mRNA_H-paniculata_contig17275.4050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17275.4050.1
Unique NamemRNA_H-paniculata_contig17275.4050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: D8LFR8_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFR8_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.400e-34
Identity = 59/89 (66.29%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAVFPAKTKVMALYPGTTTFYPATISAPFIEGRNGETDMCVMQFQDDDLTPDGKIPDLTLPARFVRQRA 267
            RQFK++R++ILT PR  E SGA+FP  ++VM LYP TTTFYPATIS PF+EGR+G  D CVMQFQDDD TP+G +P   LPARFVR R+
Sbjct:  229 RQFKLRRSNILTLPRPEEASGAIFPVGSRVMTLYPQTTTFYPATISGPFVEGRDGRIDYCVMQFQDDDPTPEGVLPHWRLPARFVRYRS 317
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A835YH95_9STRA (SGF29 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH95_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.180e-9
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:    7 FKVKRNDILTFPREGEVSGAVFPAKTKVMALYPGTTTFYPATISAP-----------FIEGRNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            + V R++++   REGE SG  FP  ++V+A+YP TT+FY A I+ P                 G  D+C++QF+DD+    G      +PAR+V
Sbjct:  252 YTVTRDNVMALAREGEASGDQFPLHSRVLAMYPNTTSFYKAQIAGPPQRRSAAXXXXXXXXXVGGGDLCLVQFEDDEDEVTGLARRHLVPARYV 345
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: UPI000A2B5326 (SAGA-associated factor 29-like n=2 Tax=Arachis TaxID=3817 RepID=UPI000A2B5326)

HSP 1 Score: 60.8 bits (146), Expect = 2.610e-9
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+   +I+ FP+  + SGA  FP  + V+A+YPGTT  Y AT+    + G R  +TD  V++F DD+   DG +P+ T+P   V
Sbjct:  106 RQYKLPMGNIIPFPKSNDPSGASDFPPGSHVLAVYPGTTALYKATV----VHGHRKRKTDDYVLEFDDDE--EDGSLPERTVPFHKV 186
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A445CUJ5_ARAHY (SGF29 C-terminal domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445CUJ5_ARAHY)

HSP 1 Score: 60.1 bits (144), Expect = 5.610e-9
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+   +I+ FP+  + SGA  FP  + V+A+YPGTT  Y AT+    + G R  +TD  V++F DD+   DG +P  T+P   V
Sbjct:  113 RQYKLPMGNIIPFPKSNDPSGAPDFPPGSHVLAVYPGTTALYKATV----VHGHRKRKTDDYVLEFDDDE--EDGSLPQRTVPFHKV 193
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A445CUJ1_ARAHY (SGF29 C-terminal domain-containing protein n=6 Tax=Arachis TaxID=3817 RepID=A0A445CUJ1_ARAHY)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-8
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+   +I+ FP+  + SGA  FP  + V+A+YPGTT  Y AT+    + G R  +TD  V++F DD+   DG +P  T+P   V
Sbjct:  173 RQYKLPMGNIIPFPKSNDPSGAPDFPPGSHVLAVYPGTTALYKATV----VHGHRKRKTDDYVLEFDDDE--EDGSLPQRTVPFHKV 253
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A834TCC6_9FABA (SAGA-associated factor 29-like protein A-like isoform X1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TCC6_9FABA)

HSP 1 Score: 58.9 bits (141), Expect = 2.690e-8
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+  ++I+ FP+  + S A  FP  T+V+A+YPGTT  Y AT+    + G R  +TD  +++F DD+   DG +P  T+P   V
Sbjct:  173 RQYKLPMSNIIPFPKRNDPSNAPDFPHGTEVLAVYPGTTALYKATV----VNGHRKRKTDDYLLEFDDDE--EDGSLPQRTVPFHKV 253
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A396GVS2_MEDTR (Putative SGF29 tudor-like domain-containing protein n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GVS2_MEDTR)

