mRNA_H-paniculata_contig17328.4075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17328.4075.1
Unique NamemRNA_H-paniculata_contig17328.4075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: D7G279_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G279_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 3.490e-24
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALELSVDKLGTAPKLRSDPQAIARSAGEVDFYK 454
            MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALE+   K   +P  RSDPQA+ARSAGEV+FY+
Sbjct:    1 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALEVPSGKPEVSPAKRSDPQAMARSAGEVEFYR 66
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: A0A835Z5J1_9STRA (SPX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-12
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALE------LSVDKLGTAPKLRSDPQAIARSAGEVDFYK 454
            MKFGKN+ RVVELSDPEWSPFW+NYK LKK +K ++       +   +   P   S P+A+++SAGEV F+K
Sbjct:    1 MKFGKNLERVVELSDPEWSPFWLNYKHLKKMLKEVQHTPAPSAAGAPIAKPPNGLSSPEALSKSAGEVAFFK 72
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: A0A4D9D3X8_9STRA (SPX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3X8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.710e-10
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALE-------------LSVDKLGTAPKLRSDPQAIARSAGEVDFYK 454
            MKFGK + +VV LSDPEW+PFW++YK LKK+VK L               SV++ G +     +P+ +A+SAGEV F++
Sbjct:    1 MKFGKQLAKVVALSDPEWAPFWVSYKALKKRVKELTESPPAATQPRDAGSSVNQTGPSTNTEPNPKELAQSAGEVAFFR 79
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: W7TGL0_9STRA (SPX domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGL0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-9
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALE-------------LSVDKLGTAPKLRSDPQAIARSAGEVDFYK 454
            MKFGK + +VV LSDPEW+PFW++YK LKK+VK L               S+++ G +     +P+ +A+SAGEV F++
Sbjct:    1 MKFGKQLAKVVALSDPEWAPFWVSYKALKKRVKELTESPPAATQPRDAGSSINQTGPSTNTEPNPKELAQSAGEVAFFR 79
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: A0A7S2SN02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN02_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.010e-9
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALE--------------------LSVDKLGTAPKLRS---DPQAIARSAGEVDFYK 454
            MKFGK + RV  +SDPEW+PFW+NYK+LKKK+  +E                    +SV+    A  +R+   DP  I  SAGE+ F+K
Sbjct:   20 MKFGKKLLRVQSMSDPEWAPFWVNYKYLKKKINEIETLRSVAQPEAHNSAVPSSASISVNAADAAANVRTEPLDPDTIKESAGEIAFFK 108
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: A0A7S1BF55_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF55_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.890e-8
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALELSVD--------KLGTAPKLRSDPQAIARSAGEVDFYK 454
            MKF KN+ R+ EL+DPEW+PFW+NYK LKK +K L  +++         +G    L   P+ + ++ GE+ F+K
Sbjct:    1 MKFCKNMQRMAELADPEWAPFWVNYKMLKKIIKELPATINTTQRSSSSSVGNNNTLPDSPRKMGKTPGEITFFK 74
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: A0A7R9YCT0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCT0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.580e-6
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALELSVDKLGTAPKLRSDPQ-AIARSAGEVDFY 451
            MKF KN+  VV+LS PEW+PFW++YK LKK++K +  +  + G +PK R   + AIA  A E+ F+
Sbjct:    1 MKFCKNLLEVVDLSHPEWAPFWMDYKTLKKRLKDMS-AAKRSGASPKKRGRREVAIAEDALEIQFF 65
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: A0A7S1XNX0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNX0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-5
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALELSVDKL-GTAPKLRSDPQ-AIARSAGEVDFYK 454
