mRNA_H-paniculata_contig17248.4037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17248.4037.1
Unique NamemRNA_H-paniculata_contig17248.4037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17248.4037.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.490e-11
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  343 PEDTTN-APVCIARKDTLEFHLRPYRVPMDTLWVKHSAVVGMVTRLLG 483
            PE+T +   VC  RKDTLEFHLRPYR+PMDTL VKHSAV+ +VT LLG
Sbjct:   19 PEETCSIGGVCPPRKDTLEFHLRPYRIPMDTLRVKHSAVLDLVTTLLG 66
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BLAST of mRNA_H-paniculata_contig17248.4037.1 vs. uniprot
Match: D7FMN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:  364 PVCIARKDTLEFHLRPYRVPMDTLWVKHSAVVGMVTRLLG 483
            P  I  K TLEF LRPYR+P + L  KH AV+GM+T  LG
Sbjct:   19 PRAIKNKGTLEFALRPYRIPAEVLREKHEAVLGMITIFLG 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17248.4037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWC3_9PHAE4.490e-1170.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMN6_ECTSI1.420e-557.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17248contigH-paniculata_contig17248:1660..3266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17248.4037.1prot_H-paniculata_contig17248.4037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17248 2276..3266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929360.606339-UTR-H-paniculata_contig17248:1659..18481622929360.606339-UTR-H-paniculata_contig17248:1659..1848Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17248 1660..1848 +
1691480830.0535347-UTR-H-paniculata_contig17248:1659..18481691480830.0535347-UTR-H-paniculata_contig17248:1659..1848Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17248 1660..1848 +
1622929360.6588702-UTR-H-paniculata_contig17248:2191..22751622929360.6588702-UTR-H-paniculata_contig17248:2191..2275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17248 2192..2275 +
1691480830.0623057-UTR-H-paniculata_contig17248:2191..22751691480830.0623057-UTR-H-paniculata_contig17248:2191..2275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17248 2192..2275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929360.6727953-CDS-H-paniculata_contig17248:2275..23971622929360.6727953-CDS-H-paniculata_contig17248:2275..2397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17248 2276..2397 +
1691480830.0705566-CDS-H-paniculata_contig17248:2275..23971691480830.0705566-CDS-H-paniculata_contig17248:2275..2397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17248 2276..2397 +
1622929360.6906269-CDS-H-paniculata_contig17248:3151..32661622929360.6906269-CDS-H-paniculata_contig17248:3151..3266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17248 3152..3266 +
1691480830.0787778-CDS-H-paniculata_contig17248:3151..32661691480830.0787778-CDS-H-paniculata_contig17248:3151..3266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17248 3152..3266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17248.4037.1