HSP 1 Score: 58.2 bits (139), Expect = 2.950e-8
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+   +I+ FP+  + S A  FP    V+A+YPGTT  Y AT+    ++G R  +TD  V++F DD+   DG +P  T+P   V
Sbjct:  112 RQYKLPMGNIIPFPKSNDPSSAQDFPPGKHVLAVYPGTTALYKATV----VQGHRRRKTDDYVLEFDDDE--EDGSLPQRTVPFHTV 192
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BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A445GFF2_GLYSO (SAGA-associated factor 29-like A isoform A n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445GFF2_GLYSO)

HSP 1 Score: 58.5 bits (140), Expect = 3.750e-8
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+   +I+ FP+  + S A+ FP    V+A+YPGTT  Y AT+    ++G R  +T+  V++F DD+   DG +P  T+P R V
Sbjct:  174 RQYKLPMANIIPFPKSNDPSSALDFPPGKHVLAVYPGTTALYKATV----VQGPRRRKTEDYVLEFDDDE--EDGSLPQRTVPFRKV 254
[Close]
BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A1J7HNP6_LUPAN (SGF29 C-terminal domain-containing protein n=6 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A1J7HNP6_LUPAN)

HSP 1 Score: 58.2 bits (139), Expect = 5.370e-8
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+   +I+ FP+  ++S A  FP    V+A+YPGTT  Y AT+    + G R  +TD  V++F DD+   DG +P  T+P   V
Sbjct:  180 RQYKLPMGNIIPFPKSNDLSSAPDFPPGKHVLAVYPGTTALYKATV----VHGHRKRKTDDYVLEFDDDE--EDGSLPQRTVPFHKV 260
[Close]
BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Match: A0A072TXE2_MEDTR (SGF29 tudor-like domain protein n=17 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A072TXE2_MEDTR)

HSP 1 Score: 58.2 bits (139), Expect = 5.490e-8
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 RQFKVKRNDILTFPREGEVSGAV-FPAKTKVMALYPGTTTFYPATISAPFIEG-RNGETDMCVMQFQDDDLTPDGKIPDLTLPARFV 255
            RQ+K+   +I+ FP+  + S A  FP    V+A+YPGTT  Y AT+    ++G R  +TD  V++F DD+   DG +P  T+P   V
Sbjct:  184 RQYKLPMGNIIPFPKSNDPSSAQDFPPGKHVLAVYPGTTALYKATV----VQGHRRRKTDDYVLEFDDDE--EDGSLPQRTVPFHTV 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17275.4050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFR8_ECTSI3.400e-3466.29SGF29 C-terminal domain-containing protein n=2 Tax... [more]
A0A835YH95_9STRA2.180e-935.11SGF29 C-terminal domain-containing protein n=1 Tax... [more]
UPI000A2B53262.610e-940.23SAGA-associated factor 29-like n=2 Tax=Arachis Tax... [more]
A0A445CUJ5_ARAHY5.610e-940.23SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A445CUJ1_ARAHY1.020e-840.23SGF29 C-terminal domain-containing protein n=6 Tax... [more]
A0A834TCC6_9FABA2.690e-839.08SAGA-associated factor 29-like protein A-like isof... [more]
A0A396GVS2_MEDTR2.950e-839.08Putative SGF29 tudor-like domain-containing protei... [more]
A0A445GFF2_GLYSO3.750e-839.08SAGA-associated factor 29-like A isoform A n=1 Tax... [more]
A0A1J7HNP6_LUPAN5.370e-839.08SGF29 C-terminal domain-containing protein n=6 Tax... [more]
A0A072TXE2_MEDTR5.490e-839.08SGF29 tudor-like domain protein n=17 Tax=50 kb inv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17275contigH-paniculata_contig17275:3051..5246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue8.4e-28
Seed eggNOG ortholog2880.D8LFR8
KEGG koko:K03246,ko:K11364
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.methylated histone binding
EggNOG OGsKOG3038@1,KOG3038@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03021,ko03036
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.0730102-CDS-H-paniculata_contig17275:3050..31641622929362.0730102-CDS-H-paniculata_contig17275:3050..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17275 3051..3164 -
1691480830.6796412-CDS-H-paniculata_contig17275:3050..31641691480830.6796412-CDS-H-paniculata_contig17275:3050..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17275 3051..3164 -
1622929362.090156-CDS-H-paniculata_contig17275:5087..52461622929362.090156-CDS-H-paniculata_contig17275:5087..5246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17275 5088..5246 -
1691480830.6916907-CDS-H-paniculata_contig17275:5087..52461691480830.6916907-CDS-H-paniculata_contig17275:5087..5246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17275 5088..5246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17275.4050.1prot_H-paniculata_contig17275.4050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17275 3051..5246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17275.4050.1