            MKFGKN+  VV +S+PEW+PFWI+YK LKK++K  +++ D   G     +  P+ AIA  A E+ F++
Sbjct:    1 MKFGKNLLEVVAMSNPEWAPFWIDYKMLKKRLK--DMAPDAAAGKQQGAQQQPRGAIASDAKEIAFFR 66
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: M4B756_HYAAE (SPX domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B756_HYAAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-5
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALELSVDKLGTAPKLRSDPQAIARSAGEVDFYK 454
            MKFGK++ R V  S+PEW+PFW+NYK LKK++KA+        TAP   S  + I+ S  EV F++
Sbjct:    1 MKFGKDLLREVLQSNPEWAPFWLNYKTLKKRIKAVT------NTAPHAASQ-RDISESDLEVAFFR 59
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BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Match: A0A7S2E5A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E5A5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.880e-5
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  257 MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKAL 361
            MKF KN+ R+V++SDPEW+P+W NYK LKK +K L
Sbjct:   11 MKFCKNLQRIVDISDPEWAPYWTNYKMLKKLIKEL 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17328.4075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G279_ECTSI3.490e-2480.30SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z5J1_9STRA1.200e-1252.78SPX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D3X8_9STRA6.710e-1044.30SPX domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TGL0_9STRA1.400e-943.04SPX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2SN02_9STRA6.010e-940.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1BF55_9STRA2.890e-840.54Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R9YCT0_9STRA2.580e-646.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XNX0_9STRA1.090e-545.59Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
M4B756_HYAAE1.140e-546.97SPX domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A7S2E5A5_9STRA1.880e-562.86Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17328contigH-paniculata_contig17328:1070..2884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7G279
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to phosphate starvation
EggNOG OGsCOG5036@1,KOG1161@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1187
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17328.4075.1prot_H-paniculata_contig17328.4075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17328 1785..2628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.2966223-UTR-H-paniculata_contig17328:1069..17841622929365.2966223-UTR-H-paniculata_contig17328:1069..1784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17328 1070..1784 -
1691480831.8851593-UTR-H-paniculata_contig17328:1069..17841691480831.8851593-UTR-H-paniculata_contig17328:1069..1784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17328 1070..1784 -
1622929365.3508549-UTR-H-paniculata_contig17328:2628..28841622929365.3508549-UTR-H-paniculata_contig17328:2628..2884Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17328 2629..2884 -
1691480831.9197068-UTR-H-paniculata_contig17328:2628..28841691480831.9197068-UTR-H-paniculata_contig17328:2628..2884Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17328 2629..2884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.3107848-CDS-H-paniculata_contig17328:1784..19011622929365.3107848-CDS-H-paniculata_contig17328:1784..1901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17328 1785..1901 -
1691480831.8977685-CDS-H-paniculata_contig17328:1784..19011691480831.8977685-CDS-H-paniculata_contig17328:1784..1901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17328 1785..1901 -
