mRNA_H-paniculata_contig1724.4034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1724.4034.1
Unique NamemRNA_H-paniculata_contig1724.4034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.040e-16
Identity = 51/144 (35.42%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:    1 IEKKSDSTAALLSYSAEYITPK-KQKIGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHGTTPALDHLQPF 405
            ++ KSD+ +A  S+ A          +  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+   A+A       +   ++    DRLW EAM +AC+  N +  S+N  +  PYE WHG      H +P+
Sbjct:  668 LKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA---SHARPY 808
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.140e-16
Identity = 50/144 (34.72%), Postives = 71/144 (49.31%), Query Frame = 1 
Query:    1 IEKKSDSTAALLSYSAEYITPK-KQKIGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHGTTPALDHLQPF 405
            ++ K D+ +A  S+ A          +  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+   A+A       +   ++    DRLW EAM +AC+  N +  S+N  +  PYE WHG      H +P+
Sbjct:   16 LKSKPDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA---SHARPY 156
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.510e-16
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:   76 IGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            +  +  DNGG+F  GDF    NE  I  E TP Y+PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +M PYE W+G
Sbjct:  156 VEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 262
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.270e-16
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:    1 IEKKSDSTAALLSYSAEY---ITPKKQKIGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            ++ +SD+  A  ++ A     I P   +I  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +M PYE W+G
Sbjct:  350 LKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 482
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 9.150e-16
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:   76 IGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            +  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +M PYE W+G
Sbjct:   42 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 148
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 9.350e-16
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:   76 IGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            +  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +M PYE W+G
Sbjct:  309 VEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 415
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.240e-15
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:   76 IGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            +  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +M PYE W+G
Sbjct:  254 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYG 360
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.410e-15
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:    1 IEKKSDSTAALLSYSAEYITPKKQK-IGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            ++ KSD+  A  S+ A          +  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +  PYE W+G
Sbjct:  762 LKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG 894
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.430e-15
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:    1 IEKKSDSTAALLSYSAEYITPKKQK-IGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            ++ KSD+  A  S+ A          +  +  DNGGEF  G+F    NE  I  E TP Y+PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +  PYE W+G
Sbjct:  469 LKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG 601
[Close]
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.460e-15
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:    1 IEKKSDSTAALLSYSAEYITPK-KQKIGAIHVDNGGEF-KGDFHWKLNEFGITHEHTPPYTPQYNDCAGWRLGLLREKAVA-------MMQGLEQEGNDRLWGEAMRYACDLTNMSIASSNTGNMMPYEKWHG 372
            +  KSD+ +A  S+ A          +  +  DNGGEF  G+F    NE  I  E TP ++PQYN  A   LGL+ E A+A       +   ++    D+LW EAM +AC+  N +  S+N  +  PYE W+G
Sbjct:  366 LRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYG 498
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1724.4034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2M6_9PHAE1.040e-1635.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWE4_9PHAE1.140e-1634.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE4.510e-1640.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE6.270e-1637.04Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE9.150e-1640.19Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE9.350e-1640.19Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE1.240e-1540.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE4.410e-1536.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE4.430e-1536.09Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE4.460e-1535.34Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1724contigH-paniculata_contig1724:21243..21653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.8
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog15368.BRADI2G01640.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929360.260522-CDS-H-paniculata_contig1724:21242..216531622929360.260522-CDS-H-paniculata_contig1724:21242..21653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1724 21243..21653 -
1691480829.961568-CDS-H-paniculata_contig1724:21242..216531691480829.961568-CDS-H-paniculata_contig1724:21242..21653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1724 21243..21653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1724.4034.1prot_H-paniculata_contig1724.4034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1724 21243..21653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1724.4034.1

>prot_H-paniculata_contig1724.4034.1 ID=prot_H-paniculata_contig1724.4034.1|Name=mRNA_H-paniculata_contig1724.4034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
IEKKSDSTAALLSYSAEYITPKKQKIGAIHVDNGGEFKGDFHWKLNEFGI
THEHTPPYTPQYNDCAGWRLGLLREKAVAMMQGLEQEGNDRLWGEAMRYA
CDLTNMSIASSNTGNMMPYEKWHGTTPALDHLQPFGT
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mRNA from alignment at H-paniculata_contig1724:21243..21653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1724.4034.1 ID=mRNA_H-paniculata_contig1724.4034.1|Name=mRNA_H-paniculata_contig1724.4034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig1724:21243..21653- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAAAAGAAGAGCGATTCCACCGCAGCACTCCTGAGCTACAGTGCCGA
ATACATCACTCCCAAAAAACAGAAGATCGGCGCCATCCACGTGGACAACG
GTGGAGAGTTCAAGGGGGACTTCCACTGGAAGCTGAACGAGTTCGGCATC
ACACACGAGCACACCCCGCCGTATACGCCACAGTACAACGACTGCGCAGG
ATGGAGGTTGGGACTGCTGCGCGAGAAGGCGGTCGCGATGATGCAAGGCC
TAGAGCAAGAAGGAAACGACAGGCTGTGGGGGGAGGCGATGCGATACGCT
TGCGACTTGACCAACATGAGCATTGCATCGTCTAACACAGGGAACATGAT
GCCATACGAGAAGTGGCACGGAACCACGCCGGCGCTGGATCACTTACAGC
CTTTCGGGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1724:21243..21653-

>mRNA_H-paniculata_contig1724.4034.1 ID=mRNA_H-paniculata_contig1724.4034.1|Name=mRNA_H-paniculata_contig1724.4034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig1724:21243..21653- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAAAAGAAGAGCGATTCCACCGCAGCACTCCTGAGCTACAGTGCCGA
ATACATCACTCCCAAAAAACAGAAGATCGGCGCCATCCACGTGGACAACG
GTGGAGAGTTCAAGGGGGACTTCCACTGGAAGCTGAACGAGTTCGGCATC
ACACACGAGCACACCCCGCCGTATACGCCACAGTACAACGACTGCGCAGG
ATGGAGGTTGGGACTGCTGCGCGAGAAGGCGGTCGCGATGATGCAAGGCC
TAGAGCAAGAAGGAAACGACAGGCTGTGGGGGGAGGCGATGCGATACGCT
TGCGACTTGACCAACATGAGCATTGCATCGTCTAACACAGGGAACATGAT
GCCATACGAGAAGTGGCACGGAACCACGCCGGCGCTGGATCACTTACAGC
CTTTCGGGACGATCGAAAAGAAGAGCGATTCCACCGCAGCACTCCTGAGC
TACAGTGCCGAATACATCACTCCCAAAAAACAGAAGATCGGCGCCATCCA
CGTGGACAACGGTGGAGAGTTCAAGGGGGACTTCCACTGGAAGCTGAACG
AGTTCGGCATCACACACGAGCACACCCCGCCGTATACGCCACAGTACAAC
GACTGCGCAGGATGGAGGTTGGGACTGCTGCGCGAGAAGGCGGTCGCGAT
GATGCAAGGCCTAGAGCAAGAAGGAAACGACAGGCTGTGGGGGGAGGCGA
TGCGATACGCTTGCGACTTGACCAACATGAGCATTGCATCGTCTAACACA
GGGAACATGATGCCATACGAGAAGTGGCACGGAACCACGCCGGCGCTGGA
TCACTTACAGCCTTTCGGGACG
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