%), Postives = 79/164 (48.17%), Query Frame = 2 
Query:    8 GPLVATSISLYRLRVLEPLLGSRKFGALATITGVMSLPFEATAAVYFNTVRLTP----GPLPVVFALLVMYYAVVPPLKRRLFGVLGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTLSIQSIRLPNFVYRCCSKLWLPLLGTSRRPTTGAP 487
            G L+ + + LY+ R+LE   GS K+        +++   E    +  NT+ +      GP  ++ + L +YY  VP  +     +LGI+FSDK F++ +A  L   E  +++   + G + G +Y  + L +++ R P F+     K   P++G  +  +   P
Sbjct:   75 GSLIFSLLLLYQFRILERQRGSSKYICYIITVEILTSTLETLYIIVMNTLNIKAIIPSGPYAILASTLYLYYKTVP--ESFTMKILGINFSDKIFSYLLAFQLYFSESISTLPSLIIGLISGILYNSNILGMKNWRFPKFIQNIFKKYVAPIVGIKKTRSLSIP 236
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: M4BUI6_HYAAE (UBA domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUI6_HYAAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-7
Identity = 53/153 (34.64%), Postives = 82/153 (53.59%), Query Frame = 2 
Query:   17 VATSISLY---RLRVLEPLLGSRKFGALATITGVMSLPFEATA---AVYFNTVRLTPGPLPVVFALLVMYYAVVPPLKRRLFGVLGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTLSIQSIRLPNFVYRCCS--KLWLPL 451
            +A S+ LY   + R+LE LLGSRKF ++     + S   E  A   A  + +  +  GP  V+ A  V +Y  +P L+ R F V G+ FSDK+ T+ +  +L     + ++VP + G+ +G   L +T  +  +RLP+FV   CS  KL  PL
Sbjct:   64 LAVSLGLYVVFQFRILERLLGSRKFSSIVVYVLLTSGALELAALTLAPSWLSKSIAGGPYSVLGAFAVYFYKFIPKLQLRTFSVWGLHFSDKSSTYLLMLVLLA-HDFRALVPFLGGSFLG--LLFNTTPLGRLRLPSFV---CSMFKLLHPL 210
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: A0A1Q8RY46_9PEZI (DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Colletotrichum chlorophyti TaxID=708187 RepID=A0A1Q8RY46_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 1.530e-7
Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 2 
Query:   26 SISLYRLRVLEPLLGSRKFGALATITGV---------MSLPFEATAAVYFNTVRLTPGPLPVVFALLVMYYAVVPPLKRRLFGV----------LGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTL--SIQSIRLPNFV 418
            S++LY LRV+E + GSRK+ +   ++ +         +S+     +A  FN   +  GP P++FA+L  Y+AVVP + R               +G+ FSDK++ + +A  LA  +   S++ A+ G +VG  +  D L  S+   RLP ++
Sbjct:   66 SMTLYHLRVIEQIWGSRKYASFILVSTLFTSVIPPVFLSIVLRPLSASLFN--YMPAGPTPIIFAILAQYHAVVPHIYRYRVAASAAPPTNDQFIGLTFSDKSYRYALALQLALFQWPGSLLGALIGWVVGHSWRNDVLPGSMTKWRLPGWM 215
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: A0A4U6X2W3_9PEZI (DSC E3 ubiquitin ligase complex subunit 2 n=11 Tax=Colletotrichum TaxID=5455 RepID=A0A4U6X2W3_9PEZI)

HSP 1 Score: 62.0 bits (149), Expect = 3.730e-7
Identity = 45/152 (29.61%), Postives = 77/152 (50.66%), Query Frame = 2 
Query:   26 SISLYRLRVLEPLLGSRKFGALATITGV---------MSLPFEATAAVYFNTVRLTPGPLPVVFALLVMYYAVVPPLKRRLFGV----------LGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTL--SIQSIRLPNFV 418
            S++LY LRV+E + GSRK+ +   ++ +         +SL      A  FN   +  GP P++FA+L  Y+AV+P + R               +G+ FSDK++ + +A  LA  +   S++ A  G +VG  +  D L  ++   RLP ++
Sbjct:   66 SMTLYHLRVIEQIWGSRKYASFVAVSALFTAVVPPVLLSLVLRPLTAGLFN--YMPAGPTPIIFAVLAQYHAVIPHIYRYRVAASSAPPTTDQFVGLTFSDKSYRYALALQLALFQWPGSLLGAAIGWVVGYSWRNDLLPGAVTKWRLPGWM 215
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BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: A0A8K0TLE2_9PEZI (UBA domain-containing protein Ucp14 n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TLE2_9PEZI)

HSP 1 Score: 61.2 bits (147), Expect = 7.080e-7
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 2 
Query:   26 SISLYRLRVLEPLLGSRKFGALATITGVMSLPFEATAAVYFNTVRLTP-----------GPLPVVFALLVMYYAVVP-------------PLKRRLFGVLGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTLSIQSIRLPNFVYRCCSKLWLPLLGTSRR 469
            SI+LY +R+LE + GSRK+ +    T V++    A       TV L P           GP P++FA+L  Y+A++P             P     F   G+ FSDK++ + +A  LA  +   SV+ A+ G +VG  +  D L       PN V R     WL  + T RR
Sbjct:   66 SITLYNMRILEQMWGSRKYASFLVTTAVLT----AVIPPVILTVFLRPITRGLFNYLPAGPTPLIFAILSQYHALIPHIYSYRVATSAAAPSSNEPFS--GLTFSDKSYRYALALQLALFQWPGSVLGALVGWVVGHAWRNDLL-------PNIVTRWRVPGWLVGVRTQRR 224
[Close]
BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Match: L2GHJ2_COLFN (DSC E3 ubiquitin ligase complex subunit 2 n=6 Tax=Colletotrichum gloeosporioides species complex TaxID=2707338 RepID=L2GHJ2_COLFN)

HSP 1 Score: 60.8 bits (146), Expect = 8.980e-7
Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 2 
Query:   26 SISLYRLRVLEPLLGSRKFGALATITGV---------MSLPFEATAAVYFNTVRLTPGPLPVVFALLVMYYAVVPPLKRRLFGV----------LGIDFSDKAFTFCVAGMLACCEGWNSVVPAVCGALVGGMYLVDTL--SIQSIRLPNFV 418
            S++LY LRV+E + GSRK+ +   ++ +         +SL      A  FN   +  GP P++FA+L  Y+AV+P + R               +G+ FSDK++ + +A  LA  +   S++ A+ G +VG  +  D L  ++   RLP ++
Sbjct:   66 SMTLYHLRVIEQMWGSRKYASFILVSSLFTAVIPPVFLSLVLRPLTAGLFN--YMPAGPTPIIFAILAQYHAVIPHIYRYRVAASAAPPTNDQFVGLTFSDKSYRYALAIQLALFQWPGSLLGALIGWVVGYSWRNDFLPGAMTKWRLPGWM 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17441.4126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY80_9PHAE1.480e-6874.66UBA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A068S933_9FUNG6.470e-1131.97CUE domain-containing protein n=2 Tax=Lichtheimia ... [more]
A0A8H7VUF7_9FUNG1.820e-930.07Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
UPI001FB166CF1.860e-931.97rhomboid-like protein 20 n=1 Tax=Impatiens glandul... [more]
A0A1Y2E5W3_9FUNG4.410e-825.61UBA domain-containing protein n=1 Tax=Neocallimast... [more]
M4BUI6_HYAAE1.050e-734.64UBA domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A1Q8RY46_9PEZI1.530e-730.26DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=... [more]
A0A4U6X2W3_9PEZI3.730e-729.61DSC E3 ubiquitin ligase complex subunit 2 n=11 Tax... [more]
A0A8K0TLE2_9PEZI7.080e-731.40UBA domain-containing protein Ucp14 n=1 Tax=Plecto... [more]
L2GHJ2_COLFN8.980e-729.61DSC E3 ubiquitin ligase complex subunit 2 n=6 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17441contigH-paniculata_contig17441:1562..4989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.3
Seed ortholog evalue2.1e-58
Seed eggNOG ortholog2880.D7FMP5
Preferred nameUBAC2
