mRNA_H-paniculata_contig17339.4081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.780e-37 Identity = 83/186 (44.62%), Postives = 120/186 (64.52%), Query Frame = 3
Query: 3 DEDNRKIVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKS-WDKGAVVVNTSISASRVFS--DMPFISMYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETWKKTHLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQG 551
+ D +K+V+TA+E FGGLHV+F NAGV P AD+TED ID N K +A+ K+Q+PA+ + KG+++VNTS +A R + M MY+ SKAAAEM++KY A+EGAA VRVN ++PG V TP+ + E L T L +PI E++ ++V+FL S+ A ++TGS + +D G
Sbjct: 66 EADCKKMVDTAIEKFGGLHVAFNNAGVFRAVPFADITEDTIDDLLNINVKSLAWCFKYQIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGG 251
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.780e-36 Identity = 82/185 (44.32%), Postives = 120/185 (64.86%), Query Frame = 3
Query: 9 DNRKIVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKS-WDKGAVVVNTSISASRVFSDMPFIS---MYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETWKKTHLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQG 551
D +K+V+TA+E FGGLHV+F NAGV P D+TED ID N K +A+ LK+Q+PA+ + KG+++VNTS++ R S +P ++ MY+ SKAAAEM++KY A+EGAA VRVN +APG V TP+ + + L T L +P E++ +V+FL S+ A ++TGS + +D G
Sbjct: 70 DCKKMVDTAIEKFGGLHVAFNNAGVFKTVPFVDITEDTIDDILNTNVKSIAWCLKYQIPAMKDTAGGKGSIIVNTSVTGLRP-SALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGG 253
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA) HSP 1 Score: 140 bits (352), Expect = 5.230e-34 Identity = 79/188 (42.02%), Postives = 115/188 (61.17%), Query Frame = 3
Query: 3 DEDNRKIVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKSWDKGAVVVNTSISASRV--FSDMPFISMYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETWKKTHLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQGASL 560
DEDN+++V+T +ET+G L++SFINAGV + P++++ +D + N KGVA+ LK+QLPAI KS KG+VV+N+S + S V F YA +KAA ++++KY A+E RVN IAPG + T L + EE + K HL + E++ V FL SD A +TG++ D GASL
Sbjct: 66 DEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSL-VEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASL 252
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.290e-32 Identity = 79/188 (42.02%), Postives = 115/188 (61.17%), Query Frame = 3
Query: 3 DEDNRKIVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKSWDKGAVVVNTSISASRVFSDMPFISM--YACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETWKKTHLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQGASL 560
DEDN+++V+ A+ET+G ++VSFINAG+ + A++T+ +D + N KGVA+ LK+QL AI KS KG+VV+N+S + V + F S YA +KAAA++++KY A+E RVN IAPG V T L E+ +E K HL + E++ V FL SD A +TG++ D G SL
Sbjct: 67 DEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLG-DFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSL 253
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.920e-32 Identity = 79/192 (41.15%), Postives = 115/192 (59.90%), Query Frame = 3
Query: 3 DEDNRKIVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKSWDKGAVVVNTSISASRVFSDMPFIS--MYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETWKK----THLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQGASL 560
D N++IV+ A+ +G LH++F+NAG +P+ +TE+ D F N K VAFGLKH LPAI KS G+V++N+S A R ++ F +Y+ SKAAA+M++KY A+E + RVN IAPG V+T + +GE +E++ L G+ E++ V FL SD A +TGS+H VD G L
Sbjct: 69 DAANKEIVDAALSAYGKLHIAFLNAGTYGGAPVDQVTEELFDKIFDVNVKSVAFGLKHVLPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAI---MGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGL 257
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: A0A835YKB8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB8_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.250e-31 Identity = 81/188 (43.09%), Postives = 114/188 (60.64%), Query Frame = 3
Query: 3 DEDNRKIVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKSWDKGAVVVNTSISASRV--FSDMPFISMYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETWKKTHLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQGASL 560
DEDN+++V+TA+ET+G L+VSFINAGV P++++ +D+ + N KGVA+ LK+QLPAI KS KG+VV+N+S S V F YA +KAA ++++KY A+E RVN IA G V T L + EE EE K L + E++ V FL SD A +TG++ D G+SL
Sbjct: 69 DEDNKRLVDTALETYGLLNVSFINAGVHRAKPISEVDASMLDTLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCLGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAAGAVFTNL-VGAPEEAFEEMGKMVGLMPRAGRPEEIARCVCFLASDEASFVTGTVLTADGGSSL 255