1622929365.330739-CDS-H-paniculata_contig17328:2529..26281622929365.330739-CDS-H-paniculata_contig17328:2529..2628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17328 2530..2628 -
1691480831.907479-CDS-H-paniculata_contig17328:2529..26281691480831.907479-CDS-H-paniculata_contig17328:2529..2628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17328 2530..2628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17328.4075.1

>prot_H-paniculata_contig17328.4075.1 ID=prot_H-paniculata_contig17328.4075.1|Name=mRNA_H-paniculata_contig17328.4075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MKFGKNIGRVVELSDPEWSPFWINYKFLKKKVKALELSVDKLGTAPKLRS
DPQAIARSAGEVDFYKSECSF*
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mRNA from alignment at H-paniculata_contig17328:1070..2884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17328.4075.1 ID=mRNA_H-paniculata_contig17328.4075.1|Name=mRNA_H-paniculata_contig17328.4075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1815bp|location=Sequence derived from alignment at H-paniculata_contig17328:1070..2884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACGCAGAGCAGGTGGGGAAAGGGTTATCATCGGGAGAGGGGAGGGAG
ATAGAGCTGCAGTGCTAGCAGGGCGAGGTGTACAGGGAGCTGCGATCGTC
ACAGAGCTGCTGTACTATCAGTGTACTCGCTGCATCGTGCTGTGCTAACG
GTAGTGCTGCAGCTGCTGCTGTGTTGTGACGGTGAACAGCGGCAGAACGA
ACGCGATAGGGGAGAACGGAGCTATATATAATTTAGACTGTAGCTGTCTG
AAGACAATGAAGTTTGGTAAAAATATTGGGCGGGTGGTGGAGCTGTCTGA
CCCGGAGTGGTCACCATTTTGGATCAACTACAAGTTCCTCAAGAAGAAGG
TTAAGGTGTGTATACTTGCACCGTAACCATACTGTACTGTCTTTTACCTG
AAGTAAGGTTGCTCATTCCAGCTTGGTGGGTGTGTATGTAAACACGGGCA
CACTGGCTATATCAGACTGACGATTGCGAGCTGCTGCTCATCGCTGGCTC
TCTCGAGTGGAGGTTCAGTGTCACGATTTGCACGGACTTCTCCTCTACAT
AGACAATACGGACCATATATCTTCTCTACTTCACGTCTCCCCCATCAGGT
TCACGGTTGCCCTGGGTATCAATCGGACACGGGTAGAACGGAGTGCAAAC
ATGCCTTCCTGTCATTATTGCACCTACTGGCTGTTAATTCCGAAGGAGTG
GGGTGGGGTTTTGTGGAGAAGCTTGTTGATAATTATACATCTGGGCGTTT
CCCCCCTTGAGGTTTGTGGCCTTTCGACTCTTGCGTTTCCTGAATAACGT
GTACCTCCTATACAATCCATGTGGAGAGCGATGATACCAACGGCTAGATA
CCGGGCATTTCGGCCGACCCTCACCTCCCCCCCCCCCTCCCTCATGTTTC
CCCCTTTCGTCCTCGTGTGTGGTTAACGTACCATCATATATCACATATAT
ATATATACTGTTTGTCGCTGAACAAATGAAAAGGCGCTTGAGCTGTCCGT
GGACAAGCTCGGCACTGCTCCGAAGTTGCGTAGCGATCCTCAAGCTATCG
CCAGGTCGGCGGGTGAGGTTGACTTTTACAAAAGTGAGTGCTCGTTTTGA
CGTCGTCCTCCCCCTTCCCCCTCGTCCAACCAAAGCTTTTACAACAGTAG
TACAAATGTGAGTGAGTGCTGCTTTACTTTATCTATTTATTATGGTCGAT
TATTGAATCTCAGTTACTTACTGACTGACTGTTGCGGTGATTTAACCGCG
ATGTTTCATATCCTCCATTTACTATAAAAATTCGGGTTGTTGATATCTAG
CTACATCACGTCAACGCTGTTTTTCCCCTTGTTCCGGAGTGTGGGTATCG
CTTATAGATGTAGAGTTCTAGTGGTAAAGTGCTTTCGTGGTTTGATGTTT
CTCTCCAGATATCCTTGTCTCCGAGTCGGTCGGTGTTACCCACGAAACAA
AACCCGGCGATATATTTCACTTCTTCAGGAAAGGGCTTGGCTGAGATGTT
TCGCATACTCTTCTCTGTATCGAATATTCGTTTTTTATTTCCTACGAAAT
ATATCTAGTACAAGTATTGAATGCTACCTGGGTTTTTTTTTTCGGTTATA
CCTAATCTAAAATAATCTAAAAAATCTAAAAGCAAAAATGCGAACAAGCC
CAACAAATTCTCACCAAAACACCAAAATCATCATCCCCACCCTCCACACC
CCATCAGCCAAACACGTCGTGTTTTAGCTCTTTGGAGTGTGCTGAACAGC
ACAGCTGTTTCTAAAATAACGATCACAATCTTGTATTTTTACTCGCGAGA
TTTTTCGGTATGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig17328:1070..2884-

>mRNA_H-paniculata_contig17328.4075.1 ID=mRNA_H-paniculata_contig17328.4075.1|Name=mRNA_H-paniculata_contig17328.4075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig17328:1070..2884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTTGGTAAAAATATTGGGCGGGTGGTGGAGCTGTCTGACCCGGA
GTGGTCACCATTTTGGATCAACTACAAGTTCCTCAAGAAGAAGGTTAAGA
TGAAGTTTGGTAAAAATATTGGGCGGGTGGTGGAGCTGTCTGACCCGGAG
TGGTCACCATTTTGGATCAACTACAAGTTCCTCAAGAAGAAGGTTAAGGC
GCTTGAGCTGTCCGTGGACAAGCTCGGCACTGCTCCGAAGTTGCGTAGCG
ATCCTCAAGCTATCGCCAGGTCGGCGGGTGAGGTTGACTTTTACAAAAGT
GAGTGCTCGTTTTGAGCGCTTGAGCTGTCCGTGGACAAGCTCGGCACTGC
TCCGAAGTTGCGTAGCGATCCTCAAGCTATCGCCAGGTCGGCGGGTGAGG
TTGACTTTTACAAAAGTGAGTGCTCGTTTTGA
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