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010559,GO:0010604,GO:0010605,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030162,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0032933,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034613,GO:0035103,GO:0042176,GO:0042177,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044695,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051716,GO:0060049,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070972,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0098588,GO:0098791,GO:0098796,GO:1900037,GO:1900039,GO:1901564,GO:1901799,GO:1902494,GO:1902680,GO:1903018,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Ubiquitin-associated domain-containing protein
EggNOG OGsKOG4463@1,KOG4463@2759
Ec32 ortholog descriptionUbiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
Ec32 orthologEc-23_001100.1
EC3.4.22.15
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Exons3
Model size1277
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17441.4126.1prot_H-paniculata_contig17441.4126.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17441 1566..4331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.04834-UTR-H-paniculata_contig17441:1561..15651622929371.04834-UTR-H-paniculata_contig17441:1561..1565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17441 1562..1565 +
1691480834.2935426-UTR-H-paniculata_contig17441:1561..15651691480834.2935426-UTR-H-paniculata_contig17441:1561..1565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17441 1562..1565 +
1622929371.1344533-UTR-H-paniculata_contig17441:4331..49891622929371.1344533-UTR-H-paniculata_contig17441:4331..4989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17441 4332..4989 +
1691480834.3295321-UTR-H-paniculata_contig17441:4331..49891691480834.3295321-UTR-H-paniculata_contig17441:4331..4989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17441 4332..4989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.0888207-CDS-H-paniculata_contig17441:1565..18621622929371.0888207-CDS-H-paniculata_contig17441:1565..1862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17441 1566..1862 +
1691480834.3049042-CDS-H-paniculata_contig17441:1565..18621691480834.3049042-CDS-H-paniculata_contig17441:1565..1862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17441 1566..1862 +
1622929371.1056235-CDS-H-paniculata_contig17441:3158..32901622929371.1056235-CDS-H-paniculata_contig17441:3158..3290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17441 3159..3290 +
1691480834.3131433-CDS-H-paniculata_contig17441:3158..32901691480834.3131433-CDS-H-paniculata_contig17441:3158..3290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17441 3159..3290 +
1622929371.12268-CDS-H-paniculata_contig17441:4145..43311622929371.12268-CDS-H-paniculata_contig17441:4145..4331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17441 4146..4331 +
1691480834.3212943-CDS-H-paniculata_contig17441:4145..43311691480834.3212943-CDS-H-paniculata_contig17441:4145..4331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17441 4146..4331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17441.4126.1

>prot_H-paniculata_contig17441.4126.1 ID=prot_H-paniculata_contig17441.4126.1|Name=mRNA_H-paniculata_contig17441.4126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MGPLVATSISLYRLRVLEPLLGSRKFGALATITGVMSLPFEATAAVYFNT
VRLTPGPLPVVFALLVMYYAVVPPLKRRLFGVLGIDFSDKAFTFCVAGML
ACCEGWNSVVPAVCGALVGGMYLVDTLSIQSIRLPNFVYRCCSKLWLPLL
GTSRRPTTGAPPGLSRSGPRRPRSMGSPPLMGAGGGGLISFLNPRQLPVS
IFGV*
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mRNA from alignment at H-paniculata_contig17441:1562..4989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17441.4126.1 ID=mRNA_H-paniculata_contig17441.4126.1|Name=mRNA_H-paniculata_contig17441.4126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3428bp|location=Sequence derived from alignment at H-paniculata_contig17441:1562..4989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCATGGGGCCGTTGGTGGCCACGTCTATATCTCTTTACCGCCTCCGCG
TGTTGGAACCTCTGCTCGGATCACGAAAGTTTGGCGCTCTCGCGACCATC
ACGGGGGTCATGTCGCTACCGTTCGAGGCAACGGCTGCGGTCTACTTCAA
CACGGTCCGGCTCACGCCCGGACCGTTGCCGGTGGTTTTCGCGCTGCTGG
TGATGTATTATGCGGTGGTGCCGCCGCTGAAGCGTCGGCTGTTCGGTGTC
CTCGGCATAGATTTCAGCGACAAAGCGTTCACGTTCTGCGTCGCCGGCAT
GGTGAGTACTGACTAGTATTTATTGCAAGGAGCATAGGAATGGGCTTAAG
CTCCTCCCCTCACAGCGCTTACGATGTGTGTTAACAGTGGTTACATATAC
CGGGGTGGAAAGGAAAGGAGCACTAGTTACTTAATACCATCGTTGTTGCG
TTTTCCCCACCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTTTGTGTTTATTATTTCGATCCTTTCACGGCAAGACGTTTCCTGATATA
TTTTTTGTTTATTTCGGAAAAATCTGGAAAAAACGAAAAATATTACATAC
TGTAGGATCCAAAAAAATAGAGAAGGAAAATAATCGTTCATGGTTGTTTG
TGAAAAATCTTAAAAAAAAATAAAAATAAAATAAAATAAAAATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATGAGAGAAAGTAACATCA
TAAAAACATAACAGTTAACGTCTCGCGCGTGCAGCATTGCAAGCGAAGTC
CGCAGTGTCGTTTTCGGTCTTCGGGTGATCCAAGTATCTATTACACTTCG
CACACGTTTTGACCTGTTCCAGCTTTACCCTAGCAAACACCAACGCAAAC
TTATTCAAGGAAGTAAGTAAAAAAAACACGATGGGCTTGGATTTCTCAGC
ATAAAATCTCTTAATTGCGGTGTCGTGTGCTGTACCTACCCGTACACATG
CATGCATGCATACATACATGCATATTAGTACCAACATGAAATGTTCTCTA
GAGATGTACACCTATGTACCTGTCCGGTAACTCGCTGACCTAGCTGGCCT
TATTGGTGGCAAAATTTCCACTGGGCCAATCAGGCACCGGAATGGCTAAT
GACTTACCTACCTGTCCATGGCCAACCGAACCGGCTGGTTGGCCATGGAC
AGGTGTACCGGGCAGGTTGTTATAAAAGCCTGATATCTTGTTGGTGTTGA
CATTTGCACAACTTGAATGAAGGGTTCATTTTTCAAGAAAAAACACGTTG
ATGGAACCTTGAACCTTCACTCCACCTTAATGCTCCAAAGTAGAAAATAG
GCAGTGCTTATAGGTCATACTCTAGAATCAAATACTCCATGAAGGGGTAG
GGGTGAAAGACCTCCAGCTATCTCTCTATAGCTACCGATATAAAGCGGGT
TTTGGAAAAATGCTGGGTATGCTCGTGCTATCATACTTTCAAAAATCGTG
AAGACCTTCATTCATCTTTATCCGAGGTTTGGACATTTGTCTGTGTTTTT
TTGTCTGTTCTCCGCCTCTTACCTCTTGCCTTGTCATCCCCATCTAGCTG
GCGTGCTGCGAGGGTTGGAATTCTGTCGTGCCTGCCGTGTGCGGAGCTCT
CGTCGGCGGCATGTACCTGGTGGACACGTTATCTATCCAGTCCATACGGT
TGCCAAACTTCGTGTACCGATGCTGTTCCGTGAGTGATCTATTACTACGT
TGCTGCTAATACTGCTTCGTGGGTGATGTATATATGTATGCTATCGGTAG
AGATATGCAGTTCTGTTGTATCGGTGATGTGTACCGTTGGGTGAAAACAC
CAAATAGCATTGTTATGTATCGGTGCTAGGCTGGCTGTAAGTGGTGTGCT
GCGCTATTACTTTCGCCATGTATACTGTTTGTTACTATTTTGTGTGAGGG
CGTGGGTCGGCCGAACTCTTGCGATAAACGCGTGAAATGTATTTCCTTGC
AATTGAACATATTCTTTGTTGCTCGGCTCCGTAACGGGCTTCGCGGTGTA
CAAGTCATGTTTCTTTCATGGACCAGCTCGGCTACGGTGCCGCAATTTCA
CGAGCCGCTGTGACCTGACTCATCAATTACCGGCCCATCACCCTAAAACC
AATTACCGGTACATTTTCCTCCCTCCCCTCTCCTCCCCGGTTGTTATGTG
TTGTTCTCCTTACACGATTGTTGTTACTGTTACTTATATCTATCTATCCC
TCTTCTCTGTCTGTCTGTCCGTCTGTCTGTCTGTCTGTCTCTCCGTCTCT
CCGTCTCTCCGTCTCTCCGTCTCTCCGTCTCTCCGCCTCTCCGCCTCTCC
GTCTCTCCGTCTCTCCGTCTCTCCGTCTCTCCGTCTCTCCCTCTCTCCGT
CTCTCCGTCTCTCCGTCTCCGTCTCTCCGTCTCTCTCTCCCCCTCCCATG
CATCTCCTCTTCCATTTCATTCTTCATCCGGACAACAACGACAACAACAA
CAACAACAACAACGACAACAACAACAACAACAACAACAACAACGACAACA
ACAACAACAACAACAACAACAACAACAACAACAGAAATTGTGGTTACCGC
TGCTAGGAACTTCGCGCAGACCGACCACCGGCGCACCACCAGGCCTTTCC
CGGAGCGGCCCGCGGCGGCCGCGATCTATGGGATCACCACCGCTCATGGG
GGCGGGGGGCGGTGGTCTTATATCTTTCTTGAACCCAAGACAATTGCCAG
TGAGCATCTTCGGCGTGTGAAGGCATTTTTGGTTTTGGGGCCGACTTCGA
TTTGAGACTATCGCCAGATTTGGGCTGGGTAATACCAAATACGACGAAGC
GCAATTTCGTGTGCGGTACTTACAGCCACGCCATTTAGGCCAACTGTTAT
GAGGACGGGAATTGGAATTCTCCAGCAGGCCTCTATCTTTCCCAGTCATG
ATGAAAAAAATATCTCATCTGTGACCGAAGTTCTCCGTTTAAATGAGAAT
TGAAGTCAAACTATGATGGAGCAGAATCCAGTCACGTATTACGGTTCATC
GCACTGCAGAGAATTATTGCGAAGGACAGGCTTTCTATCATGATGTTAAA
CTTGGCGCACATAATTTCACAGATTTGGAGAGTTGGATGCGAAAGGGTTT
GTCTCGATCAGTGTAGGGGTGAGTCGAGTTGTCGCTGCTGTTGCGGTGTT
GTGCACTCACGAAATAACGACAAAATACAGCTTGCACCCAGTCACGTACG
TCACGTACACGTTTCTCATCCCCCACAACAGTTGGCCTTGATAACTTCGG
CAGAGGAATTGCGTTGTGACTGGTGCCTTGATCATTGATTAGGGCGATGG
CGTAATTAATTCCCTAGAGCTTGTCTTGTATTTTGTGCTGGATTTTGAGG
AAAACCGGGGTTGCGTGATGTGTCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17441:1562..4989+

>mRNA_H-paniculata_contig17441.4126.1 ID=mRNA_H-paniculata_contig17441.4126.1|Name=mRNA_H-paniculata_contig17441.4126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig17441:1562..4989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCCGTTGGTGGCCACGTCTATATCTCTTTACCGCCTCCGCGTGTT
GGAACCTCTGCTCGGATCACGAAAGTTTGGCGCTCTCGCGACCATCACGG
GGGTCATGTCGCTACCGTTCGAGGCAACGGCTGCGGTCTACTTCAACACG
GTCCGGCTCACGCCCGGACCGTTGCCGGTGGTTTTCGCGCTGCTGGTGAT
GTATTATGCGGTGGTGCCGCCGCTGAAGCGTCGGCTGTTCGGTGTCCTCG
GCATAGATTTCAGCGACAAAGCGTTCACGTTCTGCGTCGCCGGCATGATG
GGGCCGTTGGTGGCCACGTCTATATCTCTTTACCGCCTCCGCGTGTTGGA
ACCTCTGCTCGGATCACGAAAGTTTGGCGCTCTCGCGACCATCACGGGGG
TCATGTCGCTACCGTTCGAGGCAACGGCTGCGGTCTACTTCAACACGGTC
CGGCTCACGCCCGGACCGTTGCCGGTGGTTTTCGCGCTGCTGGTGATGTA
TTATGCGGTGGTGCCGCCGCTGAAGCGTCGGCTGTTCGGTGTCCTCGGCA
TAGATTTCAGCGACAAAGCGTTCACGTTCTGCGTCGCCGGCATGCTGGCG
TGCTGCGAGGGTTGGAATTCTGTCGTGCCTGCCGTGTGCGGAGCTCTCGT
CGGCGGCATGTACCTGGTGGACACGTTATCTATCCAGTCCATACGGTTGC
CAAACTTCGTGTACCGATGCTGTTCCCTGGCGTGCTGCGAGGGTTGGAAT
TCTGTCGTGCCTGCCGTGTGCGGAGCTCTCGTCGGCGGCATGTACCTGGT
GGACACGTTATCTATCCAGTCCATACGGTTGCCAAACTTCGTGTACCGAT
GCTGTTCCAAATTGTGGTTACCGCTGCTAGGAACTTCGCGCAGACCGACC
ACCGGCGCACCACCAGGCCTTTCCCGGAGCGGCCCGCGGCGGCCGCGATC
TATGGGATCACCACCGCTCATGGGGGCGGGGGGCGGTGGTCTTATATCTT
TCTTGAACCCAAGACAATTGCCAGTGAGCATCTTCGGCGTGTGAAAATTG
TGGTTACCGCTGCTAGGAACTTCGCGCAGACCGACCACCGGCGCACCACC
AGGCCTTTCCCGGAGCGGCCCGCGGCGGCCGCGATCTATGGGATCACCAC
CGCTCATGGGGGCGGGGGGCGGTGGTCTTATATCTTTCTTGAACCCAAGA
CAATTGCCAGTGAGCATCTTCGGCGTGTGA
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