mRNA_H-paniculata_contig1735.4086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE) HSP 1 Score: 138 bits (347), Expect = 3.610e-36 Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG DR+GSGGAANFARRSPFPMINILRT QVRL Q+SIPTGLVYKQNE+VLE++GAG LQKMLE RDW GLEG KV
Sbjct: 364 RDGRDRIGSGGAANFARRSPFPMINILRTNQVRLAQKSIPTGLVYKQNEEVLEEVGAGDLQKMLEVRDWTGLEGKKV 440
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI) HSP 1 Score: 136 bits (342), Expect = 5.820e-36 Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNK 264
RDG DR+GSGGAANFARRSPFPMINILRT QVRL Q+SIPTGLVYKQNE+VLE++GAG LQKMLE RDW GLEG K
Sbjct: 302 RDGRDRIGSGGAANFARRSPFPMINILRTNQVRLAQKSIPTGLVYKQNEEVLEEVGAGDLQKMLEVRDWTGLEGKK 377
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A835ZCU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU6_9STRA) HSP 1 Score: 125 bits (313), Expect = 9.750e-32 Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG RLG GAANFARRSPFPMINILRT QVRL QRS+PTGLVYKQNE+VLE IGA LQ+MLE RDW+GL G +V
Sbjct: 280 RDGQARLGDAGAANFARRSPFPMINILRTPQVRLAQRSVPTGLVYKQNEEVLEAIGAAPLQRMLEARDWSGLAGQRV 356
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S0Z2B5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2B5_9CRYP) HSP 1 Score: 112 bits (279), Expect = 1.580e-29 Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG DR+G G AANFARRSPFPMINILRTKQVRL Q+SIPTGLVY QNE+ L ++G+ LQ+ML RDW L +V
Sbjct: 65 RDGADRMGGGSAANFARRSPFPMINILRTKQVRLAQKSIPTGLVYTQNEETLNEVGSDNLQRMLVERDWEELAETRV 141
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S0NF62_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF62_9CRYP) HSP 1 Score: 111 bits (277), Expect = 4.140e-27 Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG DR+G GAANFARRS FPMINILRT QVRL Q+SIPTGLVY QNE+ L ++GA LQKML RDW+ L KV
Sbjct: 333 RDGADRMGESGAANFARRSSFPMINILRTNQVRLAQKSIPTGLVYTQNEETLMEVGAENLQKMLVARDWSPLTNTKV 409
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S3XYD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD6_HETAK) HSP 1 Score: 111 bits (277), Expect = 8.620e-27 Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG DRLG GAAN+ARRSP PMINILRT QVR GQ+ IPTGLVY QNE L +IG LQ ML++ DW+GLEG V
Sbjct: 325 RDGQDRLGDAGAANYARRSPLPMINILRTDQVRTGQKGIPTGLVYTQNEKTLAEIGVSRLQTMLDSCDWSGLEGTAV 401
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S0TPK1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPK1_HEMAN) HSP 1 Score: 107 bits (267), Expect = 1.240e-26 Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG DR+G AANFARRSPFPMINILRTKQVRL Q+SIPTGLVY QNE+ L ++G LQ+ML RDW L +V
Sbjct: 184 RDGADRMGDQSAANFARRSPFPMINILRTKQVRLAQKSIPTGLVYTQNEETLSEVGVEDLQRMLIERDWKQLAETRV 260
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: L1JRB3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRB3_GUITC) HSP 1 Score: 108 bits (270), Expect = 1.770e-26 Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG DR+G GAANFARRS FPMINILRT QVRL Q+SIPTGLVY QNE+ L ++GA LQKML RDW+ L K
Sbjct: 233 RDGADRMGESGAANFARRSSFPMINILRTNQVRLAQKSIPTGLVYTQNEETLMEVGAENLQKMLVERDWSSLMVRKA 309
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S4T8N8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8N8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.380e-24 Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG +R G G AAN+ARRSP+PMIN++RT QVR Q+ IPTGLVY QNE L IG TL+KML RDW ++ KV
Sbjct: 7 RDGGERSGMGSAANYARRSPWPMINLIRTNQVRAAQKGIPTGLVYTQNEKTLSGIGTKTLEKMLRLRDWEDIKDIKV 83
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S2WW48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW48_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.800e-24 Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
RDG RLG+ GA N+ARRSPFPMINILRT QVR+ Q++IPTGLVY+QNE VL IG LQ ML TRDW L +V
Sbjct: 329 RDGRQRLGNEGAGNYARRSPFPMINILRTPQVRIAQKAIPTGLVYEQNERVLAGIGGSKLQDMLVTRDWEELRQQRV 405 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1735.4086.1 >prot_H-paniculata_contig1735.4086.1 ID=prot_H-paniculata_contig1735.4086.1|Name=mRNA_H-paniculata_contig1735.4086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp MRAFFFFFVFDRDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIback to top mRNA from alignment at H-paniculata_contig1735:23638..24573- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1735.4086.1 ID=mRNA_H-paniculata_contig1735.4086.1|Name=mRNA_H-paniculata_contig1735.4086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at H-paniculata_contig1735:23638..24573- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1735:23638..24573- >mRNA_H-paniculata_contig1735.4086.1 ID=mRNA_H-paniculata_contig1735.4086.1|Name=mRNA_H-paniculata_contig1735.4086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig1735:23638..24573- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |