mRNA_H-paniculata_contig17418.4112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17418.4112.1
Unique NamemRNA_H-paniculata_contig17418.4112.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: D7FPY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY2_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.230e-36
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQLYSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            +QDP+SDNLGTTIWDASVILVRYMERNPQLYSRR+L GKRVLELGAGCGLAGMYFALQGAHVTFTDL
Sbjct:   27 AQDPTSDNLGTTIWDASVILVRYMERNPQLYSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDL 93          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A1D2A3F6_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3F6_AUXPR)

HSP 1 Score: 88.6 bits (218), Expect = 4.220e-21
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            +QDP+S+NLGTT+WDAS++L +++E+N +   +S  ++ GKR LELGAG GLAG   AL GAHVTFTDL
Sbjct:   27 AQDPNSENLGTTVWDASIVLAKFLEKNARKGEWSTVRVKGKRCLELGAGMGLAGAAMALMGAHVTFTDL 95          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A835YRK7_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.120e-20
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQLYSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            +Q P S NLGT++WDASVILV Y+  N + +++R + GKRVLELGAGCGLAG+Y A  GA VT TDL
Sbjct:   25 AQQPGSGNLGTSVWDASVILVHYLNDNSKQFNQRTMDGKRVLELGAGCGLAGIYCATLGADVTLTDL 91          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A1D1ZWE0_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZWE0_AUXPR)

HSP 1 Score: 88.6 bits (218), Expect = 6.040e-20
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            +QDP+S+NLGTT+WDAS++L +++E+N +   +S  ++ GKR LELGAG GLAG   AL GAHVTFTDL
Sbjct:   27 AQDPNSENLGTTVWDASIVLAKFLEKNARKGEWSTVRVKGKRCLELGAGMGLAGAAMALMGAHVTFTDL 95          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A1Y1HYS1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYS1_KLENI)

HSP 1 Score: 89.7 bits (221), Expect = 9.740e-20
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTD 198
            +QDP+S +LG T+WDAS++L +Y+ERN     +SR+KLAGKR LELGAGCGLAGM   L G HV  TD
Sbjct:   25 AQDPNSQHLGKTVWDASMVLAKYLERNENKGEFSRKKLAGKRALELGAGCGLAGMGLCLLGCHVVTTD 92          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A2P6TLS3_CHLSO (Uncharacterized protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLS3_CHLSO)

HSP 1 Score: 89.4 bits (220), Expect = 1.680e-19
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            +QDP+S NLGTT+WDAS++L +Y+E+N +   +SR K+ GKR LELGAG GLAGM  AL GA V FTD+
Sbjct:   25 AQDPNSSNLGTTVWDASIVLAKYIEKNSRRGDFSRPKVRGKRALELGAGMGLAGMALALLGAEVVFTDI 93          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A2P6V8H3_9CHLO (Lysine methyltransferase METTL21D isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V8H3_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 4.900e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            +QDP+S+NLGTT+WDAS++L +Y+E+N +   +SR+++ GKR LELGAG GLAGM  AL G  V FTD+
Sbjct:   25 AQDPNSNNLGTTVWDASIVLAKYIEKNSRRGDFSRQRVRGKRALELGAGMGLAGMALALLGCDVAFTDI 93          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A8J9SIG8_9CHLO (Protein-lysine methyltransferase METTL21D n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SIG8_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 1.720e-18
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            SQDPSS NLGTT+WDAS++L +++E+N +   +SR  + GKR +ELGAG GL GM FAL GA V  TDL
Sbjct:   27 SQDPSSMNLGTTVWDASIVLAKFLEKNARKGEFSRANVKGKRAIELGAGPGLGGMAFALLGADVLLTDL 95          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: E1ZD88_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZD88_CHLVA)

HSP 1 Score: 86.3 bits (212), Expect = 1.790e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 SQDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTDL 201
            +QDP+S NLGTT+WDAS++L +Y+E+N +   +SR K+ G++ LELGAG GLAGM  AL GA V FTD+
Sbjct:   25 AQDPNSSNLGTTVWDASIVLAKYIEKNSRRGDFSRPKVRGRQALELGAGMGLAGMALALLGADVAFTDI 93          
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Match: A0A2R6W9M0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W9M0_MARPO)

HSP 1 Score: 85.9 bits (211), Expect = 1.890e-18
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    4 QDPSSDNLGTTIWDASVILVRYMERNPQL--YSRRKLAGKRVLELGAGCGLAGMYFALQGAHVTFTD 198
            QDP+S +LGTT+WD+S++ V+++ERN +   +SR KLAGKRV+ELGAGCGLAG+  AL G  V  TD
Sbjct:   26 QDPNSKHLGTTVWDSSLVFVKFLERNSKKGEFSRAKLAGKRVIELGAGCGLAGLGMALLGCDVVVTD 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17418.4112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY2_ECTSI4.230e-3694.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1D2A3F6_AUXPR4.220e-2159.42Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A835YRK7_9STRA1.120e-2062.69Putative methyltransferase-domain-containing prote... [more]
A0A1D1ZWE0_AUXPR6.040e-2059.42Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A1Y1HYS1_KLENI9.740e-2061.76Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A2P6TLS3_CHLSO1.680e-1960.87Uncharacterized protein n=1 Tax=Chlorella sorokini... [more]
A0A2P6V8H3_9CHLO4.900e-1957.97Lysine methyltransferase METTL21D isoform X1 n=1 T... [more]
A0A8J9SIG8_9CHLO1.720e-1859.42Protein-lysine methyltransferase METTL21D n=1 Tax=... [more]
E1ZD88_CHLVA1.790e-1857.97Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A2R6W9M0_MARPO1.890e-1859.70Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17418contigH-paniculata_contig17418:2458..2658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D7FPY2
Preferred nameVCPKMT
KEGG koko:K21806
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0019899,GO:0032259,GO:0032780,GO:0032991,GO:0036211,GO:0043086,GO:0043170,GO:0043412,GO:0043414,GO:0043462,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051117,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.534352-CDS-H-paniculata_contig17418:2457..26581622929369.534352-CDS-H-paniculata_contig17418:2457..2658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17418 2458..2658 -
1691480833.656897-CDS-H-paniculata_contig17418:2457..26581691480833.656897-CDS-H-paniculata_contig17418:2457..2658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17418 2458..2658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17418.4112.1prot_H-paniculata_contig17418.4112.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17418 2458..2658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17418.4112.1

>prot_H-paniculata_contig17418.4112.1 ID=prot_H-paniculata_contig17418.4112.1|Name=mRNA_H-paniculata_contig17418.4112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
SQDPSSDNLGTTIWDASVILVRYMERNPQLYSRRKLAGKRVLELGAGCGL
AGMYFALQGAHVTFTDL
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mRNA from alignment at H-paniculata_contig17418:2458..2658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17418.4112.1 ID=mRNA_H-paniculata_contig17418.4112.1|Name=mRNA_H-paniculata_contig17418.4112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig17418:2458..2658- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACAGGATCCGAGCTCGGACAACCTGGGTACCACGATCTGGGATGCCAG TGTCATTCTCGTGCGTTACATGGAGCGAAACCCGCAGCTGTACTCCCGGC GCAAGCTTGCGGGAAAGAGGGTACTCGAGCTGGGAGCAGGGTGTGGCCTG GCGGGAATGTATTTCGCGCTGCAGGGCGCTCACGTTACGTTTACCGACCT G
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Coding sequence (CDS) from alignment at H-paniculata_contig17418:2458..2658-

>mRNA_H-paniculata_contig17418.4112.1 ID=mRNA_H-paniculata_contig17418.4112.1|Name=mRNA_H-paniculata_contig17418.4112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig17418:2458..2658- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACAGGATCCGAGCTCGGACAACCTGGGTACCACGATCTGGGATGCCAG
TGTCATTCTCGTGCGTTACATGGAGCGAAACCCGCAGCTGTACTCCCGGC
GCAAGCTTGCGGGAAAGAGGGTACTCGAGCTGGGAGCAGGGTGTGGCCTG
GCGGGAATGTATTTCGCGCTGCAGGGCGCTCACGTTACGTTTACCGACCT
GTCACAGGATCCGAGCTCGGACAACCTGGGTACCACGATCTGGGATGCCA
GTGTCATTCTCGTGCGTTACATGGAGCGAAACCCGCAGCTGTACTCCCGG
CGCAAGCTTGCGGGAAAGAGGGTACTCGAGCTGGGAGCAGGGTGTGGCCT
GGCGGGAATGTATTTCGCGCTGCAGGGCGCTCACGTTACGTTTACCGACC
TG
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