>prot_H-paniculata_contig17248.4037.1 ID=prot_H-paniculata_contig17248.4037.1|Name=mRNA_H-paniculata_contig17248.4037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MTSTGTTCVREERSTRRTTGPCNPEDTTNAPVCIARKDTLEFHLRPYRVP
MDTLWVKHSAVVGMVTRLLGEPVVDLDV*
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mRNA from alignment at H-paniculata_contig17248:1660..3266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17248.4037.1 ID=mRNA_H-paniculata_contig17248.4037.1|Name=mRNA_H-paniculata_contig17248.4037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1607bp|location=Sequence derived from alignment at H-paniculata_contig17248:1660..3266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGATATGGTGAGAGCGACCGACCCGCTGTTGAAAATGTATTTCTTATT
TTTTAGGACCTATACCTTTCTCCATTACTTGAAAGATGCCACTGGCCACC
ACATGCACGGACAGAAGGGTCAGGTTTGGGTTCTGTCAACGCAGATCGAT
GGTTAGAGGTACACCCTGCCAACACCCAAGCGTTCACCGGTAAGTAAGTG
AGAGTTTGATGTTGGGGTTTAGATCACTCGAACCTTTGTAATCCGCATAA
GTTGTTTGATATCATGATATTCAAGTCACCCGATATCTATCTCAGCCGAG
ATCATAATCGAACAGGCCTGCGTCGGTCCAACATCCAAGAAAACGGTAAA
ATGTCGTGTTTTGGTTTTTTTGCGTCATGCGGTCAAAACCAACTGGCCGT
CGGTTAGCCGCGCCGCTTGTCAGTAGTTCAAATAGTAAGCACAGACCTAA
ATCACACCTCACCATTATTCCAGAAGGCCACGACAAACGATACTGGCTGT
GTCACGTTTTAATATACACCTCCCCGGCACAGAGTTGTGGAGCTGGTACA
GAAGAAAAGGGCGAAATAGACAGCGGATTTTTAGCTGGGTGGATCCATCG
TATCTACTTGGGGACGATGACGAGCACCGGGACAACATGCGTGCGGGAGG
AGAGATCAACGAGAAGGACAACAGGACCCTGTAATCCTGAGGACACAACG
AATGCCCCAGTCTGCATTGCGCGCAAGGACACCCTTGAGTGAGCAGGGTT
ATACCGTATCGTGTTCTGTTATAAAACTGTGGTTTTTTATGGTAAGGAGT
ATATTTTGAGAAACCCAGAGACAACGCATATTACCAGCTGCATTTCCCGC
CCCCTAAAAGTGACTCAACTGATTGATAATGACCTAGCAAAGCCGCTCGC
GGCGGCTAGCCCAGGAGATCTCTTACTTGCAAGTATAGCCTCGACACGTA
GCATTGTTGCCCCTGTCTAGCTGTTTGTCCTAAACATGCATACACGTACT
CAGAAGGCATCTCAAATTTTTGCTGTACGATGTCAACCATGCCGCTTCGT
GTTGTTTGGAAGTCGGAATTCTACTTCAGCGTATGTTAATTTCACATGAA
GTACGTACACTCACAGCACTCAGACTATACCGAGTACACTTCCAAATCTT
GGAAGATGGGAAGATTTCTAGACAACGAAGAGTAAATATCAAGAATTTTT
GTCTTCGTTTGGAACCTTTCTATCTCCTCTATCTGAAAGTGTCTAGTGCA
GGACAATACCGTAAGTCTCGAACAGTGAAACAACAATCAGAAAAGTGCTC
TCGCACGTTGAACCCCCGGCGCTTACCTAATTACAGTATGCAGAACTATA
TTTACCGACTGCACTGACTGTCGTCATATAGTGGTCACCGTCATGATCAC
CTCCAAAATATATAGATCGAAAAGGTTCGGGACATACTGCTTCAAGTTTG
TCTACCCCCCTAATGGAATCCCGTACAATATATTAAATGCAGATTCCACC
TTCGACCGTACCGCGTCCCCATGGACACGTTGTGGGTGAAGCATTCTGCG
GTGGTGGGCATGGTGACTAGGCTGTTAGGTGAGCCCGTCGTCGATTTAGA
CGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17248:1660..3266+

>mRNA_H-paniculata_contig17248.4037.1 ID=mRNA_H-paniculata_contig17248.4037.1|Name=mRNA_H-paniculata_contig17248.4037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig17248:1660..3266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAGCACCGGGACAACATGCGTGCGGGAGGAGAGATCAACGAGAAG
GACAACAGGACCCTGTAATCCTGAGGACACAACGAATGCCCCAGTCTGCA
TTGCGCGCAAGGACACCCTTGAATGACGAGCACCGGGACAACATGCGTGC
GGGAGGAGAGATCAACGAGAAGGACAACAGGACCCTGTAATCCTGAGGAC
ACAACGAATGCCCCAGTCTGCATTGCGCGCAAGGACACCCTTGAATTCCA
CCTTCGACCGTACCGCGTCCCCATGGACACGTTGTGGGTGAAGCATTCTG
CGGTGGTGGGCATGGTGACTAGGCTGTTAGGTGAGCCCGTCGTCGATTTA
GACGTTTGAATTCCACCTTCGACCGTACCGCGTCCCCATGGACACGTTGT
GGGTGAAGCATTCTGCGGTGGTGGGCATGGTGACTAGGCTGTTAGGTGAG
CCCGTCGTCGATTTAGACGTTTGA
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