>prot_H-paniculata_contig17275.4050.1 ID=prot_H-paniculata_contig17275.4050.1|Name=mRNA_H-paniculata_contig17275.4050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
RQFKVKRNDILTFPREGEVSGAVFPAKTKVMALYPGTTTFYPATISAPFI
EGRNGETDMCVMQFQDDDLTPDGKIPDLTLPARFVRQRAT*
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mRNA from alignment at H-paniculata_contig17275:3051..5246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17275.4050.1 ID=mRNA_H-paniculata_contig17275.4050.1|Name=mRNA_H-paniculata_contig17275.4050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2196bp|location=Sequence derived from alignment at H-paniculata_contig17275:3051..5246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAGTTCAAGGTAAAAAGGAATGATATATTGACGTTTCCAAGAGAAGG
AGAGGTGTCGGGGGCTGTGTTCCCCGCCAAGACGAAGGTCATGGCGCTCT
ACCCTGGCACCACCACTTTCTACCCGGCGACGATTAGCGCCCCATTCATC
GAGGGAAGGGTGAGGAGTTAGCTATATCTATATAATCCGAGTGTACTTCA
AAAATAATTTACTATTTTGTTGTTTGTTTTCTGTGATGTTAGCACCCCTT
GGATGGAAAGCAGGATACTATAATAATAATGTTTCTTGTTGTGTTTTTGG
TAGGAATGATGGGGTGATGACCGGGTGAAATGTTTAAGGGAGCGAGGGAG
ATTACTGGAAGATGGTCTCAGTAATACCTGTCAGATTTTATTTTACAATG
AGAGAATTATATATATATATCGTCTCAATTCCTCGACAACTAAGATCGAT
ATCAAAAAGAGGAAAGGATGCATGTTTTCGGTTTTCTATTTGCGACATTT
TTGAAAAAGAATCTCACCTTTCAATTCGTAAAATTCAGCAGAACAAATAT
AGGAAACCGCACCCCCGTCCGGATGAAATGGCATGTATATGGCATAATAG
TACTTGTATAAACATGCGATTAATTTCGGTTTTCTGGGGAATTACGACAA
CATGAAACGCGCCATGTGGCTGTCTTTGTTTTGGCTTCAACCCTTAGAGA
GCTCACACTTGCAAAAATATATATATATATTTTCTAGGATGTTTCTCTAC
AAAAAATGTTTTCTAGGACATCCTTTTTGGCTTCTTTTTTTTTCATGCAA
AAATACGTTATATACTGGAAAATAGCAAATAAAAGCATCAGTACTGGGAA
GGAAGCGATCTCTTGTTCTGTCCGAGAAGAGCATTATTGGTTAATTTCTC
GGCATTTTACCTCCCCCCCAAAGAGAAGCAATGGTTGATTCGCGCTTATC
TTGGGCCCCCAAGGGGTTAAGTTGATACATGGATTGTGATATTTTATTTG
GTTCATCGGCAGAAAACGTTGAGAAACGATATCTAGGATTCTTGTTGAGG
CCATCTCATAATGTACTTTGTTTTGACTGCATAGTAAAATGCAGTTAGTT
GCATATCTAGTATACTGCTCGAGCATGGTGACCGTGTTAATATGCCCTGT
TCTTAACACTTCTACCTGCGGACGGCGAGCGTGTAACCTCCTATTCGCCT
GAGGACGGCGACTTTGTCTACTTGGGTCCTCGTTCCGTGTCGCCGGGGCT
GTGACTTGTTAGACTTGGGTCAAACGATCACTGAGCTGAGTGGGAGTGGC
CCGCTCACCTCTGGAGCATGGCAGTAGCCCGGACGGGGTTGTACGATGGC
CGAAGAAATAAATATGATTCTCGTACGGATAAGGAGGCGTGGCGGATTAT
CATGTTGTGTTGGGTCTTGTTCCCATCGCTTTCGTGACGTATCGCCCACA
ACCCAAGCAGGGGGCACCTTTGTGGACAACCAGGGGGGTACCTACAACTC
CATTTTGTTTTGTACATTTCGAGGGCATGTTCCTGACGTTCGTGGCGTTC
CTGAACCGGGGTACTCTGTAAAACACCTAGTGGTGTTTCTGTTCCATAAT
TGAAACAGTTTTTCTGGCTGATTCCGAACCCAGATGGCCAGTTTCATCTA
CAGTACTGGTACATGGGTGAACCGAGTGCATGCTTCGCACTGCTGTACGC
CCCAAAAGGTAGATCTAATCACTTGAACAGGCGTTGTTTTCTCTTGAGAG
GCAATATTTCGTGAGGGCATCGTGTCCTTATCTTTTCAACGATGGGATAT
ATATATATATATATATATATATATATATATATATATATATATATATTATG
TATCGGGAATATATCCGTCAGGCCCCCGCAGGGACTGGTGAAATATCGTA
CGATGTATCTGGTAACGGTGGTGATGATAGTAACGTCTATTGCCGATATA
TCGGTGCCCTTACTACGATACGATGTATCCGATTCAATCGGTGCTGATGT
ATAACCCTTGATGTGCTCCATTTGACGCTAATCCACCCCCTCTTCTTTCT
CCTCCATCCTTCGATGATGTTGTCGTTGATAGAACGGCGAAACGGACATG
TGCGTGATGCAGTTTCAAGACGACGACCTAACCCCGGACGGCAAAATCCC
AGACCTGACGCTTCCCGCACGCTTCGTTCGCCAGCGTGCGACCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17275:3051..5246-

>mRNA_H-paniculata_contig17275.4050.1 ID=mRNA_H-paniculata_contig17275.4050.1|Name=mRNA_H-paniculata_contig17275.4050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig17275:3051..5246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAGTTCAAGGTAAAAAGGAATGATATATTGACGTTTCCAAGAGAAGG
AGAGGTGTCGGGGGCTGTGTTCCCCGCCAAGACGAAGGTCATGGCGCTCT
ACCCTGGCACCACCACTTTCTACCCGGCGACGATTAGCGCCCCATTCATC
GAGGGAAGGAGGCAGTTCAAGGTAAAAAGGAATGATATATTGACGTTTCC
AAGAGAAGGAGAGGTGTCGGGGGCTGTGTTCCCCGCCAAGACGAAGGTCA
TGGCGCTCTACCCTGGCACCACCACTTTCTACCCGGCGACGATTAGCGCC
CCATTCATCGAGGGAAGGAACGGCGAAACGGACATGTGCGTGATGCAGTT
TCAAGACGACGACCTAACCCCGGACGGCAAAATCCCAGACCTGACGCTTC
CCGCACGCTTCGTTCGCCAGCGTGCGACCTGAAACGGCGAAACGGACATG
TGCGTGATGCAGTTTCAAGACGACGACCTAACCCCGGACGGCAAAATCCC
AGACCTGACGCTTCCCGCACGCTTCGTTCGCCAGCGTGCGACCTGA
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