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.530e-31 Identity = 82/194 (42.27%), Postives = 111/194 (57.22%), Query Frame = 3
Query: 12 NRKIVETAVETFGGLHVSFINAGVVILSPLAD-----LTEDAIDSAFGPNFKGVAFGLKHQLPAIAKSWDKGAVVVNTSISASRVF--SDMPFISMYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETW---KKTHLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQGASLI 563
N+ +V+ A+ +G L V+F NAG +P A+ +T + +D+ NFK V FG K+ LPAI KS G++VVN+S + S S I+ YA SKAA +M+VKY AVE A N RV +APGTV TP+ G+ K E K L + E+V V FLLSD A +TGS+H VD GAS++
Sbjct: 72 NKAMVDLAMSKYGRLDVAFFNAGTFAGAPFAEASLGHVTNEMVDTVMDTNFKSVVFGFKYALPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTDMAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDGGASIV 265
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: A0A835YUN2_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN2_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.390e-31 Identity = 79/189 (41.80%), Postives = 114/189 (60.32%), Query Frame = 3
Query: 3 DEDNRKIVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKSWDKGAVVVNTSISASRVFSDMPFIS--MYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKLEETWKK----THLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQG 551
D N ++V+ A+ T+G LHV+F+NAG +P+ +TE+ + F N K VAFGLKH LPAI +S G+VVVN+S R ++ F +YA SKAAA+M+++Y A+E + RVN +APG VRT L +GE E+ + L G+ +V +LV FL SD A+ +TGS+H +D G
Sbjct: 70 DAANEEMVKAALSTYGKLHVAFLNAGTYGGAPVDQVTEELFNKIFDANVKSVAFGLKHVLPAIERSGGGGSVVVNSSCMGLRAPANPTFTGAGLYAGSKAAADMIMRYAAIEASKHKTRVNSVAPGIVRTEL---MGEGMTEQGYHDFAAPVSLVGRAGTSNEVSALVCFLASDEARFITGSVHEIDGG 255
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: A0A836CPZ3_9STRA (Short-chain dehydrogenase/reductase SDR n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPZ3_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.970e-29 Identity = 74/160 (46.25%), Postives = 97/160 (60.62%), Query Frame = 3
Query: 105 DLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKSWDKGAVVVNTSISASRVFSDMPFIS---MYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLT----IGEEKLEETWKKTHLTGKPIMVEDVVSLVVFLLSDGAQVMTGSIHRVDQGASLI 563
D+T + +D+ F NFK FG K+ LPAI KS +G++VVN+S++ S V S P S YA SKAA +M+VKY AVE A N R+N IAPGTVRTP+ I + ++E K L + E+V FLLSD A +TGS+H VD GASL+
Sbjct: 87 DITNEMVDTVFATNFKSAVFGFKYALPAIEKSGGQGSIVVNSSVAGS-VASASPLASGNNAYAASKAAVDMLVKYAAVEAALHNTRINSIAPGTVRTPIFQVFAPGIQDNDIDELAKGIQLMQRAASPEEVARFTCFLLSDDASFVTGSVHLVDGGASLV 245
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Match: D8LQS5_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS5_ECTSI) HSP 1 Score: 114 bits (286), Expect = 2.790e-26 Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = 3
Query: 21 IVETAVETFGGLHVSFINAGVVILSPLADLTEDAIDSAFGPNFKGVAFGLKHQLPAIAKS-WDKGAVVVNTSISASRVFSD--MPFISMYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEEKL 419
+V+TA++ FGGLHV+F NAGV +P AD+ ED ID N K +A+ K+Q+PA+ S KG+++VNTS +A R + M MYA SKAAAE+++KY A+EGAA VRVN +A G V+TP+ + +E L
Sbjct: 1 MVDTAIQKFGGLHVAFNNAGVYRSAPFADIMEDTIDDLLNINVKSLAWCFKYQIPAMKDSAGGKGSIIVNTSSTALRPSASPGMTGSGMYAASKAAAELLMKYAAIEGAASGVRVNSVARGLVKTPIFGDMPDETL 136 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17339.4081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17339.4081.1 >prot_H-paniculata_contig17339.4081.1 ID=prot_H-paniculata_contig17339.4081.1|Name=mRNA_H-paniculata_contig17339.4081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp MPFISMYACSKAAAEMMVKYGAVEGAAMNVRVNGIAPGTVRTPLSLTIGEback to top mRNA from alignment at H-paniculata_contig17339:1192..4771+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17339.4081.1 ID=mRNA_H-paniculata_contig17339.4081.1|Name=mRNA_H-paniculata_contig17339.4081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3580bp|location=Sequence derived from alignment at H-paniculata_contig17339:1192..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17339:1192..4771+ >mRNA_H-paniculata_contig17339.4081.1 ID=mRNA_H-paniculata_contig17339.4081.1|Name=mRNA_H-paniculata_contig17339.4081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig17339:1192..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |