mRNA_H-paniculata_contig17309.4069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17309.4069.1
Unique NamemRNA_H-paniculata_contig17309.4069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17309.4069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17309contigH-paniculata_contig17309:4473..5099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929364.5604773-CDS-H-paniculata_contig17309:4474..45591622929364.5604773-CDS-H-paniculata_contig17309:4474..4559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17309 4475..4559 -
1691480831.5768926-CDS-H-paniculata_contig17309:4474..45591691480831.5768926-CDS-H-paniculata_contig17309:4474..4559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17309 4475..4559 -
1622929364.5767853-CDS-H-paniculata_contig17309:4851..50991622929364.5767853-CDS-H-paniculata_contig17309:4851..5099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17309 4852..5099 -
1691480831.5902817-CDS-H-paniculata_contig17309:4851..50991691480831.5902817-CDS-H-paniculata_contig17309:4851..5099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17309 4852..5099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17309.4069.1prot_H-paniculata_contig17309.4069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17309 4475..5099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17309.4069.1

>prot_H-paniculata_contig17309.4069.1 ID=prot_H-paniculata_contig17309.4069.1|Name=mRNA_H-paniculata_contig17309.4069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
KQGFPKDVLQAVTKAYDQLDGDVLFSRVEWTVWVIMKIPSASSPSSSIDG
TPYFDSSSAMDDIPFSSSSFTMNVTSWDSPALCESTPTPRFREEVPLHEP
SGARWVSVSIP
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mRNA from alignment at H-paniculata_contig17309:4473..5099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17309.4069.1 ID=mRNA_H-paniculata_contig17309.4069.1|Name=mRNA_H-paniculata_contig17309.4069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at H-paniculata_contig17309:4473..5099- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAGGGTTCCCGAAGGATGTTCTGCAAGCTGTGACGAAGGCTTACGA
TCAGCTGGACGGGGATGTTCTCTTCTCCAGGGTGGAATGGACGGTTTGGG
TTATCATGAAGATACCAAGTGCATCATCACCATCGTCGTCAATCGACGGA
ACACCTTATTTCGACTCTTCTTCCGCGATGGACGATATTCCTTTTTCCAG
CTCTTCTTTCACGATGAACGTAACGTCTTGGGATTCTCCGGCCCTATGGT
GAGTGCTGCTGTACTGTTCCTCCGATGCTGTTCTCGCGCGACCTCTATGT
AGCATCGATTTTCTCTCTATTGTACTTGTGTTGCTCTTTCTACTGGAAGT
TATTATTTTTTTTTTCTGGCTAGGGAAGGGGTAGAAAAGAACACGAGCCC
CATGTTATTCAGTTCTTCTCTATCATAAATTATTTCTTGTCTTTCATCGA
GGAGGTCCATGTGTCGTGTTACCACAAAACACCCTGCTTACACACGATAT
CATATCCTGCCTGCTGTCCGGGACTTGGATATGTCGGCAGTGAATCGACG
CCAACCCCACGATTCCGAGAAGAGGTGCCGCTCCACGAACCGAGTGGTGC
ACGCTGGGTCAGCGTGTCGATACCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig17309:4473..5099-

>mRNA_H-paniculata_contig17309.4069.1 ID=mRNA_H-paniculata_contig17309.4069.1|Name=mRNA_H-paniculata_contig17309.4069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig17309:4473..5099- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAGGGTTCCCGAAGGATGTTCTGCAAGCTGTGACGAAGGCTTACGA
TCAGCTGGACGGGGATGTTCTCTTCTCCAGGGTGGAATGGACGGTTTGGG
TTATCATGAAGATACCAAGTGCATCATCACCATCGTCGTCAATCGACGGA
ACACCTTATTTCGACTCTTCTTCCGCGATGGACGATATTCCTTTTTCCAG
CTCTTCTTTCACGATGAACGTAACGTCTTGGGATTCTCCGGCCCTATGAA
ACAAGGGTTCCCGAAGGATGTTCTGCAAGCTGTGACGAAGGCTTACGATC
AGCTGGACGGGGATGTTCTCTTCTCCAGGGTGGAATGGACGGTTTGGGTT
ATCATGAAGATACCAAGTGCATCATCACCATCGTCGTCAATCGACGGAAC
ACCTTATTTCGACTCTTCTTCCGCGATGGACGATATTCCTTTTTCCAGCT
CTTCTTTCACGATGAACGTAACGTCTTGGGATTCTCCGGCCCTATGTGAA
TCGACGCCAACCCCACGATTCCGAGAAGAGGTGCCGCTCCACGAACCGAG
TGGTGCACGCTGGGTCAGCGTGTCGATACCATGAATCGACGCCAACCCCA
CGATTCCGAGAAGAGGTGCCGCTCCACGAACCGAGTGGTGCACGCTGGGT
CAGCGTGTCGATACCA
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